Sync from SUSE:ALP:Source:Standard:1.0 python-h5py revision 292d969259e119bf5dca18217924354f
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.jar filter=lfs diff=lfs merge=lfs -text
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*.lz filter=lfs diff=lfs merge=lfs -text
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*.lzma filter=lfs diff=lfs merge=lfs -text
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*.obscpio filter=lfs diff=lfs merge=lfs -text
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*.oxt filter=lfs diff=lfs merge=lfs -text
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||||||
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*.pdf filter=lfs diff=lfs merge=lfs -text
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*.png filter=lfs diff=lfs merge=lfs -text
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*.rpm filter=lfs diff=lfs merge=lfs -text
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*.tbz filter=lfs diff=lfs merge=lfs -text
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||||||
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.ttf filter=lfs diff=lfs merge=lfs -text
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||||||
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*.txz filter=lfs diff=lfs merge=lfs -text
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||||||
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*.whl filter=lfs diff=lfs merge=lfs -text
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*.xz filter=lfs diff=lfs merge=lfs -text
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||||||
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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||||||
4
_multibuild
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_multibuild
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<multibuild>
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||||||
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<package>openmpi4</package>
|
||||||
|
</multibuild>
|
||||||
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|
||||||
BIN
h5py-3.10.0.tar.gz
(Stored with Git LFS)
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BIN
h5py-3.10.0.tar.gz
(Stored with Git LFS)
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Binary file not shown.
617
python-h5py.changes
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python-h5py.changes
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-------------------------------------------------------------------
|
||||||
|
Sat Dec 16 19:04:27 UTC 2023 - Dirk Müller <dmueller@suse.com>
|
||||||
|
|
||||||
|
- update to 3.10.0:
|
||||||
|
* The read-only S3 file driver ('ros3') now accepts an AWS session
|
||||||
|
token as part of the credentials (:pr:`2301`). Pass session_token
|
||||||
|
when opening a :class:`.File` (along with the other S3 parameters).
|
||||||
|
This requires HDF5 1.14.2 or later, with the ROS3 feature built.
|
||||||
|
* Support for the HDF5 1.8 series was dropped, along with early 1.10
|
||||||
|
releases. The minimum required HDF5 version is now 1.10.4.
|
||||||
|
* Exposing HDF5 functions
|
||||||
|
* H5Pget_fapl_ros3_token & H5Pset_fapl_ros3_token
|
||||||
|
* Various nasty bugs when using nested compound and vlen data types
|
||||||
|
have been fixed (:pr:`2134`).
|
||||||
|
* Fixed an OverflowError in some cases when registering a filter
|
||||||
|
with :func:`h5z.register_filter`, especially on 32-bit
|
||||||
|
architectures (:pr:`2318`).
|
||||||
|
* Sequential slicing/indexing operations on a :class:`.VirtualSource`
|
||||||
|
object (e.g. source[:10][::2]) now raise an error, rather than
|
||||||
|
giving incorrect results (:pr:`2280`).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Oct 23 12:04:17 UTC 2023 - Nicolas Morey <nicolas.morey@suse.com>
|
||||||
|
|
||||||
|
- Drop support for obsolete openmpi[123]
|
||||||
|
- Prepare support for openmpi5
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Aug 22 18:22:43 UTC 2023 - Ben Greiner <code@bnavigator.de>
|
||||||
|
|
||||||
|
- Update to 3.9.0
|
||||||
|
* This version of h5py requires Python 3.8 or above.
|
||||||
|
## New features
|
||||||
|
* New out argument to read_direct_chunk() to allow passing the
|
||||||
|
output buffer (PR 2232).
|
||||||
|
* The objects from Dataset.asstr() and Dataset.astype() now
|
||||||
|
implement the __array__() method (PR 2269). This speeds up
|
||||||
|
access for functions that support it, such as np.asarray().
|
||||||
|
* Validate key types when creating groups and attributes, giving
|
||||||
|
better error messages when invalid types are used (PR 2266).
|
||||||
|
## Deprecations & removals
|
||||||
|
* Using Dataset.astype() as a context manager has been removed,
|
||||||
|
after being deprecated in h5py 3.6. Read data by slicing the
|
||||||
|
returned object instead: dset.astype('f4')[:].
|
||||||
|
* Exposing HDF5 functions
|
||||||
|
* H5Pget_elink_acc_flags & H5Pset_elink_acc_flags as
|
||||||
|
h5py.h5p.PropLAID.get_elink_acc_flags() &
|
||||||
|
h5py.h5p.PropLAID.set_elink_acc_flags(): access the external
|
||||||
|
link file access traversal flags in a link access property list
|
||||||
|
(PR 2244).
|
||||||
|
* H5Zregister as h5py.h5z.register_filter(): register an HDF5
|
||||||
|
filter (PR 2229).
|
||||||
|
## Bug fixes
|
||||||
|
* Group.__contains__ and Group.get now use the default link
|
||||||
|
access property list systematically (PR 2244).
|
||||||
|
* Removed various calls to the deprecated numpy.product function
|
||||||
|
(PR 2242 & PR 2273).
|
||||||
|
* Fix the IPython tab-completion integration in IPython 8.12 (PR
|
||||||
|
2256).
|
||||||
|
* Replacing attributes with AttributeManager.create() now deletes
|
||||||
|
the old attributes before creating the new one, rather than
|
||||||
|
using a temporary name and renaming the new attribute (PR
|
||||||
|
2274). This should avoid some confusing bugs affecting
|
||||||
|
attributes. However, failures creating an attribute are less
|
||||||
|
likely to leave an existing attribute of the same name in
|
||||||
|
place. To change an attribute value without changing its shape
|
||||||
|
or dtype, use modify() instead.
|
||||||
|
## Building h5py
|
||||||
|
* When building with Parallel HDF5 support, the version of mpi4py
|
||||||
|
used on various Python versions is increased to 3.1.1, fixing
|
||||||
|
building with a newer setuptools (PR 2225).
|
||||||
|
* Some fixes towards compatibility with the upcoming Cython 3 (PR
|
||||||
|
2247).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Feb 16 10:05:30 UTC 2023 - Ben Greiner <code@bnavigator.de>
|
||||||
|
|
||||||
|
- Clean up build and runtime requirements
|
||||||
|
- Drop python-h5py-relax-dependency-versions.patch -- it has become
|
||||||
|
a noop at the last refresh.
|
||||||
|
- Only build for supported pythons (>= 3.7)
|
||||||
|
- PEP517 build
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Feb 8 18:59:18 UTC 2023 - Arun Persaud <arun@gmx.de>
|
||||||
|
|
||||||
|
- specfile:
|
||||||
|
* update copyright year
|
||||||
|
* update patch
|
||||||
|
|
||||||
|
- update to version 3.8.0:
|
||||||
|
* New features
|
||||||
|
+ h5py now has pre-built packages for Python 3.11.
|
||||||
|
+ h5py is compatible with HDF5 1.14 (:pr:`2187`). Pre-built
|
||||||
|
packages on PyPI still include HDF5 1.12 for now.
|
||||||
|
+ :ref:`dataset_fancy` now accepts tuples, or any other sequence
|
||||||
|
type, rather than only lists and NumPy arrays. This also
|
||||||
|
includes range objects, but this will normally be less efficient
|
||||||
|
than the equivalent slice.
|
||||||
|
+ New property :attr:`.Dataset.is_scale` for checking if the
|
||||||
|
dataset is a dimension scale (:pr:`2168`).
|
||||||
|
+ :meth:`.Group.require_dataset` now validates maxshape for
|
||||||
|
resizable datasets (:pr:`2116`).
|
||||||
|
+ :class:`.File` now has a meta_block_size argument and
|
||||||
|
property. This influences how the space for metadata, including
|
||||||
|
the initial header, is allocated.
|
||||||
|
+ Chunk cache can be configured per individual HDF5 dataset
|
||||||
|
(:pr:`2127`). Use :meth:`.Group.create_dataset` for new datasets
|
||||||
|
or :meth:`.Group.require_dataset` for already existing
|
||||||
|
datasets. Any combination of the rdcc_nbytes, rdcc_w0, and
|
||||||
|
rdcc_nslots arguments is allowed. The file defaults apply to
|
||||||
|
those omitted.
|
||||||
|
+ HDF5 file names for ros3 driver can now also be s3:// resource
|
||||||
|
locations (:pr:`2140`). h5py will translate them into AWS
|
||||||
|
path-style URLs for use by the driver.
|
||||||
|
+ When using the ros3 driver, AWS authentication will be activated
|
||||||
|
only if all three driver arguments are provided. Previously AWS
|
||||||
|
authentication was active if any one of the arguments was set
|
||||||
|
causing an error from the HDF5 library.
|
||||||
|
+ :meth:`.Dataset.fields` now implements the __array__() method
|
||||||
|
(:pr:`2151`). This speeds up accessing fields with functions
|
||||||
|
that expect this, like np.asarray().
|
||||||
|
+ Low-level :meth:`h5py.h5d.DatasetID.chunk_iter` method that
|
||||||
|
invokes a user-supplied callable object on every written chunk
|
||||||
|
of one dataset (:pr:`2202`). It provides much better performance
|
||||||
|
when iterating over a large number of chunks.
|
||||||
|
* Exposing HDF5 functions
|
||||||
|
+ H5Dchunk_iter as :meth:`h5py.h5d.DatasetID.chunk_iter`.
|
||||||
|
+ H5Pset_meta_block_size and H5Pget_meta_block_size (:pr:`2106`).
|
||||||
|
* Bug fixes
|
||||||
|
+ Fixed getting the default fill value (an empty string) for
|
||||||
|
variable-length string data (:pr:`2132`).
|
||||||
|
+ Complex float16 data could cause a TypeError when trying to
|
||||||
|
coerce to the currently unavailable numpy.dtype('c4'). Now a
|
||||||
|
compound type is used instead (:pr:`2157`).
|
||||||
|
+ h5py 3.7 contained a performance regression when using a boolean
|
||||||
|
mask array to index a 1D dataset, which is now fixed
|
||||||
|
(:pr:`2193`).
|
||||||
|
* Building h5py
|
||||||
|
+ Parallel HDF5 can be built with Microsoft MS-MPI
|
||||||
|
(:pr:`2147`). See :ref:`build_mpi` for details.
|
||||||
|
+ Some 'incompatible function pointer type' compile time warnings
|
||||||
|
were fixed (:pr:`2142`).
|
||||||
|
+ Fix for finding HDF5 DLL in mingw (:pr:`2105`).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun May 29 15:47:49 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
|
||||||
|
|
||||||
|
- Update to version 3.7.0:
|
||||||
|
* Provide the ability to use the Direct Virtual File Driver
|
||||||
|
(VFD) from HDF5 (Linux only).
|
||||||
|
* The :class:`.File` constructor contains two new parameters
|
||||||
|
alignment_threshold, and alignment_interval controling the
|
||||||
|
data alignment within the HDF5 file (gh#h5py/h5py#2040).
|
||||||
|
* :meth:`~.Group.create_dataset` and
|
||||||
|
:meth:`~.Group.require_dataset` now accept parameters
|
||||||
|
efile_prefix and virtual_prefix to set a filesystem path
|
||||||
|
prefix to use to find files for external datasets and for
|
||||||
|
virtual dataset sources (gh#h5py/h5py#2092). These only affect
|
||||||
|
the current access; the prefix is not stored in the file.
|
||||||
|
* Bugs fixed:
|
||||||
|
- Fix a deadlock which was possible when the same dataset was
|
||||||
|
accessed from multiple threads (gh#h5py/h5py#2064).
|
||||||
|
- New attributes are created directly, instead of via a
|
||||||
|
temporary attribute with subsequent renaming. This fixes
|
||||||
|
overwriting attributes with track_order=True.
|
||||||
|
- Fix for building with mpi4py on Python 3.10
|
||||||
|
(gh#h5py/h5py#2101).
|
||||||
|
- Fixed fancy indexing with a boolean array for a single
|
||||||
|
dimension (gh#h5py/h5py#2079).
|
||||||
|
- Avoid returning unitialised memory when reading from a
|
||||||
|
chunked dataset with missing chunks and no fill value
|
||||||
|
(gh#h5py/h5py#2076).
|
||||||
|
- Enable setting of fillvalue for datasets with variable
|
||||||
|
length string dtype (gh#h5py/h5py#2044).
|
||||||
|
- Closing a file or calling get_obj_ids() no longer re-enables
|
||||||
|
Python garbage collection if it was previously disabled
|
||||||
|
(gh#h5py/h5py#2020).
|
||||||
|
- Refresh python-h5py-relax-dependency-versions.patch for updated
|
||||||
|
version.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Fri Mar 4 11:43:46 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
|
||||||
|
|
||||||
|
- Update to version 3.6.0:
|
||||||
|
* Using :meth:`.Dataset.astype` as a context manager (with
|
||||||
|
dset.astype(t):) is deprecated. Slice the object returned by
|
||||||
|
astype instead (data = dset.astype(t)[:10]).
|
||||||
|
* Getting the value of h5py.get_config().default_file_mode now
|
||||||
|
issues a deprecation warning. This has been 'r' by default
|
||||||
|
from h5py 3.0, and cannot be changed since 3.3.
|
||||||
|
- Rebase python-h5py-relax-dependency-versions.patch to apply
|
||||||
|
against updated version.
|
||||||
|
- Also enforce %requires_eq on hdf5 to force rebuilds when hdf5
|
||||||
|
gets version updates in Factory (boo#1196682).
|
||||||
|
- Skip tests marked with 'mpi_skip' when building with openmpi
|
||||||
|
flavours (see e.g., https://github.com/h5py/h5py/issues/1997).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Sep 9 16:08:42 UTC 2021 - Matej Cepl <mcepl@suse.com>
|
||||||
|
|
||||||
|
- Correct order of definitions to generate multiple packages for
|
||||||
|
multiple builds.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Sep 5 16:38:52 UTC 2021 - Arun Persaud <arun@gmx.de>
|
||||||
|
|
||||||
|
- update to version 3.4.0:
|
||||||
|
* New features
|
||||||
|
+ The pre-built wheels now bundle HDF5 1.12.1 (:pr:`1945`).
|
||||||
|
+ len() now works on dset.astype(), .asstr() and .fields()
|
||||||
|
wrappers (:pr:`1913`).
|
||||||
|
* Bug fixes
|
||||||
|
+ Fix bug introduced in version 3.3 that did not allow the
|
||||||
|
creation of files using the flag "a" for certain drivers
|
||||||
|
(e.g. mpiio, core and stdio) (:pr:`1922`).
|
||||||
|
+ Dataset indexing will now use the optimized fast path, which was
|
||||||
|
accidentally disabled in a previous version (:pr:`1944`).
|
||||||
|
+ Fix an error building with Cython 3.0 alpha 8 (cpdef inside
|
||||||
|
functions) (:pr:`1923`).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Jun 23 09:37:01 UTC 2021 - andy great <andythe_great@pm.me>
|
||||||
|
|
||||||
|
- Update to version 3.3.0.
|
||||||
|
* New features
|
||||||
|
* Compatibility with the upcoming HDF5 1.12.1 and possibly 1.14.
|
||||||
|
* H5T_BITFIELD types will now be cast to their numpy.uint
|
||||||
|
equivalent by default (:issue:`1258`). This means that
|
||||||
|
no knowledge of mixed type compound dataset schemas is
|
||||||
|
required to read these types, and can simply be read as
|
||||||
|
follows: arr = dset[:]
|
||||||
|
Alternatively, 8-bit bitfields can still be cast to booleans
|
||||||
|
explicitly: arr = dset.astype(numpy.bool_)[:]
|
||||||
|
* Key types are validated when accessing groups, to give more
|
||||||
|
helpful errors when a group is indexed like a dataset.
|
||||||
|
* A new :meth:`.Group.build_virtual_dataset` method acting as
|
||||||
|
a context manager to assemble virtual datasets.
|
||||||
|
* If the source and target of a virtual dataset mapping have
|
||||||
|
different numbers of points, an error should now be thrown
|
||||||
|
when you make the mapping in the :class:`VirtualLayout`,
|
||||||
|
rather than later when writing this into the file. This
|
||||||
|
should make it easier to find the source of such errors.
|
||||||
|
* Deprecations
|
||||||
|
* The default_file_mode config option is deprecated, and setting
|
||||||
|
it to values other than 'r' (for read-only mode) is no longer
|
||||||
|
allowed. Pass the mode when creating a :class:`.File` object
|
||||||
|
instead of setting a global default.
|
||||||
|
* Bug fixes
|
||||||
|
* Trying to open a file in append mode ('a') should now give
|
||||||
|
clearer error messages when the file exists but can't be opened.
|
||||||
|
* Protect :func:`h5py.h5f.get_obj_ids` against garbage collection
|
||||||
|
invalidating HDF5 IDs while it is retrieving them.
|
||||||
|
* Make file closing more robust, including when closing files
|
||||||
|
while the interpreter is shutting down, by using lower-level
|
||||||
|
code to close HDF5 IDs of objects inside the file.
|
||||||
|
- Updates for version 3.2.0.
|
||||||
|
* New features
|
||||||
|
* Added support to use the HDF5 ROS3 driver to access HDF5 files
|
||||||
|
on S3.
|
||||||
|
* Breaking changes & deprecations
|
||||||
|
* Setting the config option default_file_mode to values other
|
||||||
|
than 'r' is deprecated. Pass the desired mode when opening a
|
||||||
|
:class:`~.File` instead.
|
||||||
|
* Exposing HDF5 functions
|
||||||
|
* H5Pset_fapl_ros3 & H5Pget_fapl_ros3 (where HDF5 is built with
|
||||||
|
read-only S3 support).
|
||||||
|
* Bug fixes
|
||||||
|
* :exc:`OSError` exceptions raised by h5py should now have a
|
||||||
|
useful .errno attribute, where HDF5 provides this information.
|
||||||
|
Subclasses such as :exc:`FileNotFoundError` should also be
|
||||||
|
raised where appropriate.
|
||||||
|
* Fix reading data with a datatype of variable-length arrays of
|
||||||
|
fixed length strings.
|
||||||
|
* Fix :meth:`.Dataset.read_direct` and :meth:`.Dataset.write_direct`
|
||||||
|
when the source and destination have different shapes.
|
||||||
|
* Fix selecting data using integer indices in
|
||||||
|
:meth:`.Dataset.read_direct` and :meth:`.Dataset.write_direct`.
|
||||||
|
* Fix exception handling in :meth:`.Group.visititems`.
|
||||||
|
* Issue a warning when File(..., swmr=True) is specified with
|
||||||
|
any mode other than 'r', as the SWMR option is ignored in
|
||||||
|
these cases.
|
||||||
|
* Fix NumPy 1.20 deprecation warnings concerning the use of
|
||||||
|
None as shape, and the deprecated aliases np.float, np.int
|
||||||
|
and np.bool.
|
||||||
|
* 3.2.1 bug fix release
|
||||||
|
* Fix :attr:`.File.driver` when the read-only S3 driver is
|
||||||
|
available.
|
||||||
|
- Rebase python-h5py-relax-dependency-versions.patch
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Feb 18 19:40:45 UTC 2021 - Ben Greiner <code@bnavigator.de>
|
||||||
|
|
||||||
|
- Skip python36 build. NumPy 1.20 in Tumbleweed dropped support for
|
||||||
|
Python 3.6 (NEP 29)
|
||||||
|
- Fix sitearch handling between regular and mpi builds suitable for
|
||||||
|
singlespec with multiple python3 flavors
|
||||||
|
- Refine requirement versions based on Python version
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Jan 20 13:26:43 UTC 2021 - John Vandenberg <jayvdb@gmail.com>
|
||||||
|
|
||||||
|
- Add runtime dependency cached-property based on Python version
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Fri Dec 11 13:48:30 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
|
||||||
|
|
||||||
|
- Replace %__python3 usage by %python_exec.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Fri Dec 4 03:15:34 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
|
||||||
|
|
||||||
|
- Enable parallel hdf5:
|
||||||
|
* Implement multibuild for different flavors of openmpi.
|
||||||
|
* Export env variables `HDF5_LIBDIR` and `HDF5_INCLUDEDIR`
|
||||||
|
pointing to the hdf library and headers location when enabling
|
||||||
|
openmpi flavored builds.
|
||||||
|
* Add BuildRequires: python-pytest-mpi for mpi tests.
|
||||||
|
* Replace python rpm macros with their expansions in most cases
|
||||||
|
to adapt to mpi paths.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Nov 26 14:55:53 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
|
||||||
|
|
||||||
|
- Update to version 3.1.0:
|
||||||
|
* See https://docs.h5py.org/en/latest/whatsnew/3.1.html for list
|
||||||
|
of changes.
|
||||||
|
- Changes from version 3.0.0: See
|
||||||
|
https://docs.h5py.org/en/latest/whatsnew/3.0.html
|
||||||
|
- Drop upstreamed patches:
|
||||||
|
* remove_unittest2.patch.
|
||||||
|
* no_include_opt.patch.
|
||||||
|
- Add python-h5py-relax-dependency-versions.patch to allow building
|
||||||
|
against more recent versions of numpy than minimally required.
|
||||||
|
- Python 2 is no longer supported; at least version 3.6 is
|
||||||
|
required.
|
||||||
|
- Run all tests except:
|
||||||
|
* MPI based ones, as we build against the non-mpi version of
|
||||||
|
hdf5.
|
||||||
|
* Offset test which overflows on 32-bit.
|
||||||
|
- Tests require python-cached-property for openSUSE <= 1500.
|
||||||
|
- Fix `requires_eq` on libhdf5 (oS:F now has libhdf_hl103)
|
||||||
|
already.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon May 11 07:45:48 UTC 2020 - Dirk Mueller <dmueller@suse.com>
|
||||||
|
|
||||||
|
- ensure rebuild when hdf5 version changes (bsc#1150049)
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Fri Sep 13 13:12:21 UTC 2019 - Tomáš Chvátal <tchvatal@suse.com>
|
||||||
|
|
||||||
|
- Update to 2.10.0:
|
||||||
|
* no upstream changelog provided
|
||||||
|
- Update patch remove_unittest2.patch
|
||||||
|
- Remove upstream merged fix_failing_x86_test.patch
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Jul 31 19:43:07 UTC 2019 - Todd R <toddrme2178@gmail.com>
|
||||||
|
|
||||||
|
- Add fix_failing_x86_test.patch
|
||||||
|
Fixes spurious test failure on x86 platfomrs
|
||||||
|
See gh#h5py/h5py#1163
|
||||||
|
From gh#h5py/h5py#1235
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Mar 11 12:38:35 UTC 2019 - Tomáš Chvátal <tchvatal@suse.com>
|
||||||
|
|
||||||
|
- Yodate to 2.9.0:
|
||||||
|
Changes from 2.8.0 are too numerous to list here, complete changelog
|
||||||
|
is available online at https://github.com/h5py/h5py/releases
|
||||||
|
- Drop merged patch adjust_mapping_hdf5_error_codes.patch
|
||||||
|
- Refresh remove_unittest2.patch
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Dec 4 02:51:00 UTC 2018 - Todd R <toddrme2178@gmail.com>
|
||||||
|
|
||||||
|
- Use more reliable test invocation
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Fri Oct 12 15:00:53 UTC 2018 - Matej Cepl <mcepl@suse.com>
|
||||||
|
|
||||||
|
- Remove valuerror-typerror-failing-tests.patch and replace it with
|
||||||
|
proper patch (https://github.com/tacaswell/h5py/commit/6653c65e8c8d0.patch)
|
||||||
|
in adjust_mapping_hdf5_error_codes.patch.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Oct 11 16:34:58 UTC 2018 - Todd R <toddrme2178@gmail.com>
|
||||||
|
|
||||||
|
- Fix ldconfig syntax errors.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Oct 10 14:05:08 UTC 2018 - Matěj Cepl <mcepl@suse.com>
|
||||||
|
|
||||||
|
- Add valuerror-typerror-failing-tests.patch to make two tests pass.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Aug 13 08:55:13 UTC 2018 - mcepl@suse.com
|
||||||
|
|
||||||
|
- Updated to 2.8.0
|
||||||
|
Changes from 2.7.1 are too numerous to list here, complete changelog
|
||||||
|
is available online at https://github.com/h5py/h5py/releases
|
||||||
|
Patch dont_reorder_compund.patch has been included upstream
|
||||||
|
- Remove dependency on unittest2
|
||||||
|
Patch remove_unittest2.patch facilitates the change
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Jan 25 22:04:22 UTC 2018 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Add dont_reorder_compund.patch
|
||||||
|
Fixes builds with numpy 1.14. See:
|
||||||
|
https://github.com/h5py/h5py/issues/969
|
||||||
|
https://github.com/h5py/h5py/pull/970
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Nov 12 17:01:49 UTC 2017 - arun@gmx.de
|
||||||
|
|
||||||
|
- update patch
|
||||||
|
|
||||||
|
- update to version 2.7.1:
|
||||||
|
* Bug fixes
|
||||||
|
+ :issue:`903` Fixed critical issue with cyclic gc which resulted
|
||||||
|
in segfaults
|
||||||
|
+ :issue:`904` Avoid unaligned access fixing h5py on sparc64
|
||||||
|
+ :issue:`883` Fixed compilation issues for some library locations
|
||||||
|
+ :issue:`868` Fix deadlock between phil and the import lock in
|
||||||
|
py2
|
||||||
|
+ :issue:`841` Improve windows handling if filenames
|
||||||
|
+ :issue:`874` Allow close to be called on file multiple times
|
||||||
|
+ :issue:`867`, :issue:`872` Warn on loaded vs complied hdf5
|
||||||
|
version issues
|
||||||
|
+ :issue:`902` Fix overflow computing size of dataset on windows
|
||||||
|
+ :issue:`912` Do not mangle capitalization of filenames in error
|
||||||
|
messages
|
||||||
|
+ :issue:`842` Fix longdouble on ppc64le
|
||||||
|
+ :issue:`862`, :issue:`916` Fix compounds structs with
|
||||||
|
variable-size members
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu May 11 18:04:04 UTC 2017 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Implement single-spec version
|
||||||
|
- Fix source URL
|
||||||
|
- Update to version 0.2.7
|
||||||
|
* Python 3.2 is no longer supported
|
||||||
|
* Improved testing support
|
||||||
|
* Improved python compatibility
|
||||||
|
* Documentation improvements
|
||||||
|
* setup.py improvements
|
||||||
|
* Support for additional HDF5 features added
|
||||||
|
* Improvements to type system
|
||||||
|
- Update to version 0.2.6
|
||||||
|
* Support for HDF5 Virtual Dataset API
|
||||||
|
* Add MPI Collective I/O Support
|
||||||
|
* Numerous build/testing/CI improvements
|
||||||
|
* Cleanup of codebase based on pylint
|
||||||
|
* Fixes to low-level API
|
||||||
|
* Documentation improvements
|
||||||
|
- Add no_include_opt.patch to avoid including forbidden
|
||||||
|
directories.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Jul 28 10:34:21 UTC 2015 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Fix hdf5 version ambiguity
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Fri Apr 10 14:15:27 UTC 2015 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- specfile:
|
||||||
|
* changed from 2to3 to six
|
||||||
|
* added build requirement for python3-pkgconfig
|
||||||
|
* added Cython requirement for install
|
||||||
|
* update copyright year
|
||||||
|
- update to version 2.5.0:
|
||||||
|
* Experimental SWMR support
|
||||||
|
* Group and AttributeManager classes now inherit from the appropriate ABCs
|
||||||
|
* Fixed an issue with 64-bit float VLENS
|
||||||
|
* Cython warning cleanups related to "const"
|
||||||
|
* Entire code base ported to "six"; 2to3 removed from setup.py
|
||||||
|
- update to version 2.4.0:
|
||||||
|
* This release incorporates a total re-write of the identifier
|
||||||
|
management system in h5py. As part of this refactoring, the entire
|
||||||
|
API is also now protected by threading locks.
|
||||||
|
* Files are now automatically closed when all objects within them
|
||||||
|
are unreachable. Previously, if File.close() was not explicitly
|
||||||
|
closed, files would remain open and "leaks" were possible if the
|
||||||
|
File object was lost.
|
||||||
|
* The entire API is now believed to be thread-safe (feedback
|
||||||
|
welcome!).
|
||||||
|
* External links now work if the target file is already
|
||||||
|
open. Previously this was not possible because of a mismatch in
|
||||||
|
the file close strengths.
|
||||||
|
* The options to setup.py have changed; a new top-level "configure"
|
||||||
|
command handles options like --hdf5=/path/to/hdf5 and
|
||||||
|
--mpi. Setup.py now works correctly under Python 3 when these
|
||||||
|
options are used.
|
||||||
|
* Cython (0.17+) is now required when building from source.
|
||||||
|
* The minimum NumPy version is now 1.6.1.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Jul 17 09:35:21 UTC 2014 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Update download url
|
||||||
|
- spec file cleanups
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Jul 14 16:20:53 UTC 2014 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Update to 2.3.1
|
||||||
|
- Bugfix release which fixes a build issue when using the most
|
||||||
|
recent version of HDF5 (1.8.13), and some issues with Travis-CI.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu May 8 11:23:35 UTC 2014 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Update to version 2.3.0
|
||||||
|
- Support for arbitrary vlen data
|
||||||
|
- Improved exception messages
|
||||||
|
- Improved setuptools support
|
||||||
|
- Multiple low-level additions
|
||||||
|
- Improved support for MPI features
|
||||||
|
- Readonly files can now be opened in default mode
|
||||||
|
- Single-step build for HDF5 on Windows
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Dec 16 13:56:43 UTC 2013 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Update to version 2.2.1
|
||||||
|
+ Critical bugfixes
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Dec 10 14:28:44 UTC 2013 - p.drouand@gmail.com
|
||||||
|
|
||||||
|
- Update to version 2.2.0
|
||||||
|
+ This version of h5py introduces support for MPI/Parallel HDF5,
|
||||||
|
using the mpi4py package. Parallel HDF5 is the "native" method
|
||||||
|
in HDF5 for sharing files and objects across multiple processes,
|
||||||
|
in contrast to the "threading" package or "multiprocessing".
|
||||||
|
There is a guide to using Parallel HDF5 at the h5py web site:
|
||||||
|
http://www.h5py.org/docs/topics/mpi.html
|
||||||
|
+ Support for Python 3.3
|
||||||
|
+ Support for 16-bit "mini" floats
|
||||||
|
+ Access to the HDF5 scale-offset filter
|
||||||
|
+ Field names are now allowed when writing to a dataset
|
||||||
|
+ Region references now preserve the shape of their selections
|
||||||
|
+ File-resident "committed" types can be linked to datasets and attributes
|
||||||
|
+ Make object mtime tracking optional
|
||||||
|
+ A new "move" method on Group objects
|
||||||
|
+ Many new options for Group.copy
|
||||||
|
+ Access to HDF5's get_vfd_handle
|
||||||
|
+ Many bug fixes
|
||||||
|
- Remove depreciated %{py_requires}
|
||||||
|
- Remove redundant %clen section
|
||||||
|
- Remove useless %post/postun sections
|
||||||
|
- Package ANN.rst, lzf/LICENSE.txt, lzf/README.txt and examples to
|
||||||
|
documentation directory
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Apr 24 03:45:08 UTC 2013 - highwaystar.ru@gmail.com
|
||||||
|
|
||||||
|
- update to version 2.1.3
|
||||||
|
- no changelog
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Nov 25 11:34:42 UTC 2012 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Update to 2.1.0
|
||||||
|
- No changelog
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Apr 26 02:33:56 UTC 2012 - highwaystar.ru@gmail.com
|
||||||
|
|
||||||
|
- python3 package added
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Jan 8 00:47:03 UTC 2012 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- new version 2.0.1
|
||||||
|
- cleaned up spec file
|
||||||
|
- merged changes lists
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Aug 4 02:44:19 UTC 2011 - highwaystar.ru@gmail.com
|
||||||
|
|
||||||
|
- version bump to 2.0.0
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun May 29 00:00:00 UTC 2011 - werner.ho@gmx.de
|
||||||
|
|
||||||
|
- fixed hdf5-devel package name change
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Mar 17 00:00:00 UTC 2011 - werner.ho@gmx.de
|
||||||
|
|
||||||
|
- new version 1.3.1
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Sep 19 00:00:00 UTC 2010 - werner.ho@gmx.de
|
||||||
|
|
||||||
|
- fixed libhdf5-dependancy
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Jul 5 03:12:54 UTC 2010 - highwaystar.ru@gmail.com
|
||||||
|
|
||||||
|
- fixed libhdf5-devel to hdf5-devel
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Mar 22 08:39:48 UTC 2010 - highwaystar.ru@gmail.com
|
||||||
|
|
||||||
|
- initial release for openSUSE
|
||||||
|
- version 1.3.0
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Mar 22 00:00:00 UTC 2010 - tomin@frame10
|
||||||
|
|
||||||
|
- initial build for openSUSE
|
||||||
140
python-h5py.spec
Normal file
140
python-h5py.spec
Normal file
@ -0,0 +1,140 @@
|
|||||||
|
#
|
||||||
|
# spec file
|
||||||
|
#
|
||||||
|
# Copyright (c) 2023 SUSE LLC
|
||||||
|
#
|
||||||
|
# All modifications and additions to the file contributed by third parties
|
||||||
|
# remain the property of their copyright owners, unless otherwise agreed
|
||||||
|
# upon. The license for this file, and modifications and additions to the
|
||||||
|
# file, is the same license as for the pristine package itself (unless the
|
||||||
|
# license for the pristine package is not an Open Source License, in which
|
||||||
|
# case the license is the MIT License). An "Open Source License" is a
|
||||||
|
# license that conforms to the Open Source Definition (Version 1.9)
|
||||||
|
# published by the Open Source Initiative.
|
||||||
|
|
||||||
|
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
||||||
|
#
|
||||||
|
|
||||||
|
|
||||||
|
%global flavor @BUILD_FLAVOR@%{nil}
|
||||||
|
%define pname python-h5py
|
||||||
|
# SECTION MPI DEFINITIONS
|
||||||
|
%if "%{flavor}" == "openmpi4"
|
||||||
|
%global mpi_flavor openmpi
|
||||||
|
%define mpi_vers 4
|
||||||
|
%endif
|
||||||
|
%if "%{flavor}" == "openmpi5"
|
||||||
|
%global mpi_flavor openmpi
|
||||||
|
%define mpi_vers 5
|
||||||
|
%endif
|
||||||
|
|
||||||
|
%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}
|
||||||
|
%{?with_mpi:%{!?mpi_flavor:error "No MPI family specified!"}}
|
||||||
|
|
||||||
|
%if %{with mpi}
|
||||||
|
%define my_prefix %{_libdir}/mpi/gcc/%{mpi_flavor}%{?mpi_vers}
|
||||||
|
%define my_bindir %{my_prefix}/bin
|
||||||
|
%define my_libdir %{my_prefix}/%{_lib}
|
||||||
|
%define my_incdir %{my_prefix}/include
|
||||||
|
%define my_suffix -%{mpi_flavor}%{?mpi_vers}
|
||||||
|
%define my_sitearch_in_expand %{my_libdir}/python%{$python_version}/site-packages
|
||||||
|
%else
|
||||||
|
%define my_prefix %{_prefix}
|
||||||
|
%define my_bindir %{_bindir}
|
||||||
|
%define my_libdir %{_libdir}
|
||||||
|
%define my_incdir %{_includedir}
|
||||||
|
%define my_datadir %{_datadir}
|
||||||
|
%define my_sitearch_in_expand %{$python_sitearch}
|
||||||
|
%endif
|
||||||
|
# /SECTION MPI DEFINITIONS
|
||||||
|
Name: %{pname}%{?my_suffix}
|
||||||
|
Version: 3.10.0
|
||||||
|
Release: 0
|
||||||
|
Summary: Python interface to the Hierarchical Data Format library
|
||||||
|
License: BSD-3-Clause
|
||||||
|
Group: Development/Libraries/Python
|
||||||
|
URL: https://github.com/h5py/h5py
|
||||||
|
Source: https://files.pythonhosted.org/packages/source/h/h5py/h5py-%{version}.tar.gz
|
||||||
|
BuildRequires: %{python_module Cython >= 0.29 with %python-Cython < 1}
|
||||||
|
BuildRequires: %{python_module devel >= 3.8}
|
||||||
|
BuildRequires: %{python_module numpy-devel >= 1.17.3}
|
||||||
|
BuildRequires: %{python_module pip}
|
||||||
|
BuildRequires: %{python_module pkgconfig}
|
||||||
|
BuildRequires: %{python_module pytest}
|
||||||
|
BuildRequires: %{python_module setuptools >= 61}
|
||||||
|
BuildRequires: %{python_module wheel}
|
||||||
|
BuildRequires: fdupes
|
||||||
|
BuildRequires: hdf5%{?my_suffix}-devel
|
||||||
|
BuildRequires: python-rpm-macros
|
||||||
|
%requires_eq hdf5%{?my_suffix}
|
||||||
|
%requires_eq libhdf5%{?my_suffix}
|
||||||
|
Requires: python-numpy >= 1.17.3
|
||||||
|
%if %{with mpi}
|
||||||
|
BuildRequires: %{mpi_flavor}%{mpi_vers}-devel
|
||||||
|
BuildRequires: %{python_module mpi4py >= 3.1.1 if %python-base < 3.11}
|
||||||
|
BuildRequires: %{python_module mpi4py >= 3.1.4 if %python-base >= 3.11}
|
||||||
|
BuildRequires: %{python_module pytest-mpi}
|
||||||
|
Requires: python-mpi4py >= 3.1.1
|
||||||
|
%endif
|
||||||
|
%python_subpackages
|
||||||
|
|
||||||
|
%description
|
||||||
|
H5py provides a simple, robust read/write interface to HDF5 data from Python.
|
||||||
|
Existing Python and Numpy concepts are used for the interface; for example,
|
||||||
|
datasets on disk are represented by a proxy class that supports slicing, and
|
||||||
|
has dtype and shape attributes. HDF5 groups are presented using a dictionary
|
||||||
|
metaphor, indexed by name.
|
||||||
|
|
||||||
|
%prep
|
||||||
|
%autosetup -p1 -n h5py-%{version}
|
||||||
|
|
||||||
|
%build
|
||||||
|
%if %{with mpi}
|
||||||
|
source %{my_bindir}/mpivars.sh
|
||||||
|
export CC=mpicc
|
||||||
|
export HDF5_MPI="ON"
|
||||||
|
export HDF5_LIBDIR=%{my_libdir}
|
||||||
|
export HDF5_INCLUDEDIR=%{my_incdir}
|
||||||
|
%endif
|
||||||
|
export CFLAGS="%{optflags} -fno-strict-aliasing"
|
||||||
|
%pyproject_wheel
|
||||||
|
|
||||||
|
%install
|
||||||
|
%if %{with mpi}
|
||||||
|
%pyproject_install --prefix %{my_prefix}
|
||||||
|
%else
|
||||||
|
%pyproject_install
|
||||||
|
%endif
|
||||||
|
%python_expand %fdupes %{buildroot}%{my_sitearch_in_expand}/h5py/
|
||||||
|
|
||||||
|
%check
|
||||||
|
donttest="dummytest"
|
||||||
|
%ifarch %{ix86} %{arm}
|
||||||
|
# overflow
|
||||||
|
donttest="test_float_round_tripping or test_register_filter"
|
||||||
|
%endif
|
||||||
|
%{python_expand #
|
||||||
|
%if %{with mpi}
|
||||||
|
source %{my_bindir}/mpivars.sh
|
||||||
|
%endif
|
||||||
|
export LD_LIBRARY_PATH=%{my_libdir}
|
||||||
|
export PYTHONPATH=%{buildroot}%{my_sitearch_in_expand}
|
||||||
|
export PYTHONDONTWRITEBYTECODE=1
|
||||||
|
pytest-%{$python_bin_suffix} %{buildroot}%{my_sitearch_in_expand}/h5py/ \
|
||||||
|
%{?with_mpi:-k "not ($donttest)" -m 'not mpi_skip'}%{!?with_mpi:-k "not (TestMPI or $donttest)"}
|
||||||
|
}
|
||||||
|
|
||||||
|
%files %{python_files}
|
||||||
|
%license lzf/LICENSE.txt
|
||||||
|
%doc README.rst lzf/README.txt examples licenses/*
|
||||||
|
%if %{with mpi}
|
||||||
|
%dir %{my_libdir}/python%{python_version}
|
||||||
|
%dir %{my_libdir}/python%{python_version}/site-packages
|
||||||
|
%{my_libdir}/python%{python_version}/site-packages/h5py
|
||||||
|
%{my_libdir}/python%{python_version}/site-packages/h5py-%{version}*-info
|
||||||
|
%else
|
||||||
|
%{python_sitearch}/h5py/
|
||||||
|
%{python_sitearch}/h5py-%{version}*-info
|
||||||
|
%endif
|
||||||
|
|
||||||
|
%changelog
|
||||||
Loading…
Reference in New Issue
Block a user