Sync from SUSE:ALP:Source:Standard:1.0 python-netCDF4 revision ffaf4a00acc99dd7aefc20cad696914f
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.gitattributes
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.jar filter=lfs diff=lfs merge=lfs -text
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*.lz filter=lfs diff=lfs merge=lfs -text
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*.lzma filter=lfs diff=lfs merge=lfs -text
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*.obscpio filter=lfs diff=lfs merge=lfs -text
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*.oxt filter=lfs diff=lfs merge=lfs -text
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*.pdf filter=lfs diff=lfs merge=lfs -text
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*.png filter=lfs diff=lfs merge=lfs -text
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*.rpm filter=lfs diff=lfs merge=lfs -text
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*.tbz filter=lfs diff=lfs merge=lfs -text
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.ttf filter=lfs diff=lfs merge=lfs -text
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*.txz filter=lfs diff=lfs merge=lfs -text
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*.whl filter=lfs diff=lfs merge=lfs -text
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*.xz filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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7
_constraints
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7
_constraints
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|||||||
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<constraints>
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||||||
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<hardware>
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||||||
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<disk>
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||||||
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<size unit="G">5</size>
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||||||
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</disk>
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||||||
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</hardware>
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||||||
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</constraints>
|
||||||
BIN
netCDF4-1.6.5.tar.gz
(Stored with Git LFS)
Normal file
BIN
netCDF4-1.6.5.tar.gz
(Stored with Git LFS)
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Binary file not shown.
523
python-netCDF4.changes
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python-netCDF4.changes
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-------------------------------------------------------------------
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||||||
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Thu Jan 18 13:25:55 UTC 2024 - Daniel Garcia <daniel.garcia@suse.com>
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||||||
|
|
||||||
|
- Disable broken tests for s390x, gh#Unidata/netcdf4-python#1124,
|
||||||
|
bsc#1218606
|
||||||
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|
||||||
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-------------------------------------------------------------------
|
||||||
|
Thu Dec 7 22:10:52 UTC 2023 - Dirk Müller <dmueller@suse.com>
|
||||||
|
|
||||||
|
- update to 1.6.5:
|
||||||
|
* fix for issue #1271 (mask ignored if bool MA assinged to
|
||||||
|
uint8 var)
|
||||||
|
* include information on specific object when reporting errors
|
||||||
|
from netcdf-c
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Sep 10 17:08:14 UTC 2023 - Ben Greiner <code@bnavigator.de>
|
||||||
|
|
||||||
|
- Update to 1.6.4
|
||||||
|
* set path to SSL certificates internally, so https DAP URLs work
|
||||||
|
with wheels (issue #1246, requires nc_rc_set function available
|
||||||
|
starting with netcdf-c 4.9.1, plus bugfix in netcdf-c PR #2690).
|
||||||
|
* Added certifi as a dependency.
|
||||||
|
* Added `isopen` method to `MFDataset` object to check if
|
||||||
|
underlying files are open.
|
||||||
|
- Version 1.6.3
|
||||||
|
* Use ``nc_put_vars`` for strided writes for netcdf-c >= 4.6.2
|
||||||
|
(issue #1222).
|
||||||
|
* _Unsigned="false" should be same as not having _Unsigned set
|
||||||
|
(issue #1232). _Unsigned now must be set to "true" or "True" for
|
||||||
|
variable to be interpreted as unsigned, instead of just having
|
||||||
|
_Unsigned be set (to anything).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sat Jan 7 12:25:27 UTC 2023 - Dirk Müller <dmueller@suse.com>
|
||||||
|
|
||||||
|
- update to 1.6.2:
|
||||||
|
* Added ``netCDF4.__has_set_alignment__`` property to help identify if the
|
||||||
|
underlying netcdf4 supports setting the HDF5 alignment.
|
||||||
|
* Slicing multi-dimensional variables with an all False boolean index array
|
||||||
|
now returns an empty numpy array (instead of raising an exception - issue #1197).
|
||||||
|
Behavior now consistent with numpy slicing.
|
||||||
|
* fix problem with compiling using netcdf-c < 4.9.0 (issue #1209)
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Fri Sep 16 19:56:27 UTC 2022 - Arun Persaud <arun@gmx.de>
|
||||||
|
|
||||||
|
- update to version 1.6.1:
|
||||||
|
* add Dataset methods has_<name>_filter (where <name>=zstd,blosc,bzip2,szip)
|
||||||
|
to check for availability of extra compression filters.
|
||||||
|
* release GIL for all C-lib calls (issue #1180).
|
||||||
|
* Add support for nc_set_alignment and nc_get_alignment to control alignment
|
||||||
|
of data within HDF5 files.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Jul 11 03:01:26 UTC 2022 - Arun Persaud <arun@gmx.de>
|
||||||
|
|
||||||
|
- specfile:
|
||||||
|
* require python >= 3.7 (remove skip python 2 and 3.6 and replace with base >= 3.7)
|
||||||
|
|
||||||
|
- update to version 1.6.0:
|
||||||
|
* add support for new quantization functionality in netcdf-c 4.9.0 via "signficant_digits"
|
||||||
|
and "quantize_mode" kwargs in Dataset.createVariable. Default quantization_mode is "BitGroom",
|
||||||
|
but alternate methods "BitRound" and GranularBitRound" also supported.
|
||||||
|
* opening a Dataset in append mode (mode = 'a' or 'r+') creates a Dataset
|
||||||
|
if one does not already exist (similar to python open builtin). Issue #1144.
|
||||||
|
Added a mode='x' option (as in python open) which is the same as mode='w' with
|
||||||
|
clobber=False.
|
||||||
|
* allow createVariable to accept either Dimension instances or Dimension
|
||||||
|
names in "dimensions" tuple kwarg (issue #1145).
|
||||||
|
* remove all vestiges of python 2 in _netCDF4.pyx and set cython language_level
|
||||||
|
directive to 3 in setup.py.
|
||||||
|
* add 'compression' kwarg to createVariable to enable new compression
|
||||||
|
functionality in netcdf-c 4.9.0. 'None','zlib','szip','zstd','bzip2'
|
||||||
|
'blosc_lz','blosc_lz4','blosc_lz4hc','blosc_zlib' and 'blosc_zstd'
|
||||||
|
are currently supported. 'blosc_shuffle',
|
||||||
|
'szip_mask' and 'szip_pixels_per_block' kwargs also added.
|
||||||
|
compression='zlib' is equivalent to (the now deprecated) zlib=True.
|
||||||
|
If the environment variable NETCDF_PLUGIN_DIR is set to point to the
|
||||||
|
directory with the compression plugin lib__nc* files, then the compression plugins will
|
||||||
|
be installed within the package and be automatically available (the binary
|
||||||
|
wheels have this). Otherwise, the environment variable HDF5_PLUGIN_PATH
|
||||||
|
needs to be set at runtime to point to plugins in order to use the new compression
|
||||||
|
options.
|
||||||
|
* MFDataset did not aggregate 'name' variable attribute (issue #1153).
|
||||||
|
* issue warning instead of raising an exception if missing_value or
|
||||||
|
_FillValue can't be cast to the variable type when creating a
|
||||||
|
masked array (issue #1152).
|
||||||
|
* Define MPI_Session for compatibility with current mpi4py (PR #1156).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Feb 10 04:21:12 UTC 2022 - Arun Persaud <arun@gmx.de>
|
||||||
|
|
||||||
|
- specfile:
|
||||||
|
* update copyright year
|
||||||
|
|
||||||
|
- update to version 1.5.8:
|
||||||
|
* Fix Enum bug (issue #1128): the enum_dict member of an EnumType
|
||||||
|
read from a file contains invalid values when the enum is large
|
||||||
|
enough (more than 127 or 255 members).
|
||||||
|
* Binary wheels for aarch64 and python 3.10.
|
||||||
|
|
||||||
|
- changes from version 1.5.7:
|
||||||
|
* don't try to mask vlens with default _FillValue, since vlens don't
|
||||||
|
have a default _FillValue. This gets rid of numpy
|
||||||
|
DeprecationWarning (issue #1099).
|
||||||
|
* update docs to reflect the fact that a variable must be in
|
||||||
|
collective mode before writing compressed data to it in
|
||||||
|
parallel. Added a test for this
|
||||||
|
(examples/mpi_example_compressed.py). Issue #1108.
|
||||||
|
* Fix OverflowError when dimension sizes become greater than 2**32-1
|
||||||
|
elements on Windows (Issue #1112).
|
||||||
|
* Don't return masked arrays for vlens (only for primitive and enum
|
||||||
|
types - issue #1115).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Feb 21 21:06:58 UTC 2021 - Ben Greiner <code@bnavigator.de>
|
||||||
|
|
||||||
|
- Update to 1.5.6
|
||||||
|
* change numpy.bool to numpy.bool_ and numpy.float to
|
||||||
|
numpy.float_ (float and bool are deprecated in numpy 1.20,
|
||||||
|
issue #1065)
|
||||||
|
* clean up docstrings so that they work with latest pdoc.
|
||||||
|
* update cython numpy API to remove deprecation warnings.
|
||||||
|
* Add "fromcdl" and "tocdl" Dataset methods for import/export of
|
||||||
|
CDLvia ncdump/ncgen called externally via the subprocess module
|
||||||
|
(issue #1078).
|
||||||
|
* remove python 2.7 support.
|
||||||
|
* broadcast data (if possible) to conform to variable shape when
|
||||||
|
writing to a slice (issue #1083).
|
||||||
|
- Release 1.5.5
|
||||||
|
* have setup.py always try use nc-config first to find paths to
|
||||||
|
netcdf and hdf5 libraries and headers. Don't use pkg-config to
|
||||||
|
find HDF5 if HDF5 env vars are set (or read from setup.cfg).
|
||||||
|
* Change MIT license text to standard OSI wording (PR #1046).
|
||||||
|
- Skip python36 build: With NumPy 1.20, python36-numpy is no
|
||||||
|
longer available in Tumbleweed (NEP 29)
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Dec 8 13:05:52 UTC 2020 - Dirk Stoecker <opensuse@dstoecker.de>
|
||||||
|
|
||||||
|
- Drop wrong hdf4 requirements
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sat Jul 25 15:33:53 UTC 2020 - Arun Persaud <arun@gmx.de>
|
||||||
|
|
||||||
|
- update to version 1.5.4:
|
||||||
|
* fix printing of variable objects for variables that end with the
|
||||||
|
letter 'u' (issue #983).
|
||||||
|
* make sure root group has 'name' attribute (issue #988).
|
||||||
|
* add the ability to pack vlen floats to integers using
|
||||||
|
scale_factor/add_offset (issue #1003)
|
||||||
|
* use len instead of deprecated numpy.alen (issue #1008)
|
||||||
|
* check size on valid_range instead of using len (issue #1013).
|
||||||
|
* add `set_chunk_cache/get_chunk_cache` module functions to reset
|
||||||
|
the default chunk cache sizes before opening a Dataset (issue
|
||||||
|
#1018).
|
||||||
|
* replace use of numpy's deprecated tostring() method with tobytes()
|
||||||
|
(issue #1023).
|
||||||
|
* bump minimal numpy version to 1.9 (first version to have
|
||||||
|
tobytes()).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Jul 22 15:07:22 UTC 2020 - Michel Normand <normand@linux.vnet.ibm.com>
|
||||||
|
|
||||||
|
- Add _constraints with default 5G min disk space
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu May 21 10:56:35 UTC 2020 - Petr Gajdos <pgajdos@suse.com>
|
||||||
|
|
||||||
|
- %python3_only -> %python_alternative
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Nov 19 20:48:10 UTC 2019 - Todd R <toddrme2178@gmail.com>
|
||||||
|
|
||||||
|
- Update to 1.5.3:
|
||||||
|
* make sure arrays are masked that are not filled when auto_fill is off
|
||||||
|
* python 3.8 binary wheels.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Oct 8 09:09:31 UTC 2019 - Tomáš Chvátal <tchvatal@suse.com>
|
||||||
|
|
||||||
|
- Update to 1.5.2:
|
||||||
|
* fix for scaling bug when _Unsigned attribute is set and byteorder of data
|
||||||
|
does not match native byteorder (issue #930).
|
||||||
|
* revise documentation for Python 3 (issue #946).
|
||||||
|
* establish support for Python 2.7, 3.5, 3.6 and 3.7 (issue #948).
|
||||||
|
* use dict built-in instead of OrderedDict for Python 3.7+
|
||||||
|
(pull request #955).
|
||||||
|
* remove underline ANSI in Dataset string representation (pull request #956).
|
||||||
|
* remove newlines from string representation (pull request #960).
|
||||||
|
* fix for issue #957 (size of scalar var is a float since numpy.prod(())=1.0).
|
||||||
|
* make sure Variable.setncattr fails to set _FillValue (issue #959).
|
||||||
|
* fix detection of parallel HDF5 support with netcdf-c 4.6.1 (issue #964).
|
||||||
|
- Remove not needed netcdf-disable-broken-test.patch as the bug was
|
||||||
|
fixed in netcdf itself
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Jun 4 11:44:56 UTC 2019 - Marketa Calabkova <mcalabkova@suse.com>
|
||||||
|
|
||||||
|
- Update to 1.5.1.2
|
||||||
|
* fix for issue #919 (assigning 2d array to 3d variable with singleton
|
||||||
|
first dimension with v[:] = a).
|
||||||
|
* minimum numpy changed from 1.9.0 to 1.10.0.
|
||||||
|
* fix issue #908 by adding workaround for incorrect value returned
|
||||||
|
by nc_inq_var_fill for netcdf-c < 4.5.1.
|
||||||
|
* fix bug writing slice to unlimited dimension that is not the first
|
||||||
|
(leftmost). Issue #906.
|
||||||
|
* make sure data gets converted to type of scale_factor when add_offset=0
|
||||||
|
and scale_factor=1 (issue #913).
|
||||||
|
* fix for reading empty (NIL) string attributes (issue #915).
|
||||||
|
* add read-shared mode (mode='rs'). Significantly speeds up reads of NETCDF3
|
||||||
|
files (pull request #902).
|
||||||
|
* added support for parallel IO in the classic netcdf-3 formats through the
|
||||||
|
pnetcdf library (pull request #897).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Mar 20 16:36:46 CET 2019 - Matej Cepl <mcepl@suse.com>
|
||||||
|
|
||||||
|
- Update to 1.4.3.2
|
||||||
|
* include missing membuf.pyx file in release source tarball.
|
||||||
|
* fix bug in implementation of NETCDF4_CLASSIC support for parallel IO
|
||||||
|
in v1.4.3 release.
|
||||||
|
* make set_always_mask work in MFDataset.
|
||||||
|
* fix saving diskless files to disk with netcdf-c >= 4.6.2.
|
||||||
|
* write to an in-memory Dataset, memoryview buffer returned by Dataset.close()
|
||||||
|
(issue #865, requires netcdf-c >= 4.6.2)
|
||||||
|
* fix performance regression when using large sequences of consecutive
|
||||||
|
integers for indexing with netcdf-c >= 4.6.2 (issue #870).
|
||||||
|
* improved error messages for ncinfo and other utilities (issue #873).
|
||||||
|
* fix for int64 attributes not being created for NETCDF3_64BIT_DATA (CDF5)
|
||||||
|
files (issue #878).
|
||||||
|
* fix for MPI parallel error ("NetCDF: Attempt to use feature that was not
|
||||||
|
turned on when netCDF was built") using netcdf-c 4.6.2 (issue #883).
|
||||||
|
* Added methods `set_ncstring_attrs()` to Dataset, Group and Variable that
|
||||||
|
forces all text attributes to be written as variable length strings (netCDF
|
||||||
|
type NC_STRING - issue #882).
|
||||||
|
* Allow parallel mode with NETCDF4_CLASSIC files (issue #890).
|
||||||
|
* add get_dims Variable method (issue #824)
|
||||||
|
* make sure format keyword not ignored when mode is 'ws' (issue #827)
|
||||||
|
* fix numpy FutureWarning (non-tuple sequence for
|
||||||
|
multidimensional indexing is deprecated), issue #833.
|
||||||
|
* add 'master_file' kwarg to MFDataset.__init__ (issue #835).
|
||||||
|
* always use nc_get_vars for strided access over OpenDAP (issue #838).
|
||||||
|
* raise FutureWarning when trying to set multi-dimensional array attribute
|
||||||
|
while still silently flattening the array (issue #841). Will change
|
||||||
|
to ValueError in next release (1.4.3).
|
||||||
|
* fix parallel writes when both nc4 parallel and pnetcdf parallel options
|
||||||
|
enabled in the netcdf-c library (issue #820).
|
||||||
|
* fix for writing masked scalar character variable (issue #850).
|
||||||
|
* disable workaround for slow nc_get_vars for __netcdflibversion__ >= 4.6.2,
|
||||||
|
since a fix was added to speed up nc_get_vars in the C library. Issue 680.
|
||||||
|
* new Dataset and Variable methods (set_always_mask) to optionally
|
||||||
|
re-enable old behaviour (return masked arrays only if selected
|
||||||
|
slice contains missing values) (issue #809).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu May 17 10:38:13 UTC 2018 - tchvatal@suse.com
|
||||||
|
|
||||||
|
- Add patch netcdf-disable-broken-test.patch
|
||||||
|
* This test got "broken" with the new netcdf that fixed another
|
||||||
|
problem https://github.com/Unidata/netcdf4-python/issues/752
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu May 17 09:57:50 UTC 2018 - tchvatal@suse.com
|
||||||
|
|
||||||
|
- Version update to 1.4.0:
|
||||||
|
* fixed bug in detection of CDF5 library support in setup.py (pull request
|
||||||
|
#736, issue #713).
|
||||||
|
* fixed reading of variables with zero-length dimensions in NETCDF3_CLASSIC
|
||||||
|
files (issue #743).
|
||||||
|
* allow integer-like objects in VLEN slices (not just python ints, issue
|
||||||
|
#526, pull request #757).
|
||||||
|
* treating _FillValue as a valid_min/valid_max was too surprising, despite
|
||||||
|
the fact the thet netcdf docs 'attribute best practices' suggests that
|
||||||
|
clients should to this. Revert this change from issue #576 (issue #761).
|
||||||
|
* remove netcdftime, since it is now a separate package. date2num, num2date
|
||||||
|
and date2index still importable from netCDF4.
|
||||||
|
* fix 'Unreachable code' cython warning (issue #767).
|
||||||
|
* Change behavior of string attributes so that nc.stringatt = ['foo','bar']
|
||||||
|
produces an vlen string array attribute in NETCDF4, instead of concatenating
|
||||||
|
into a single string ('foobar'). In NETCDF3/NETCDF4_CLASSIC, an IOError
|
||||||
|
is now raised, instead of writing 'foobar'. Issue #770.
|
||||||
|
* fix loading of enum type names (issue #775).
|
||||||
|
* make sure missing_value applies only to scaled short integers if
|
||||||
|
auto-scaling is on (issue #777).
|
||||||
|
* automatically create views of compound types with character arrays as
|
||||||
|
numpy strings (issue #773). Can be disabled using
|
||||||
|
'set_auto_chartostring(False)'. Numpy structured
|
||||||
|
array dtypes with 'SN' string subtypes can now be used to
|
||||||
|
define netcdf compound types (they get converted to ('S1',N)
|
||||||
|
character array types automatically).
|
||||||
|
* always return masked array by default, even if there are no
|
||||||
|
masked values (too surprising to get ndarray or MaskedArray depending
|
||||||
|
on slice, issue #785).
|
||||||
|
* treat valid_min/valid_max/_FillValue/missing_value as unsigned
|
||||||
|
integers if _Unsigned is set (to mimic behaviour of netcdf-java).
|
||||||
|
Conversion to unsigned type now occurs before masking and scale/offset
|
||||||
|
operation. Issue #794.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Mar 1 22:03:20 UTC 2018 - sebix+novell.com@sebix.at
|
||||||
|
|
||||||
|
- update to version 1.3.1:
|
||||||
|
* add parallel IO capabilities. netcdf-c and hdf5 must be compiled with MPI
|
||||||
|
support, and mpi4py must be installed. To open a file for parallel access,
|
||||||
|
use `parallel=True` in `Dataset.__init__` and optionally pass the mpi4py Comm instance
|
||||||
|
using the `comm` kwarg and the mpi4py Info instance using the `info` kwarg.
|
||||||
|
IO can be toggled between collective and independent using `Variable.set_collective`.
|
||||||
|
See `examples/mpi_example.py`. Issue #717, pull request #716.
|
||||||
|
Minimum cython dependency bumped from 0.19 to 0.21.
|
||||||
|
* Add optional `MFTime` calendar overload to use across all files, for example,
|
||||||
|
`'standard'` or `'gregorian'`. If `None` (the default), check that the calendar
|
||||||
|
attribute is present on each variable and values are unique across files raising
|
||||||
|
a `ValueError` otherwise.
|
||||||
|
* Allow _FillValue to be set for vlen string variables (issue #730).
|
||||||
|
- update to version 1.3.0:
|
||||||
|
* always search for HDF5 headers when building, even when nc-config is used
|
||||||
|
(since nc-config does not always include the path to the HDF5 headers).
|
||||||
|
Also use H5get_libversion to obtain HDF5 version info instead of
|
||||||
|
H5public.h. Fixes issue #677.
|
||||||
|
* encoding kwarg added to Dataset.__init__ and Dataset.filepath (default
|
||||||
|
is to use sys.getfilesystemencoding()) so that oddball
|
||||||
|
encodings (such as cp1252 on windows) can be handled in Dataset
|
||||||
|
filepaths (issue #686).
|
||||||
|
* Calls to nc_get_vars are avoided, since nc_get_vars is very slow (issue
|
||||||
|
#680). Strided slices are now converted to multiple calls to
|
||||||
|
nc_get_vara. This speeds up strided slice reads by a factor of 10-100
|
||||||
|
(especially for NETCDF4/HDF5 files) in most cases. In some cases, strided reads
|
||||||
|
using nc_get_vars are faster (e.g. strided reads over many dimensions
|
||||||
|
such as var[:,::2,::2,::2])), so a variable method use_nc_get_vars was added.
|
||||||
|
var.use_nc_get_vars(True) will tell the library to use nc_get_vars instead
|
||||||
|
of multiple calls to nc_get_vara, which was the default behaviour previous
|
||||||
|
to this change.
|
||||||
|
* fix utc offset time zone conversion in netcdftime - it was being done
|
||||||
|
exactly backwards (issue #685 - thanks to @pgamez and @mdecker).
|
||||||
|
* Fix error message for illegal ellipsis slicing, add test (issue #701).
|
||||||
|
* Improve timezone format parsing in netcdftime
|
||||||
|
* make sure numpy datatypes used to define CompoundTypes have
|
||||||
|
isalignedstruct flag set to True (issue #705), otherwise.
|
||||||
|
segfaults can occur. Fix required raising them minimum numpy requirement
|
||||||
|
from 1.7.0 to 1.9.0.
|
||||||
|
* ignore missing_value, _FillValue, valid_range, valid_min and valid_max
|
||||||
|
when creating masked arrays if attribute cannot be safely
|
||||||
|
cast to variable data type (and issue a warning). When setting
|
||||||
|
these attributes don't cast to variable dtype unless it can
|
||||||
|
be done safely and issue a warning. Issue #707.
|
||||||
|
- update to version 1.2.9:
|
||||||
|
* Fix for auto scaling and masking when _Unsigned attribute set (create
|
||||||
|
view as unsigned type after scaling and masking). Issue #671.
|
||||||
|
* Always mask values outside valid_min, valid_max (not just when
|
||||||
|
missing_value attribue present). Issue #672.
|
||||||
|
- remove check boundary condition
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Jun 11 06:11:32 UTC 2017 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Implement single-spec version
|
||||||
|
- Fix source URL.
|
||||||
|
- Update to version 1.2.8
|
||||||
|
* recognize _Unsigned attribute used by netcdf-java to designate unsigned
|
||||||
|
integer data stored with a signed integer type in netcdf-3 (issue #656).
|
||||||
|
* add Dataset init memory parameter to allow loading a file from memory
|
||||||
|
(pull request #652, issues #406 and #295).
|
||||||
|
* fix for negative times in num2date (issue #659).
|
||||||
|
* fix for failing tests in numpy 1.13 due to changes in numpy.ma (issue #662).
|
||||||
|
* Checking for _Encoding attribute for NC_STRING variables, otherwise use
|
||||||
|
'utf-8'. 'utf-8' is used everywhere else, 'default_encoding' global module
|
||||||
|
variable is no longer used. getncattr method now takes optional kwarg
|
||||||
|
'encoding' (default 'utf-8') so encoding of attributes can be specified
|
||||||
|
if desired. If _Encoding is specified for an NC_CHAR ('S1') variable,
|
||||||
|
the chartostring utility function is used to convert the array of
|
||||||
|
characters to an array of strings with one less dimension (the last
|
||||||
|
dimension is interpreted as the length of each string) when reading the
|
||||||
|
data. When writing the data, stringtochar is used to convert a numpy
|
||||||
|
array of fixed length strings to an array of characters with one more
|
||||||
|
dimension. chartostring and stringtochar now also have an 'encoding' kwarg.
|
||||||
|
Automatic conversion to/from character to string arrays can be turned off
|
||||||
|
via a new set_auto_chartostring Dataset and Variable method (default
|
||||||
|
is True). Addresses issue #654.
|
||||||
|
* Cython >= 0.19 now required, _netCDF4.c and _netcdftime.c removed from
|
||||||
|
repository.
|
||||||
|
- Update to version 1.2.7
|
||||||
|
* fix for issue #624 (error in conversion to masked array when variable slice
|
||||||
|
returns a scalar). This is a regression introduced in 1.2.5 associated
|
||||||
|
with support for vector missing_values. Test (tst_masked5.py) added for
|
||||||
|
vector missing_values.
|
||||||
|
* fix for python 3.6 compatibility (error retrieving character _FillValue attribute,
|
||||||
|
issue #626). Test with python 3.6 using travis CI.
|
||||||
|
|
||||||
|
- Update to version 1.2.6
|
||||||
|
* fix some test failures on big endian PPC64 that were due to
|
||||||
|
errors in byte-swapping logic. Also fixed bug in enum
|
||||||
|
code exposed on PPC64 (issue #608).
|
||||||
|
* remove support for python 2.6 (it probably still will work for a while
|
||||||
|
though).
|
||||||
|
* Sometimes checking that data being assigned to a variable has
|
||||||
|
an 'ndim' attribute is not sufficient, instead check to see that
|
||||||
|
the object supports the buffer interface (issue #613).
|
||||||
|
* make get_variables_by_attributes work in MFDataset (issue #610)
|
||||||
|
The hack is also applied for set_auto_maskandscale, set_auto_scale,
|
||||||
|
set_automask, so these don't have to be duplicated in MFDataset (pull
|
||||||
|
request #571).
|
||||||
|
- Update to version 1.2.5
|
||||||
|
* Add MFDataset.set_auto_maskandscale (plus set_auto_scale, set_auto_mask).
|
||||||
|
Fixes issue #570.
|
||||||
|
* Use valid_min/valid_max/valid_range attributes when defining mask
|
||||||
|
(issue #576). Values outside the valid range are considered to
|
||||||
|
be missing when defining the mask.
|
||||||
|
* Fix for issue #584 (add support for dates before -4712-1-1 in 360_day
|
||||||
|
and 365_day calendars to netcdftime.utime).
|
||||||
|
* Fix for issue #593: add support for datetime.timedelta operations
|
||||||
|
(adding and subtracting timedelta, subtracting two datetime
|
||||||
|
instances to compute time duration between them), implement
|
||||||
|
datetime.replace() and datetime.__str__(). datetime.__repr__()
|
||||||
|
includes the full state of an instance. Add datetime.calendar.
|
||||||
|
datetime comparison operators have full accuracy now.
|
||||||
|
* Fix for issue #585 by increasing the size of the buffer used to store the
|
||||||
|
filepath.
|
||||||
|
* Fix for issue #592: Add support for string array attributes. (When
|
||||||
|
reading, a vlen string array attribute is returned as a list of
|
||||||
|
strings. To write, use var.setncattr_string("name", ["two", "strings"]).)
|
||||||
|
* Fix for issue #596 - julian day calculations wrong for negative years,
|
||||||
|
caused incorrect rountrip num2date(date2num(date)) roundtrip for dates with year
|
||||||
|
< 0.
|
||||||
|
* Make sure negative years work in utime.num2date (issue #596).
|
||||||
|
* raise NotImplementedError when trying to pickle Dataset, Variable,
|
||||||
|
CompoundType, VLType, EnumType and MFDataset (issue #602).
|
||||||
|
* Fix for issue #527: initialize vldata[i].p in Variable._get(...).
|
||||||
|
- Update to version 1.2.4
|
||||||
|
* Fix for issue #554. It is now ensured that data is in native endian
|
||||||
|
byte order before passing to netcdf-c library. Data read from variable
|
||||||
|
with non-native byte order is also byte-swapped, so that dtype remains
|
||||||
|
consistent with netcdf variable. Behavior now consistent with h5py.
|
||||||
|
* raise warning for HDF5 1.10.x (issue #549), since backwards
|
||||||
|
incompatible files may be created.
|
||||||
|
* raise AttributeError instead of RuntimeError when attribute operation
|
||||||
|
fails. raise IOError instead of RuntimeError when nc_create or
|
||||||
|
nc_open fails (issue #546).
|
||||||
|
* Use NamedTemporaryFile instead of deprecated mktemp in tests
|
||||||
|
(pull request #543).
|
||||||
|
* add AppVeyor automated windows tests (pull request #540).
|
||||||
|
- Update to version 1.2.3.1
|
||||||
|
* fix bug in setup.py (pull request #539, introduced in issue #518).
|
||||||
|
- Update to version 1.2.3
|
||||||
|
* try to avoid writing NC_STRING attributes if possible, by
|
||||||
|
trying to convert unicode strings to ascii and write as NC_CHAR (issue
|
||||||
|
#529). This preserves compatibility with clients (like Matlab) that
|
||||||
|
can't deal with NC_STRING attributes. A 'setncattr_string' method
|
||||||
|
was added for Dataset and Variable to that users can force attributes
|
||||||
|
to be written as NC_STRING if necessary.
|
||||||
|
* fix failing tests with numpy 1.11 (issues #521 and #522).
|
||||||
|
* fix indentation bug in nc4tonc3 utility (issue #519).
|
||||||
|
* add the capability in setup.py to use pkg-config instead of
|
||||||
|
nc-config (pull request #518).
|
||||||
|
* make sure slices which return scalar masked arrays
|
||||||
|
are consistent with numpy.ma (issue #515).
|
||||||
|
* add test/tst_cdf5.py and test/tst_filepath.py (to test new
|
||||||
|
NETCDF3_64BIT_DATA format and filepath Dataset method).
|
||||||
|
* expose netcdftime.__version__ (issue #504).
|
||||||
|
* fix potential memory leak in Dataset.filepath in attempt to fix
|
||||||
|
mysterious segfaults on CentOS6 (issue #506). Segfaults
|
||||||
|
can apparently still occur on systems like CentOS6 with old versions of glibc.
|
||||||
|
- Update to version 1.2.2
|
||||||
|
* fix failing tests on python 2.6 (issue #497). Change minimum required
|
||||||
|
python from 2.5 to 2.6.
|
||||||
|
* Potential memory leaks fixed by freeing string pointers internally allocated
|
||||||
|
in netcdf-c using nc_free_string. Also use nc_free_vlens to free space allocated
|
||||||
|
for vlens inside netcdf-c (issue #495).
|
||||||
|
* invoke str on filename argument to Dataset constructor, so pathlib
|
||||||
|
instances can be used (issue #489).
|
||||||
|
* don't use hardwired NC_MAX_DIMS or NC_MAX_VARS internally to allocate space
|
||||||
|
for dimension or variable ids. Instead, find out the number of dims
|
||||||
|
and vars and use malloc. NC_MAX_NAME is still used to allocate space
|
||||||
|
for attribute and variable names, since there is no obvious way to
|
||||||
|
determine the length of these names.
|
||||||
|
* if trying to write a unicode attribute, check to see if it exists
|
||||||
|
first and is NC_CHAR, and if so, delete it and recreate it. Workaround for C
|
||||||
|
lib bug discovered in issue #485.
|
||||||
|
* support for NETCDF3_64BIT_DATA format supported in netcdf-c 4.4.0.
|
||||||
|
Similar to NETCDF3_64BIT (now NETCDF3_64BIT_OFFSET), but includes
|
||||||
|
64 bit dimensions and sizes, plus unsigned and 64 bit integer
|
||||||
|
data types.
|
||||||
|
* make sure chunksize does not exceed dimension size
|
||||||
|
(for non-unlimited dimensions) on variable creation (issue #480).
|
||||||
|
* add 'size' attribute to Dimension (same as len(d), where
|
||||||
|
d is a Dimension instance, issue #477).
|
||||||
|
* fix bug in nc3tonc4 with --unpackshort=1 (issue #474).
|
||||||
|
* dates do not have to be contiguous, i.e. can be before and after the
|
||||||
|
missing dates in Gregorian calendar (pull request #476).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Fri Oct 16 12:37:25 UTC 2015 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Update to version 1.2.1
|
||||||
|
* add the capability to slice variables with unsorted integer sequences,
|
||||||
|
or integer sequences with duplicates (issue #467). This was done
|
||||||
|
by converting boolean array slices to integer array slices internally,
|
||||||
|
instead of the other way around.
|
||||||
|
* raise TypeError if masked array assigned to a VLEN str variable slice
|
||||||
|
(issue #464).
|
||||||
|
* Ellipsis now can be used with scalar VLEN str variables (issue #458).
|
||||||
|
Slicing of scalar VLEN (non-str) variables now works.
|
||||||
|
* Allow non-positive reference years in non-real-world calendars
|
||||||
|
(issue #442).
|
||||||
|
- Update to version 1.2.0
|
||||||
|
* Fixes to setup.py for building on windows (issue #460).
|
||||||
|
* warnings now issued if file being read contains unsupported
|
||||||
|
variables or data types (they were previously being silently
|
||||||
|
skipped).
|
||||||
|
* added 'get_variables_by_attributes' method (issue #454).
|
||||||
|
* check for 'units' attribute in date2index (issue #453).
|
||||||
|
* added support for enum types (issue #452).
|
||||||
|
* added 'isopen' Dataset method (issue #450).
|
||||||
|
* raise ValueError if year 0 or negative year used in time units string.
|
||||||
|
The year 0 does not exist in the Julian and Gregorian
|
||||||
|
calendars (issue #442).
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Jul 14 16:30:08 UTC 2015 - toddrme2178@gmail.com
|
||||||
|
|
||||||
|
- Initial version
|
||||||
|
|
||||||
1
python-netCDF4.rpmlintrc
Normal file
1
python-netCDF4.rpmlintrc
Normal file
@ -0,0 +1 @@
|
|||||||
|
addFilter("zero-length .*site-packages/netCDF4/plugins/empty.txt")
|
||||||
116
python-netCDF4.spec
Normal file
116
python-netCDF4.spec
Normal file
@ -0,0 +1,116 @@
|
|||||||
|
#
|
||||||
|
# spec file for package python-netCDF4
|
||||||
|
#
|
||||||
|
# Copyright (c) 2024 SUSE LLC
|
||||||
|
#
|
||||||
|
# All modifications and additions to the file contributed by third parties
|
||||||
|
# remain the property of their copyright owners, unless otherwise agreed
|
||||||
|
# upon. The license for this file, and modifications and additions to the
|
||||||
|
# file, is the same license as for the pristine package itself (unless the
|
||||||
|
# license for the pristine package is not an Open Source License, in which
|
||||||
|
# case the license is the MIT License). An "Open Source License" is a
|
||||||
|
# license that conforms to the Open Source Definition (Version 1.9)
|
||||||
|
# published by the Open Source Initiative.
|
||||||
|
|
||||||
|
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
||||||
|
#
|
||||||
|
|
||||||
|
|
||||||
|
Name: python-netCDF4
|
||||||
|
Version: 1.6.5
|
||||||
|
Release: 0
|
||||||
|
Summary: Python interface to netCDF 3 and 4
|
||||||
|
License: HPND AND MIT
|
||||||
|
URL: https://github.com/Unidata/netcdf4-python
|
||||||
|
Source: https://files.pythonhosted.org/packages/source/n/netCDF4/netCDF4-%{version}.tar.gz
|
||||||
|
Source99: python-netCDF4.rpmlintrc
|
||||||
|
BuildRequires: %{python_module Cython >= 0.29 with %python-Cython < 3}
|
||||||
|
BuildRequires: %{python_module certifi}
|
||||||
|
BuildRequires: %{python_module cftime}
|
||||||
|
BuildRequires: %{python_module devel >= 3.7}
|
||||||
|
BuildRequires: %{python_module numpy-devel >= 1.10.0}
|
||||||
|
BuildRequires: %{python_module pip}
|
||||||
|
BuildRequires: %{python_module setuptools >= 61}
|
||||||
|
BuildRequires: %{python_module wheel}
|
||||||
|
BuildRequires: fdupes
|
||||||
|
BuildRequires: hdf5-devel >= 1.8.4
|
||||||
|
BuildRequires: libcurl-devel
|
||||||
|
BuildRequires: libjpeg-devel
|
||||||
|
BuildRequires: netcdf-devel >= 4.2
|
||||||
|
BuildRequires: python-rpm-macros
|
||||||
|
Requires: hdf5 >= 1.8.4
|
||||||
|
Requires: netcdf >= 4.2
|
||||||
|
Requires: python-certifi
|
||||||
|
Requires: python-cftime
|
||||||
|
Requires: python-numpy >= 1.10.0
|
||||||
|
Requires(post): update-alternatives
|
||||||
|
Requires(postun):update-alternatives
|
||||||
|
# SECTION tests
|
||||||
|
BuildRequires: %{python_module pytest}
|
||||||
|
BuildRequires: netcdf
|
||||||
|
# /SECTION
|
||||||
|
%python_subpackages
|
||||||
|
|
||||||
|
%description
|
||||||
|
netCDF version 4 has many features not found in earlier versions of
|
||||||
|
the library and is implemented on top of HDF5. This module can read
|
||||||
|
and write files in both the new netCDF 4 and the old netCDF 3
|
||||||
|
format, and can create files that are readable by HDF5 clients. The
|
||||||
|
API modelled after Scientific.IO.NetCDF, and should be familiar to
|
||||||
|
users of that module.
|
||||||
|
|
||||||
|
Most new features of netCDF 4 are implemented, such as multiple unlimited
|
||||||
|
dimensions, groups and zlib data compression. All the new numeric data types
|
||||||
|
(such as 64 bit and unsigned integer types) are implemented. Compound and
|
||||||
|
variable length (vlen) data types are supported, but the enum and opaque data
|
||||||
|
types are not. Mixtures of compound and vlen data types (compound types
|
||||||
|
containing vlens, and vlens containing compound types) are not supported.
|
||||||
|
|
||||||
|
%prep
|
||||||
|
%setup -q -n netCDF4-%{version}
|
||||||
|
|
||||||
|
%build
|
||||||
|
export CFLAGS="%{optflags} -fno-strict-aliasing"
|
||||||
|
%pyproject_wheel
|
||||||
|
|
||||||
|
%install
|
||||||
|
%pyproject_install
|
||||||
|
%python_clone -a %{buildroot}%{_bindir}/ncinfo
|
||||||
|
%python_clone -a %{buildroot}%{_bindir}/nc4tonc3
|
||||||
|
%python_clone -a %{buildroot}%{_bindir}/nc3tonc4
|
||||||
|
%python_expand %fdupes %{buildroot}%{$python_sitearch}
|
||||||
|
|
||||||
|
%check
|
||||||
|
pushd test
|
||||||
|
export NO_NET=1
|
||||||
|
|
||||||
|
# Broken test in s390x, gh#Unidata/netcdf4-python#1124
|
||||||
|
%ifarch s390x
|
||||||
|
rm tst_compoundvar.py
|
||||||
|
%endif
|
||||||
|
|
||||||
|
%{python_expand export PYTHONPATH=%{buildroot}%{$python_sitearch}
|
||||||
|
$python run_all.py
|
||||||
|
}
|
||||||
|
popd
|
||||||
|
|
||||||
|
%post
|
||||||
|
%python_install_alternative ncinfo
|
||||||
|
%python_install_alternative nc4tonc3
|
||||||
|
%python_install_alternative nc3tonc4
|
||||||
|
|
||||||
|
%postun
|
||||||
|
%python_uninstall_alternative ncinfo
|
||||||
|
%python_uninstall_alternative nc4tonc3
|
||||||
|
%python_uninstall_alternative nc3tonc4
|
||||||
|
|
||||||
|
%files %{python_files}
|
||||||
|
%doc Changelog README.md
|
||||||
|
%license LICENSE
|
||||||
|
%python_alternative %{_bindir}/nc3tonc4
|
||||||
|
%python_alternative %{_bindir}/nc4tonc3
|
||||||
|
%python_alternative %{_bindir}/ncinfo
|
||||||
|
%{python_sitearch}/netCDF4
|
||||||
|
%{python_sitearch}/netCDF4-%{version}.dist-info
|
||||||
|
|
||||||
|
%changelog
|
||||||
Loading…
Reference in New Issue
Block a user