Sync from SUSE:ALP:Source:Standard:1.0 python-numcodecs revision 755e4dda643d95f723d966ef7404d273
This commit is contained in:
commit
f5d904f396
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.gitattributes
vendored
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23
.gitattributes
vendored
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.jar filter=lfs diff=lfs merge=lfs -text
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*.lz filter=lfs diff=lfs merge=lfs -text
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*.lzma filter=lfs diff=lfs merge=lfs -text
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*.obscpio filter=lfs diff=lfs merge=lfs -text
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*.oxt filter=lfs diff=lfs merge=lfs -text
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*.pdf filter=lfs diff=lfs merge=lfs -text
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*.png filter=lfs diff=lfs merge=lfs -text
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*.rpm filter=lfs diff=lfs merge=lfs -text
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*.tbz filter=lfs diff=lfs merge=lfs -text
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.ttf filter=lfs diff=lfs merge=lfs -text
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*.txz filter=lfs diff=lfs merge=lfs -text
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*.whl filter=lfs diff=lfs merge=lfs -text
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*.xz filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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95
move-from-entrypoints.patch
Normal file
95
move-from-entrypoints.patch
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@ -0,0 +1,95 @@
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From af20af8210384371f91f30251fc78a35ffd0c072 Mon Sep 17 00:00:00 2001
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|
From: Steve Kowalik <steven@wedontsleep.org>
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Date: Wed, 9 Aug 2023 15:15:52 +1000
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|
Subject: [PATCH] Remove use of entrypoints
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|
|
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|
Since Python 3.8, the standard library has included functionality to
|
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|
query entry points directly using importlib.metadata. Since the API has
|
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|
changed for the better with Python 3.10, we need to support both ways of
|
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|
using it.
|
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|
---
|
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|
numcodecs/registry.py | 14 +++++++++-----
|
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|
numcodecs/tests/test_entrypoints.py | 2 --
|
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|
pyproject.toml | 7 ++++++-
|
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|
3 files changed, 15 insertions(+), 8 deletions(-)
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|
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|
diff --git a/numcodecs/registry.py b/numcodecs/registry.py
|
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|
index 532e9967..a4dff6d7 100644
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|
--- a/numcodecs/registry.py
|
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|
+++ b/numcodecs/registry.py
|
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|
@@ -1,7 +1,7 @@
|
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|
"""The registry module provides some simple convenience functions to enable
|
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|
applications to dynamically register and look-up codec classes."""
|
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|
+from importlib.metadata import entry_points
|
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|
import logging
|
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|
-from contextlib import suppress
|
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|
|
||||||
|
logger = logging.getLogger("numcodecs")
|
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|
codec_registry = {}
|
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|
@@ -9,13 +9,17 @@
|
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|
|
||||||
|
|
||||||
|
def run_entrypoints():
|
||||||
|
- import entrypoints
|
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|
entries.clear()
|
||||||
|
- entries.update(entrypoints.get_group_named("numcodecs.codecs"))
|
||||||
|
+ eps = entry_points()
|
||||||
|
+ if hasattr(eps, 'select'):
|
||||||
|
+ # If entry_points() has a select method, use that. Python 3.10+
|
||||||
|
+ entries.update(eps.select(group="numcodecs.codecs"))
|
||||||
|
+ else:
|
||||||
|
+ # Otherwise, fallback to using get
|
||||||
|
+ entries.update(eps.get("numcodecs.codecs", []))
|
||||||
|
|
||||||
|
|
||||||
|
-with suppress(ImportError):
|
||||||
|
- run_entrypoints()
|
||||||
|
+run_entrypoints()
|
||||||
|
|
||||||
|
|
||||||
|
def get_codec(config):
|
||||||
|
diff --git a/numcodecs/tests/test_entrypoints.py b/numcodecs/tests/test_entrypoints.py
|
||||||
|
index 81af635d..0d017f2d 100644
|
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|
--- a/numcodecs/tests/test_entrypoints.py
|
||||||
|
+++ b/numcodecs/tests/test_entrypoints.py
|
||||||
|
@@ -7,7 +7,6 @@
|
||||||
|
|
||||||
|
|
||||||
|
here = os.path.abspath(os.path.dirname(__file__))
|
||||||
|
-pytest.importorskip("entrypoints")
|
||||||
|
|
||||||
|
|
||||||
|
@pytest.fixture()
|
||||||
|
@@ -20,7 +19,6 @@ def set_path():
|
||||||
|
numcodecs.registry.codec_registry.pop("test")
|
||||||
|
|
||||||
|
|
||||||
|
-@pytest.mark.xfail(reason="FIXME: not working in wheels build")
|
||||||
|
def test_entrypoint_codec(set_path):
|
||||||
|
cls = numcodecs.registry.get_codec({"id": "test"})
|
||||||
|
assert cls.codec_id == "test"
|
||||||
|
diff --git a/pyproject.toml b/pyproject.toml
|
||||||
|
index a2b50e32..147f9b54 100644
|
||||||
|
--- a/pyproject.toml
|
||||||
|
+++ b/pyproject.toml
|
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|
@@ -15,7 +15,6 @@ in data storage and communication applications.
|
||||||
|
"""
|
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|
readme = "README.rst"
|
||||||
|
dependencies = [
|
||||||
|
- "entrypoints",
|
||||||
|
"numpy>=1.7",
|
||||||
|
]
|
||||||
|
requires-python = ">=3.8"
|
||||||
|
@@ -71,6 +70,12 @@ package-dir = {"" = "."}
|
||||||
|
packages = ["numcodecs", "numcodecs.tests"]
|
||||||
|
zip-safe = false
|
||||||
|
|
||||||
|
+[tool.setuptools.package-data]
|
||||||
|
+numcodecs = [
|
||||||
|
+ "tests/package_with_entrypoint/__init__.py",
|
||||||
|
+ "tests/package_with_entrypoint-0.1.dist-info/entry_points.txt"
|
||||||
|
+]
|
||||||
|
+
|
||||||
|
[tool.setuptools_scm]
|
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|
version_scheme = "guess-next-dev"
|
||||||
|
local_scheme = "dirty-tag"
|
||||||
BIN
numcodecs-0.11.0.tar.gz
(Stored with Git LFS)
Normal file
BIN
numcodecs-0.11.0.tar.gz
(Stored with Git LFS)
Normal file
Binary file not shown.
151
numcodecs-pr417-raggednumpy.patch
Normal file
151
numcodecs-pr417-raggednumpy.patch
Normal file
@ -0,0 +1,151 @@
|
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|
diff --git a/numcodecs/json.py b/numcodecs/json.py
|
||||||
|
index 670f223..b803a77 100644
|
||||||
|
--- a/numcodecs/json.py
|
||||||
|
+++ b/numcodecs/json.py
|
||||||
|
@@ -54,7 +54,10 @@ class JSON(Codec):
|
||||||
|
self._decoder = _json.JSONDecoder(**self._decoder_config)
|
||||||
|
|
||||||
|
def encode(self, buf):
|
||||||
|
- buf = np.asarray(buf)
|
||||||
|
+ try:
|
||||||
|
+ buf = np.asarray(buf)
|
||||||
|
+ except ValueError:
|
||||||
|
+ buf = np.asarray(buf, dtype=object)
|
||||||
|
items = buf.tolist()
|
||||||
|
items.extend((buf.dtype.str, buf.shape))
|
||||||
|
return self._encoder.encode(items).encode(self._text_encoding)
|
||||||
|
diff --git a/numcodecs/msgpacks.py b/numcodecs/msgpacks.py
|
||||||
|
index 026f583..6556498 100644
|
||||||
|
--- a/numcodecs/msgpacks.py
|
||||||
|
+++ b/numcodecs/msgpacks.py
|
||||||
|
@@ -52,7 +52,10 @@ class MsgPack(Codec):
|
||||||
|
self.raw = raw
|
||||||
|
|
||||||
|
def encode(self, buf):
|
||||||
|
- buf = np.asarray(buf)
|
||||||
|
+ try:
|
||||||
|
+ buf = np.asarray(buf)
|
||||||
|
+ except ValueError:
|
||||||
|
+ buf = np.asarray(buf, dtype=object)
|
||||||
|
items = buf.tolist()
|
||||||
|
items.extend((buf.dtype.str, buf.shape))
|
||||||
|
return msgpack.packb(items, use_bin_type=self.use_bin_type,
|
||||||
|
diff --git a/numcodecs/tests/test_json.py b/numcodecs/tests/test_json.py
|
||||||
|
index 7e8fcd6..8dac2b4 100644
|
||||||
|
--- a/numcodecs/tests/test_json.py
|
||||||
|
+++ b/numcodecs/tests/test_json.py
|
||||||
|
@@ -2,7 +2,7 @@ import itertools
|
||||||
|
|
||||||
|
|
||||||
|
import numpy as np
|
||||||
|
-
|
||||||
|
+import pytest
|
||||||
|
|
||||||
|
from numcodecs.json import JSON
|
||||||
|
from numcodecs.tests.common import (check_config, check_repr, check_encode_decode_array,
|
||||||
|
@@ -53,21 +53,23 @@ def test_backwards_compatibility():
|
||||||
|
check_backwards_compatibility(JSON.codec_id, arrays, codecs)
|
||||||
|
|
||||||
|
|
||||||
|
-def test_non_numpy_inputs():
|
||||||
|
+@pytest.mark.parametrize(
|
||||||
|
+ "input_data, dtype",
|
||||||
|
+ [
|
||||||
|
+ ([0, 1], None),
|
||||||
|
+ ([[0, 1], [2, 3]], None),
|
||||||
|
+ ([[0], [1], [2, 3]], object),
|
||||||
|
+ ([[[0, 0]], [[1, 1]], [[2, 3]]], None),
|
||||||
|
+ (["1"], None),
|
||||||
|
+ (["11", "11"], None),
|
||||||
|
+ (["11", "1", "1"], None),
|
||||||
|
+ ([{}], None),
|
||||||
|
+ ([{"key": "value"}, ["list", "of", "strings"]], object),
|
||||||
|
+ ]
|
||||||
|
+)
|
||||||
|
+def test_non_numpy_inputs(input_data, dtype):
|
||||||
|
# numpy will infer a range of different shapes and dtypes for these inputs.
|
||||||
|
# Make sure that round-tripping through encode preserves this.
|
||||||
|
- data = [
|
||||||
|
- [0, 1],
|
||||||
|
- [[0, 1], [2, 3]],
|
||||||
|
- [[0], [1], [2, 3]],
|
||||||
|
- [[[0, 0]], [[1, 1]], [[2, 3]]],
|
||||||
|
- ["1"],
|
||||||
|
- ["11", "11"],
|
||||||
|
- ["11", "1", "1"],
|
||||||
|
- [{}],
|
||||||
|
- [{"key": "value"}, ["list", "of", "strings"]],
|
||||||
|
- ]
|
||||||
|
- for input_data in data:
|
||||||
|
- for codec in codecs:
|
||||||
|
- output_data = codec.decode(codec.encode(input_data))
|
||||||
|
- assert np.array_equal(np.array(input_data), output_data)
|
||||||
|
+ for codec in codecs:
|
||||||
|
+ output_data = codec.decode(codec.encode(input_data))
|
||||||
|
+ assert np.array_equal(np.array(input_data, dtype=dtype), output_data)
|
||||||
|
diff --git a/numcodecs/tests/test_msgpacks.py b/numcodecs/tests/test_msgpacks.py
|
||||||
|
index 6aeadcf..d76aa12 100644
|
||||||
|
--- a/numcodecs/tests/test_msgpacks.py
|
||||||
|
+++ b/numcodecs/tests/test_msgpacks.py
|
||||||
|
@@ -2,6 +2,7 @@ import unittest
|
||||||
|
|
||||||
|
|
||||||
|
import numpy as np
|
||||||
|
+import pytest
|
||||||
|
|
||||||
|
|
||||||
|
try:
|
||||||
|
@@ -52,30 +53,32 @@ def test_backwards_compatibility():
|
||||||
|
check_backwards_compatibility(codec.codec_id, arrays, [codec])
|
||||||
|
|
||||||
|
|
||||||
|
-def test_non_numpy_inputs():
|
||||||
|
+@pytest.mark.parametrize(
|
||||||
|
+ "input_data, dtype",
|
||||||
|
+ [
|
||||||
|
+ ([0, 1], None),
|
||||||
|
+ ([[0, 1], [2, 3]], None),
|
||||||
|
+ ([[0], [1], [2, 3]], object),
|
||||||
|
+ ([[[0, 0]], [[1, 1]], [[2, 3]]], None),
|
||||||
|
+ (["1"], None),
|
||||||
|
+ (["11", "11"], None),
|
||||||
|
+ (["11", "1", "1"], None),
|
||||||
|
+ ([{}], None),
|
||||||
|
+ ([{"key": "value"}, ["list", "of", "strings"]], object),
|
||||||
|
+ ([b"1"], None),
|
||||||
|
+ ([b"11", b"11"], None),
|
||||||
|
+ ([b"11", b"1", b"1"], None),
|
||||||
|
+ ([{b"key": b"value"}, [b"list", b"of", b"strings"]], object),
|
||||||
|
+ ]
|
||||||
|
+)
|
||||||
|
+def test_non_numpy_inputs(input_data, dtype):
|
||||||
|
codec = MsgPack()
|
||||||
|
# numpy will infer a range of different shapes and dtypes for these inputs.
|
||||||
|
# Make sure that round-tripping through encode preserves this.
|
||||||
|
- data = [
|
||||||
|
- [0, 1],
|
||||||
|
- [[0, 1], [2, 3]],
|
||||||
|
- [[0], [1], [2, 3]],
|
||||||
|
- [[[0, 0]], [[1, 1]], [[2, 3]]],
|
||||||
|
- ["1"],
|
||||||
|
- ["11", "11"],
|
||||||
|
- ["11", "1", "1"],
|
||||||
|
- [{}],
|
||||||
|
- [{"key": "value"}, ["list", "of", "strings"]],
|
||||||
|
- [b"1"],
|
||||||
|
- [b"11", b"11"],
|
||||||
|
- [b"11", b"1", b"1"],
|
||||||
|
- [{b"key": b"value"}, [b"list", b"of", b"strings"]],
|
||||||
|
- ]
|
||||||
|
- for input_data in data:
|
||||||
|
- actual = codec.decode(codec.encode(input_data))
|
||||||
|
- expect = np.array(input_data)
|
||||||
|
- assert expect.shape == actual.shape
|
||||||
|
- assert np.array_equal(expect, actual)
|
||||||
|
+ actual = codec.decode(codec.encode(input_data))
|
||||||
|
+ expect = np.array(input_data, dtype=dtype)
|
||||||
|
+ assert expect.shape == actual.shape
|
||||||
|
+ assert np.array_equal(expect, actual)
|
||||||
|
|
||||||
|
|
||||||
|
def test_encode_decode_shape_dtype_preserved():
|
||||||
131
python-numcodecs.changes
Normal file
131
python-numcodecs.changes
Normal file
@ -0,0 +1,131 @@
|
|||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Aug 28 02:21:23 UTC 2023 - Steve Kowalik <steven.kowalik@suse.com>
|
||||||
|
|
||||||
|
- Add patch move-from-entrypoints.patch:
|
||||||
|
* Drop requirements on entrypoints, use importlib.metadata.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Jan 12 16:00:40 UTC 2023 - Ben Greiner <code@bnavigator.de>
|
||||||
|
|
||||||
|
- Update to 0.11.0
|
||||||
|
* Speed up isinstance checks of
|
||||||
|
numcodecs.ndarray_like.NDArrayLike,
|
||||||
|
numcodecs.ndarray_like.DType and
|
||||||
|
numcodecs.ndarray_like.FlagsObj. By Andreas Poehlmann, #379.
|
||||||
|
* Remove unnecessary None argument to .get(), it is the default
|
||||||
|
value. By Dimitri Papadopoulos Orfanos, #395.
|
||||||
|
* Apply refurb suggestions. By Dimitri Papadopoulos Orfanos,
|
||||||
|
#372.
|
||||||
|
* Migrate codespell configuration to pyproject.toml and get rid
|
||||||
|
of setup.cfg. By Dimitri Papadopoulos Orfanos #374.
|
||||||
|
* Unvendor cpuinfo. By Dimitri Papadopoulos Orfanos #373.
|
||||||
|
* Drop headers. By John Kirkham, #375.
|
||||||
|
* Remove Python 2 code. By Dimitri Papadopoulos Orfanos #368,
|
||||||
|
#387.
|
||||||
|
* Support Python 3.11. By Dimitri Papadopoulos Orfanos, #369.
|
||||||
|
* Drop Python 3.7. By John Kirkham,, #405 #406.
|
||||||
|
* Test with zfpy 1.0.0. By John Kirkham, #385.
|
||||||
|
* Remove vendored C files and re-generate them on the fly using
|
||||||
|
Cython. Add a pyproject.toml file to define Cython as a build
|
||||||
|
dependency. By Dimitri Papadopoulos Orfanos, #369.
|
||||||
|
* Add tests for all registry classes. By Josh Moore, #349.
|
||||||
|
* Finish pyproject.toml migration. By John Kirkham #382.
|
||||||
|
- Add numcodecs-pr417-raggednumpy.patch
|
||||||
|
* gh#zarr-developers/numcodecs#417
|
||||||
|
- Refresh unbundle-libs.patch for system blosc supporting snappy
|
||||||
|
* gh#zarr-developers/numcodecs#264
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Sep 25 20:23:44 UTC 2022 - Arun Persaud <arun@gmx.de>
|
||||||
|
|
||||||
|
- specfile:
|
||||||
|
* update copyright year
|
||||||
|
* require python >= 3.7
|
||||||
|
|
||||||
|
- update to version 0.10.2:
|
||||||
|
* Fix
|
||||||
|
+ Add BitRound (0.10.0) to registry. By Josh Moore, #342.
|
||||||
|
|
||||||
|
- changes from version 0.10.1:
|
||||||
|
* Maintenance
|
||||||
|
+ Add entrypoints to setup.py. By Josh Moore, #332.
|
||||||
|
+ Fix spelling. By Dimitri Papadopoulos Orfanos, #336.
|
||||||
|
+ Drop Python 3.6 from tests By Dimitri Papadopoulos Orfanos,
|
||||||
|
#338, #339.
|
||||||
|
+ Remove trailing spaces and empty lines. By Dimitri Papadopoulos
|
||||||
|
Orfanos, #341.
|
||||||
|
+ Add LGTM.com configuration file By Dimitri Papadopoulos Orfanos,
|
||||||
|
#337.
|
||||||
|
|
||||||
|
- changes from version 0.10.0:
|
||||||
|
* Enhancements
|
||||||
|
+ Add support of alternative array classes (other than NumPy
|
||||||
|
arrays) By Mads R. B. Kristensen, #305.
|
||||||
|
+ Add ability to find codecs via entrypoint numcodecs.codecs. By
|
||||||
|
Martin Durant, #290.
|
||||||
|
+ Add bitround codec By Ryan Abernathy and Martin Durant, #298.
|
||||||
|
+ Introduce a flat option to ensure_contiguous_ndarray to switch
|
||||||
|
off flatten for ZFPY codec By Haiying Xu, #307.
|
||||||
|
* Bug fixes
|
||||||
|
+ Fix a flatten array error for ZFPY, ZFPY codec is supported on
|
||||||
|
Python 3.9 and 3.10 on Linux and MacOS, the docs about ZFPY is
|
||||||
|
also available. By Haiying Xu, John Kirkham, Ryan Abernathey
|
||||||
|
#303.
|
||||||
|
+ Codex: make encode and decode @abstractmethods By Mads
|
||||||
|
R. B. Kristensen, #306.
|
||||||
|
+ Fix expected result test for Shuffle. By Elliott Sales de
|
||||||
|
Andrade, #282.
|
||||||
|
* Maintenance
|
||||||
|
+ Multiple code linting fixes. By Dimitri Papadopoulos Orfanos,
|
||||||
|
#295, #294, #293, and #292.
|
||||||
|
+ Drop Python 3.6 By Josh Moore, #318.
|
||||||
|
+ Fix macOS Python 3.10 By John Kirkham, #311.
|
||||||
|
+ chore: bump cibuildwheel version, use action By Henry Schreiner,
|
||||||
|
#309.
|
||||||
|
+ Specify language as ‘en’ instead of None. By John Kirkham, #329.
|
||||||
|
+ Move master to main. By John Kirkham, #322.
|
||||||
|
+ Drop fastparquet benchmark. By John Kirkham, #321.
|
||||||
|
+ Trim wheel builds. By John Kirkham, #320.
|
||||||
|
|
||||||
|
- changes from version 0.9.1:
|
||||||
|
* Fix inaccurate docstrings for Blosc. By James Webber, #287.
|
||||||
|
|
||||||
|
- changes from version 0.9.0:
|
||||||
|
* c-blosc upgrade 1.18.1 -> 1.21.0. Warning: this temporarily
|
||||||
|
removes support for snappy compression! By kindjacket, #283.
|
||||||
|
* Fix an ImportError with Blosc on Android. By Daniel Jewell, #284.
|
||||||
|
|
||||||
|
- changes from version 0.8.1:
|
||||||
|
* Fix an ImportError with Blosc on Android. By Daniel Jewell, #284.
|
||||||
|
|
||||||
|
- changes from version 0.8.0:
|
||||||
|
* The numcodecs.zfpy.ZFPY codec is now supported on Python 3.8 if
|
||||||
|
zfpy==0.5.5 is installed. By haiying xu, #229.
|
||||||
|
* Add support for byte Shuffle filter By Paul Branson and Martin
|
||||||
|
Durant #273.
|
||||||
|
* Update Windows + Mac CI to run all tests. By Jackson Maxfield
|
||||||
|
Brown, #276. Help from Oleg Höfling, #273.
|
||||||
|
* Update cpuinfo to 8.0.0. By Florian Jetter, #280.
|
||||||
|
* Drop out-of-date manual release docs. By John Kirkham, #272.
|
||||||
|
* Add support for Python 3.9 and Update GitHub Actions.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Apr 25 11:13:12 UTC 2022 - Bernhard Wiedemann <bwiedemann@suse.com>
|
||||||
|
|
||||||
|
- Disable AVX2 to make package build reproducible (boo#1198818)
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Sat Apr 17 14:41:47 UTC 2021 - Ben Greiner <code@bnavigator.de>
|
||||||
|
|
||||||
|
- Update to v0.7.3
|
||||||
|
* Add support for Python 3.9
|
||||||
|
- Disable python36 build (NumPy not available, NEP 29)
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Dec 28 12:24:07 UTC 2020 - Benjamin Greiner <code@bnavigator.de>
|
||||||
|
|
||||||
|
- initial specfile for v0.7.2
|
||||||
|
- use and link against system provided blosc, zstd, lz4
|
||||||
|
* unbundle-libs.patch
|
||||||
|
* gh#zarr-developers/numcodecs#264
|
||||||
|
- required by zarr, which is required by dask
|
||||||
86
python-numcodecs.spec
Normal file
86
python-numcodecs.spec
Normal file
@ -0,0 +1,86 @@
|
|||||||
|
#
|
||||||
|
# spec file for package python-numcodecs
|
||||||
|
#
|
||||||
|
# Copyright (c) 2023 SUSE LLC
|
||||||
|
#
|
||||||
|
# All modifications and additions to the file contributed by third parties
|
||||||
|
# remain the property of their copyright owners, unless otherwise agreed
|
||||||
|
# upon. The license for this file, and modifications and additions to the
|
||||||
|
# file, is the same license as for the pristine package itself (unless the
|
||||||
|
# license for the pristine package is not an Open Source License, in which
|
||||||
|
# case the license is the MIT License). An "Open Source License" is a
|
||||||
|
# license that conforms to the Open Source Definition (Version 1.9)
|
||||||
|
# published by the Open Source Initiative.
|
||||||
|
|
||||||
|
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
||||||
|
#
|
||||||
|
|
||||||
|
|
||||||
|
Name: python-numcodecs
|
||||||
|
Version: 0.11.0
|
||||||
|
Release: 0
|
||||||
|
Summary: Buffer compression and transformation codecs
|
||||||
|
License: MIT
|
||||||
|
URL: https://github.com/zarr-developers/numcodecs
|
||||||
|
Source: https://files.pythonhosted.org/packages/source/n/numcodecs/numcodecs-%{version}.tar.gz
|
||||||
|
# PATCH-FEATURE-UPSTREAM unbundle-libs.patch -- unbundle system libs gh#zarr-developers/numcodecs#264
|
||||||
|
Patch0: unbundle-libs.patch
|
||||||
|
# PATCH-FIX-UPSTREAM numcodecs-pr417-raggednumpy.patch gh#zarr-developers/numcodecs#417
|
||||||
|
Patch1: numcodecs-pr417-raggednumpy.patch
|
||||||
|
# PATCH-FIX-UPSTREAM gh#zarr-developers/numcodecs#442
|
||||||
|
Patch2: move-from-entrypoints.patch
|
||||||
|
BuildRequires: %{python_module Cython}
|
||||||
|
BuildRequires: %{python_module base >= 3.8}
|
||||||
|
BuildRequires: %{python_module pip}
|
||||||
|
BuildRequires: %{python_module py-cpuinfo}
|
||||||
|
BuildRequires: %{python_module setuptools > 64}
|
||||||
|
BuildRequires: %{python_module setuptools_scm > 6.2}
|
||||||
|
BuildRequires: %{python_module wheel}
|
||||||
|
BuildRequires: blosc-devel
|
||||||
|
BuildRequires: cmake
|
||||||
|
BuildRequires: fdupes
|
||||||
|
BuildRequires: gcc-c++
|
||||||
|
BuildRequires: pkgconfig
|
||||||
|
BuildRequires: python-rpm-macros
|
||||||
|
BuildRequires: pkgconfig(liblz4)
|
||||||
|
BuildRequires: pkgconfig(libzstd)
|
||||||
|
BuildRequires: pkgconfig(zlib)
|
||||||
|
Requires: python-numpy >= 1.7
|
||||||
|
Suggests: python-msgpack
|
||||||
|
Suggests: python-zfpy >= 1
|
||||||
|
# SECTION test requirements
|
||||||
|
BuildRequires: %{python_module numpy >= 1.7}
|
||||||
|
BuildRequires: %{python_module msgpack}
|
||||||
|
BuildRequires: %{python_module pytest}
|
||||||
|
# /SECTION
|
||||||
|
%python_subpackages
|
||||||
|
|
||||||
|
%description
|
||||||
|
A Python package providing buffer compression and transformation codecs for use
|
||||||
|
in data storage and communication applications.
|
||||||
|
|
||||||
|
%prep
|
||||||
|
%autosetup -p1 -n numcodecs-%{version}
|
||||||
|
# use system libraries instead of bundled ones
|
||||||
|
rm -r c-blosc
|
||||||
|
sed -i 's/--cov=numcodecs --cov-report xml//' pyproject.toml
|
||||||
|
|
||||||
|
%build
|
||||||
|
export CFLAGS="%{optflags}"
|
||||||
|
export DISABLE_NUMCODECS_AVX2=1
|
||||||
|
%pyproject_wheel
|
||||||
|
|
||||||
|
%install
|
||||||
|
%pyproject_install
|
||||||
|
%python_expand %fdupes %{buildroot}%{$python_sitearch}
|
||||||
|
|
||||||
|
%check
|
||||||
|
%pytest_arch --pyargs numcodecs -rsfE
|
||||||
|
|
||||||
|
%files %{python_files}
|
||||||
|
%doc README.rst
|
||||||
|
%license LICENSE.txt
|
||||||
|
%{python_sitearch}/numcodecs
|
||||||
|
%{python_sitearch}/numcodecs-%{version}*-info
|
||||||
|
|
||||||
|
%changelog
|
||||||
48
unbundle-libs.patch
Normal file
48
unbundle-libs.patch
Normal file
@ -0,0 +1,48 @@
|
|||||||
|
Index: numcodecs-0.11.0/setup.py
|
||||||
|
===================================================================
|
||||||
|
--- numcodecs-0.11.0.orig/setup.py
|
||||||
|
+++ numcodecs-0.11.0/setup.py
|
||||||
|
@@ -104,6 +104,7 @@ def blosc_extension():
|
||||||
|
Extension('numcodecs.blosc',
|
||||||
|
sources=sources + blosc_sources,
|
||||||
|
include_dirs=include_dirs,
|
||||||
|
+ libraries=[] if blosc_sources else ['blosc'],
|
||||||
|
define_macros=define_macros,
|
||||||
|
extra_compile_args=extra_compile_args,
|
||||||
|
),
|
||||||
|
@@ -138,6 +139,7 @@ def zstd_extension():
|
||||||
|
Extension('numcodecs.zstd',
|
||||||
|
sources=sources + zstd_sources,
|
||||||
|
include_dirs=include_dirs,
|
||||||
|
+ libraries=[] if zstd_sources else ['zstd'],
|
||||||
|
define_macros=define_macros,
|
||||||
|
extra_compile_args=extra_compile_args,
|
||||||
|
),
|
||||||
|
@@ -165,6 +167,7 @@ def lz4_extension():
|
||||||
|
Extension('numcodecs.lz4',
|
||||||
|
sources=sources + lz4_sources,
|
||||||
|
include_dirs=include_dirs,
|
||||||
|
+ libraries=[] if lz4_sources else ['lz4'],
|
||||||
|
define_macros=define_macros,
|
||||||
|
extra_compile_args=extra_compile_args,
|
||||||
|
),
|
||||||
|
Index: numcodecs-0.11.0/numcodecs/tests/test_blosc.py
|
||||||
|
===================================================================
|
||||||
|
--- numcodecs-0.11.0.orig/numcodecs/tests/test_blosc.py
|
||||||
|
+++ numcodecs-0.11.0/numcodecs/tests/test_blosc.py
|
||||||
|
@@ -155,10 +155,11 @@ def test_compress_complib(use_threads):
|
||||||
|
}
|
||||||
|
blosc.use_threads = use_threads
|
||||||
|
for cname in blosc.list_compressors():
|
||||||
|
- enc = blosc.compress(arr, cname.encode(), 1, Blosc.NOSHUFFLE)
|
||||||
|
- complib = blosc.cbuffer_complib(enc)
|
||||||
|
- expected_complib = expected_complibs[cname]
|
||||||
|
- assert complib == expected_complib
|
||||||
|
+ if cname in expected_complibs:
|
||||||
|
+ enc = blosc.compress(arr, cname.encode(), 1, Blosc.NOSHUFFLE)
|
||||||
|
+ complib = blosc.cbuffer_complib(enc)
|
||||||
|
+ expected_complib = expected_complibs[cname]
|
||||||
|
+ assert complib == expected_complib
|
||||||
|
with pytest.raises(ValueError):
|
||||||
|
# capitalized cname
|
||||||
|
blosc.compress(arr, b'LZ4', 1)
|
||||||
Loading…
Reference in New Issue
Block a user