435 lines
13 KiB
RPMSpec
435 lines
13 KiB
RPMSpec
#
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# spec file
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#
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# Copyright (c) 2023 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%global flavor @BUILD_FLAVOR@%{nil}
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%define ver 1.25.2
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%define _ver 1_25_2
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%define pname python-numpy
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%define plainpython python
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%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
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%if "%{flavor}" == ""
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%bcond_with hpc
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%bcond_with openblas
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%endif
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%if "%{flavor}" == "gnu-hpc"
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%bcond_without hpc
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%endif
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%if "%{flavor}" == "gnu7-hpc"
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%define c_f_ver 7
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%bcond_without hpc
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%endif
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%if %{with hpc}
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%bcond_without openblas
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%endif
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%if 0%{?sle_version} == 120300
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%{?with_openblas:ExclusiveArch: do_not_build}
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%endif
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%ifarch s390 s390x
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%{?with_openblas:ExclusiveArch: do_not_build}
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%endif
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%{?with_hpc:%{hpc_requires}}
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#
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%if 0%{?suse_version} > 1500
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%bcond_without libalternatives
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%bcond_without cblas
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%else
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%bcond_with libalternatives
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%bcond_with cblas
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%endif
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#
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%bcond_with ringdisabled
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#
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%if %{without hpc}
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%define package_name %{pname}
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%define p_python_sitearch %{python_sitearch}
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%define p_prefix %{_prefix}
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%define p_bindir %{_bindir}
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%else
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%{!?compiler_family:%global compiler_family gnu}
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%{hpc_init -c %{compiler_family} %{?c_f_ver:-v %{c_f_ver}} %{?mpi_ver:-V %{mpi_ver}}}
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%define package_name %{hpc_package_name %{_ver}}
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%define p_python_sitearch %{hpc_python_sitearch}
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%define p_prefix %{hpc_prefix}
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%define p_bindir %{hpc_bindir}
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# Magic for OBS Staging. Only build the flavors required by
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# other packages in the ring.
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%if %{with ringdisabled}
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ExclusiveArch: do_not_build
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%endif
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%endif
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%{?sle15_python_module_pythons}
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Name: %{package_name}
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# set %%ver and %%_ver instead above
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Version: %{ver}
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Release: 0
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Summary: NumPy array processing for numbers, strings, records and objects
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License: BSD-3-Clause
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URL: http://www.numpy.org/
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Source: https://files.pythonhosted.org/packages/source/n/numpy/numpy-%{version}.tar.gz
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Source99: python-numpy-rpmlintrc
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# PATCH-FIX-OPENSUSE numpy-buildfix.patch -- openSUSE-specific build fixes
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Patch0: numpy-buildfix.patch
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# PATCH-FIX-OPENSUSE numpy-1.9.0-remove-__declspec.patch -- fix for spurious compiler warnings that cause build failure
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Patch1: numpy-1.9.0-remove-__declspec.patch
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# PATCH-FIX-OPENSUSE Ignore DeprecationWarnings when importing pkg_resources
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Patch2: ignore-pkg_resources-deprecation.patch
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BuildRequires: %{python_module Cython >= 0.29.30 with %python-Cython < 3}
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BuildRequires: %{python_module base >= 3.8}
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BuildRequires: %{python_module devel}
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BuildRequires: %{python_module pip}
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BuildRequires: %{python_module setuptools >= 60.0.0}
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BuildRequires: %{python_module wheel}
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BuildRequires: gcc-c++
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BuildRequires: python-rpm-macros >= 20210929
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BuildConflicts: gcc11 < 11.2
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%if 0%{?suse_version}
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BuildRequires: fdupes
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%endif
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# SECTION test requirements
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BuildRequires: %{python_module pytest >= 7.4.0}
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BuildRequires: %{python_module hypothesis >= 6.75.0}
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BuildRequires: %{python_module pytest-xdist}
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BuildRequires: %{python_module testsuite}
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BuildRequires: %{python_module typing-extensions >= 4.2.0}
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# /SECTION
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%if %{without hpc}
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# Last version which packaged %%{_bindir}/f2py without update-alternatives
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Conflicts: %{plainpython}-numpy <= 1.12.0
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%if 0%{?suse_version}
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BuildRequires: gcc-fortran
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%else
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BuildRequires: gcc-gfortran
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%endif
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%if %{with openblas}
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BuildRequires: openblas-devel > 0.3.20
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%else
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BuildRequires: blas-devel
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BuildRequires: lapack-devel
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%if %{with cblas}
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# openblas has significantly better performance for some operations
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BuildRequires: cblas-devel
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Recommends: libopenblas_pthreads0
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%endif
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%endif
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%if %{with libalternatives}
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BuildRequires: alts
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Requires: alts
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%else
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Requires(post): update-alternatives
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Requires(postun):update-alternatives
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%endif
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%else
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BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
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BuildRequires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
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%ifnarch %ix86 %arm
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BuildRequires: lua-lmod
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%endif
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BuildRequires: suse-hpc
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Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc
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%endif
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%python_subpackages
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%description
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NumPy is a general-purpose array-processing package designed to
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efficiently manipulate large multi-dimensional arrays of arbitrary
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records without sacrificing too much speed for small multi-dimensional
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arrays. NumPy is built on the Numeric code base and adds features
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introduced by numarray as well as an extended C-API and the ability to
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create arrays of arbitrary type which also makes NumPy suitable for
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interfacing with general-purpose data-base applications.
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There are also basic facilities for discrete fourier transform,
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basic linear algebra and random number generation.
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%{?with_hpc:%{hpc_python_master_package -L -a }}
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%package devel
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Summary: Development files for numpy applications
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Requires: %{name} = %{version}
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Requires: python-devel
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Requires: %plainpython(abi) = %{python_version}
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%if %{without hpc}
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%if %{with openblas}
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Requires: openblas-devel
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%else
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Requires: blas-devel
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%if %{with cblas}
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Requires: cblas-devel
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%endif
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Requires: lapack-devel
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%endif
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%else
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Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
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%{hpc_requires_devel}
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%endif
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%description devel
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This package contains files for developing applications using numpy.
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%{?with_hpc:%{hpc_python_master_package devel -a }}
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%prep
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%autosetup -p1 -n numpy-%{version}
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# Fix non-executable scripts
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sed -i '1s/^#!.*$//' numpy/{compat/setup,random/_examples/cython/setup,distutils/{conv_template,cpuinfo,exec_command,from_template,setup,system_info},f2py/{__init__,auxfuncs,capi_maps,cb_rules,cfuncs,common_rules,crackfortran,diagnose,f2py2e,f90mod_rules,func2subr,rules,setup,use_rules},matrixlib/setup,setup,testing/{print_coercion_tables,setup}}.py
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sed -i '1s/^#!.*$//' numpy/random/_examples/cython/*.pyx
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# force cythonization
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rm -f PKG-INFO
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%build
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%define _lto_cflags %{nil}
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%if %{with hpc}
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%hpc_setup
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module load openblas
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export CFLAGS="$(pkg-config --cflags openblas) %{optflags} -fno-strict-aliasing" LIBS="$(pkg-config --libs openblas)"
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cat > site.cfg <<EOF
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[openblas]
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libraries = openblas
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library_dirs = $OPENBLAS_LIB
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include_dirs = $OPENBLAS_INC
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EOF
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%else
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export CFLAGS="%{optflags} -fno-strict-aliasing"
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%endif
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%pyproject_wheel
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%install
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%{?with_hpc:%hpc_setup}
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%{?with_hpc:module load openblas}
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%pyproject_install --prefix %{p_prefix} --root %{buildroot}
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%if !%{with hpc}
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%python_clone -a %{buildroot}%{_bindir}/f2py
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%python_expand rm %{buildroot}%{$python_sitearch}/numpy/core/include/numpy/.doxyfile
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%else
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rm %{buildroot}%{p_python_sitearch}/numpy/core/include/numpy/.doxyfile
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%endif
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%if 0%{?suse_version}
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%fdupes %{buildroot}%{p_prefix}
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%endif
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%if %{with hpc}
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%define hpc_module_pname ${python_flavor}-numpy
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%{python_expand # Don't package testsuite
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python_flavor=`cat _current_flavor`
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sitesearch_path=`$python -c "import sysconfig as s; print(s.get_paths(vars={'platbase':'%{hpc_prefix}','base':'%{hpc_prefix}'}).get('platlib'))"`
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rm -rf %{buildroot}${sitesearch_path}/numpy/{,core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests
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%hpc_write_modules_files
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#%%Module1.0#####################################################################
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proc ModulesHelp { } {
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puts stderr " "
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puts stderr "This module loads the %{pname} library built with the %{compiler_family} compiler"
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puts stderr "toolchain."
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puts stderr "\nVersion %{version}\n"
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}
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module-whatis "Name: %{pname} built with %{compiler_family} compiler"
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module-whatis "Version: %{version}"
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module-whatis "Category: python module"
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module-whatis "Description: %{SUMMARY:0}"
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module-whatis "URL %{url}"
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set version %{version}
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if [ expr [ module-info mode load ] || [module-info mode display ] ] {
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if { ![is-loaded intel] && ![is-loaded openblas] } {
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module load openblas
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}
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}
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prepend-path PATH %{hpc_bindir}
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prepend-path PYTHONPATH ${sitesearch_path}
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setenv %{hpc_upcase_trans_hyph %{pname}}_DIR %{hpc_prefix}
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setenv %{hpc_upcase_trans_hyph %{pname}}_BIN %{hpc_bindir}
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family "NumPy"
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EOF
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}
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%endif
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%check
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# https://numpy.org/doc/stable/dev/development_environment.html#running-tests
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%if %{without hpc}
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export PATH="%{buildroot}%{_bindir}:$PATH"
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mkdir -p testing
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cp pytest.ini testing/
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pushd testing
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# flaky tests
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test_failok+=" or test_structured_object_indexing"
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test_failok+=" or test_structured_object_item_setting"
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# flaky due to memory consumption
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test_failok+=" or test_big_arrays"
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# gh#numpy/numpy#22825
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test_failok+=" or TestPrintOptions"
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# gh#numpy/numpy#22835
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test_failok+=" or test_keepdims_out"
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# boo#1148173 gh#numpy/numpy#14438
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%ifarch ppc64 ppc64le
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test_failok+=" or test_generalized_sq"
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# situation with IBM and double numbers is ... complicated
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# gh#numpy/numpy#21094
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test_failok+=" or test_ppc64_ibm_double_double128"
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%endif
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# these tests fail on big endian gh#numpy/numpy#11831
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%ifarch s390x ppc ppc64
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test_failok+=" or TestFReturnCharacter"
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%endif
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# missing instruction set
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%ifarch s390x
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test_failok+=" or test_truncate_f32"
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%endif
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%ifarch %{ix86}
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# (arm 32-bit seems okay here)
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# gh#numpy/numpy#18387
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test_failok+=" or test_pareto"
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# gh#numpy/numpy#18388
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test_failok+=" or test_float_remainder_overflow"
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%endif
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%ifarch %{ix86} %{arm32}
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# too much memory for 32bit
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test_failok+=" or test_identityless_reduction_huge_array"
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test_failok+=" or test_huge_vectordot"
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# invalid int type for 32bit
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test_failok+=" or (test_kind and test_quad_precision)"
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test_failok+=" or (test_kind and test_int)"
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test_failok+=" or (test_kind and test_real)"
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test_failok+=" or (test_multinomial_pvals_float32)"
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%endif
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%ifarch %{arm}
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# https://github.com/numpy/numpy/issues/24001
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test_failok+=" or (test_cpu_features and test_impossible_feature_enable)"
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test_failok+=" or (test_cpu_features and test_features)"
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test_failok+=" or (test_umath and test_unary_spurious_fpexception)"
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%endif
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%ifarch riscv64
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# These tests fail due to non-portable assumptions about the signbit of NaN
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# gh#numpy/numpy#8213
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test_failok+=" or test_fpclass"
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test_failok+=" or test_float"
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%endif
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echo "
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import sys
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import numpy
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r = numpy.test(label='full', verbose=2,
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extra_argv=['-v', '-n', 'auto', '-k'] + sys.argv[1:])
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sys.exit(0 if r else 1)
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" > runobstest.py
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%{python_expand # for all python3 flavors
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export PYTHONPATH=%{buildroot}%{$python_sitearch}
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export PYTHONDONTWRITEBYTECODE=1
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[ -n "$test_failok" ] && $python runobstest.py "${test_failok:4}" ||:
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# test_new_policy: duplicates test runs and output and does not follow our deselection
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$python runobstest.py "not (test_new_policy ${test_failok})"
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}
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popd
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%endif
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%if %{without hpc}
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%pre
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# If libalternatives is used: Removing old update-alternatives entries.
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%python_libalternatives_reset_alternative f2py
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%post
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%python_install_alternative f2py
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%postun
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%python_uninstall_alternative f2py
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%endif
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%files %{python_files}
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%doc README.md THANKS.txt
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%if %{without hpc}
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%python_alternative %{_bindir}/f2py
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%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
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%{_bindir}/f2py3
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%else
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%exclude %{_bindir}/f2py3
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%endif
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%{_bindir}/f2py%{python_bin_suffix}
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%{python_sitearch}/numpy/
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%{python_sitearch}/numpy-%{version}*-info
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%license %{python_sitearch}/numpy/LICENSE.txt
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%exclude %{python_sitearch}/numpy/core/include/
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%exclude %{python_sitearch}/numpy/distutils/mingw/*.c
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%exclude %{python_sitearch}/numpy/distutils/checks/*.c
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%exclude %{python_sitearch}/numpy/f2py/src/
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%exclude %{python_sitearch}/numpy/core/lib/libnpymath.a
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%exclude %{python_sitearch}/numpy/random/lib/libnpyrandom.a
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%else
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%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
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%{p_bindir}/f2py
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%{p_bindir}/f2py3
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%else
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%exclude %{p_bindir}/f2py
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%exclude %{p_bindir}/f2py3
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%endif
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%{p_bindir}/f2py%{python_bin_suffix}
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%{p_python_sitearch}/numpy/
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%{p_python_sitearch}/numpy-%{version}*-info
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%license %{p_python_sitearch}/numpy/LICENSE.txt
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%exclude %{p_python_sitearch}/numpy/core/include/
|
|
%exclude %{p_python_sitearch}/numpy/core/lib/libnpymath.a
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|
%exclude %{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
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%exclude %{p_python_sitearch}/numpy/distutils/mingw/*.c
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%exclude %{p_python_sitearch}/numpy/distutils/checks/*.c
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%exclude %{p_python_sitearch}/numpy/f2py/src/
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%endif
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%if %{with hpc}
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%define hpc_module_pname %{python_flavor}-numpy
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%{hpc_modules_files}
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|
%{hpc_dirs}
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%dir %{hpc_bindir}
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%dir %{hpc_libdir}/python%{hpc_python_version}
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%dir %{p_python_sitearch}
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%endif
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%files %{python_files devel}
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%license LICENSE.txt
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%if %{without hpc}
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%{python_sitearch}/numpy/core/include/
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%{python_sitearch}/numpy/distutils/mingw/*.c
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%{python_sitearch}/numpy/distutils/checks/*.c
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%{python_sitearch}/numpy/f2py/src/
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%{python_sitearch}/numpy/core/lib/libnpymath.a
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%{python_sitearch}/numpy/random/lib/libnpyrandom.a
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%else
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%{p_python_sitearch}/numpy/core/include/
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%{p_python_sitearch}/numpy/core/lib/libnpymath.a
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%{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
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%{p_python_sitearch}/numpy/distutils/mingw/*.c
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%{p_python_sitearch}/numpy/distutils/checks/*.c
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%{p_python_sitearch}/numpy/f2py/src/
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%endif
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%changelog
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