341 lines
14 KiB
Plaintext
341 lines
14 KiB
Plaintext
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-------------------------------------------------------------------
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Fri Jan 19 14:52:05 UTC 2024 - Daniel Garcia <daniel.garcia@suse.com>
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- skip broken tests in s390x, gh#zarr-developers/zarr-python#1375
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bsc#1218611
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-------------------------------------------------------------------
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Wed Dec 27 16:02:56 UTC 2023 - Dirk Müller <dmueller@suse.com>
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- update to 2.16.1:
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* Require ``setuptools_scm`` version ``1.5.4``\+
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* Add ``docs`` requirements to ``pyproject.toml``
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* Fixed caching issue in ``LRUStoreCache``.
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-------------------------------------------------------------------
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Tue Aug 1 13:24:34 UTC 2023 - Markéta Machová <mmachova@suse.com>
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- update to version 2.16
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* Migrate to pyproject.toml and remove redundant infrastructure.
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* Require setuptools 64.0.0+
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* Bump to NumPy 1.20+ in environment.yml.
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* More maintenance changes, special thanks to Outreachy participants
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for contributing to most of the maintenance PRs.
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* Improve Zarr V3 support, adding partial store read/write and
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storage transformers.
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* N5 nows supports Blosc. Remove warnings emitted when using N5Store
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or N5FSStore with a blosc-compressed array.
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* Implement more extensive fallback of getitem/setitem for
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orthogonal indexing.
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* Getitems supports meta_array.
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* Allow for partial codec specification in V3 array metadata.
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* Implemented blockwise (chunk blocks) indexing to zarr.Array.
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-------------------------------------------------------------------
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Thu Jul 27 09:47:45 UTC 2023 - Dirk Müller <dmueller@suse.com>
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- set python311 context for SLE15
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-------------------------------------------------------------------
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Sun Oct 9 19:15:50 UTC 2022 - Arun Persaud <arun@gmx.de>
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- update to version 2.13.3:
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* Improve performance of slice selections with steps by omitting
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chunks with no relevant data. By Richard Shaw #843.
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-------------------------------------------------------------------
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Wed Sep 28 13:11:03 UTC 2022 - Arun Persaud <arun@gmx.de>
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- update to version 2.13.2:
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* Fix test failure on conda-forge builds (again). By :user:`Josh
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Moore <joshmoore>`; see zarr-feedstock#65.
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-------------------------------------------------------------------
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Tue Sep 27 17:21:04 UTC 2022 - Arun Persaud <arun@gmx.de>
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- update to version 2.13.1:
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* Fix test failure on conda-forge builds. By Josh Moore; see
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zarr-feedstock#65.
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-------------------------------------------------------------------
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Sun Sep 25 20:17:30 UTC 2022 - Arun Persaud <arun@gmx.de>
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- specfile:
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* requrie python >= 3.8
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- update to version 2.13.0:
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* Major changes
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+ Support of alternative array classes by introducing a new
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argument, meta_array, that specifies the type/class of the
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underlying array. The meta_array argument can be any class
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instance that can be used as the like argument in NumPy (see NEP
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35). enabling support for CuPy through, for example, the
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creation of a CuPy CPU compressor. By Mads R. B. Kristensen
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#934.
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+ Remove support for Python 3.7 in concert with NumPy
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dependency. By Davis Bennett #1067.
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+ Zarr v3: add support for the default root path rather than
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requiring that all API users pass an explicit path. By Gregory
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R. Lee #1085, #1142.
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* Bug fixes
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+ Remove/relax erroneous “meta” path check (regression). By
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Gregory R. Lee #1123.
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+ Cast all attribute keys to strings (and issue deprecation
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warning). By Mattia Almansi #1066.
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+ Fix bug in N5 storage that prevented arrays located in the root
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of the hierarchy from bearing the n5 keyword. Along with fixing
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this bug, new tests were added for N5 routines that had
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previously been excluded from testing, and type annotations were
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added to the N5 codebase. By Davis Bennett #1092.
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+ Fix bug in LRUEStoreCache in which the current size wasn’t reset
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on invalidation. By BGCMHou and Josh Moore #1076, #1077.
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+ Remove erroneous check that disallowed array keys starting with
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“meta”. By Gregory R. Lee #1105.
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* Documentation
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+ Typo fixes to close quotes. By Pavithra Eswaramoorthy
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+ Added copy button to documentation. By Altay Sansal #1124.
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* Maintenance
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+ Simplify release docs. By Josh Moore #1119.
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+ Pin werkzeug to prevent test hangs. By Davis Bennett #1098.
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+ Fix a few DeepSource.io alerts By Dimitri Papadopoulos Orfanos
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#1080.
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+ Fix URLs. By Dimitri Papadopoulos Orfanos, #1074.
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+ Fix spelling. By Dimitri Papadopoulos Orfanos, #1073.
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+ Update GitHub issue templates with YAML format. By Saransh
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Chopra #1079.
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+ Remove option to return None from _ensure_store. By Greggory Lee
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#1068.
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+ Fix a typo of “integers”. By Richard Scott #1056.
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-------------------------------------------------------------------
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Sun Aug 21 15:21:17 UTC 2022 - Arun Persaud <arun@gmx.de>
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- specfile:
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* update copyright year
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- update to version 2.12.0:
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* Enhancements
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+ Add support for reading and writing Zarr V3. The new
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zarr._store.v3 package has the necessary classes and functions
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for evaluating Zarr V3. Since the format is not yet finalized,
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the classes and functions are not automatically imported into
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the regular zarr name space. Setting the
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ZARR_V3_EXPERIMENTAL_API environment variable will activate
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them. By Greggory Lee; #898, #1006, and #1007 as well as by Josh
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Moore #1032.
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+ Create FSStore from an existing fsspec filesystem. If you have
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created an fsspec filesystem outside of Zarr, you can now pass
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it as a keyword argument to FSStore. By Ryan Abernathey; #911.
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+ Add numpy encoder class for json.dumps By Eric Prestat; #933.
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+ Appending performance improvement to Zarr arrays, e.g., when
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writing to S3. By hailiangzhang; #1014.
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+ Add number encoder for json.dumps to support numpy intergers in
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chunks arguments. By Eric Prestat #697.
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* Bug fixes
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+ Fix bug that made it impossible to create an FSStore on
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unlistable filesystems (e.g. some HTTP servers). By Ryan
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Abernathey; #993.
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* Documentation
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+ Update resize doc to clarify surprising behavior. By
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hailiangzhang; #1022.
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* Maintenance
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+ Added Pre-commit configuration, incl. Yaml Check. By Shivank
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Chaudhary; #1015, #1016.
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+ Fix URL to renamed file in Blosc repo. By Andrew Thomas #1028.
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+ Activate Py 3.10 builds. By Josh Moore #1027.
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+ Make all unignored zarr warnings errors. By Josh Moore #1021.
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- changes from version 2.11.3:
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* Bug fixes
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+ Fix missing case to fully revert change to default
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write_empty_chunks. By Tom White; #1005.
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- changes from version 2.11.2:
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* Bug fixes
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+ Changes the default value of write_empty_chunks to True to
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prevent unanticipated data losses when the data types do not
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have a proper default value when empty chunks are read back
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in. By Vyas Ramasubramani; #965, #1001.
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- changes from version 2.11.1:
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* Bug fixes
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+ Fix bug where indexing with a scalar numpy value returned a
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single-value array. By Ben Jeffery #967.
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+ Removed clobber argument from normalize_store_arg. This enables
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to change data within a opened consolidated group using mode
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“r+” (i.e region write). By Tobias Kölling #975.
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- changes from version 2.11.0:
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* Enhancements
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+ Sparse changes with performance impact! One of the advantages of
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the Zarr format is that it is sparse, which means that chunks
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with no data (more precisely, with data equal to the fill value,
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which is usually 0) don’t need to be written to disk at
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all. They will simply be assumed to be empty at read
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time. However, until this release, the Zarr library would write
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these empty chunks to disk anyway. This changes in this version:
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a small performance penalty at write time leads to significant
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speedups at read time and in filesystem operations in the case
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of sparse arrays. To revert to the old behavior, pass the
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argument write_empty_chunks=True to the array creation
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function. By Juan Nunez-Iglesias; #853 and Davis Bennett; #738.
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+ Fancy indexing. Zarr arrays now support NumPy-style fancy
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indexing with arrays of integer coordinates. This is equivalent
|
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to using zarr.Array.vindex. Mixing slices and integer arrays is
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not supported. By Juan Nunez-Iglesias; #725.
|
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|
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+ New base class. This release of Zarr Python introduces a new
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BaseStore class that all provided store classes implemented in
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Zarr Python now inherit from. This is done as part of
|
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|
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refactoring to enable future support of the Zarr version 3
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spec. Existing third-party stores that are a MutableMapping
|
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|
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(e.g. dict) can be converted to a new-style key/value store
|
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inheriting from BaseStore by passing them as the argument to the
|
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|
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new zarr.storage.KVStore class. For backwards compatibility,
|
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various higher-level array creation and convenience functions
|
|||
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still accept plain Python dicts or other mutable mappings for
|
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|
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the store argument, but will internally convert these to a
|
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KVStore. By Greggory Lee; #839, #789, and #950.
|
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+ Allow to assign array fill_values and update metadata
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accordingly. By Ryan Abernathey, #662.
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+ Allow to update array fill_values By Matthias Bussonnier #665.
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* Bug fixes
|
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+ Fix bug where the checksum of zipfiles is wrong By Oren Watson
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#930.
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+ Fix consolidate_metadata with FSStore. By Joe Hamman #916.
|
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+ Unguarded next inside generator. By Dimitri Papadopoulos Orfanos
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#889.
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* Documentation
|
|||
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+ Update docs creation of dev env. By Ray Bell #921.
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+ Update docs to use python -m pytest. By Ray Bell #923.
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+ Fix versionadded tag in zarr.core.Array docstring. By Juan
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Nunez-Iglesias #852.
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+ Doctest seem to be stricter now, updating tostring() to
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tobytes(). By John Kirkham #907.
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+ Minor doc fix. By Mads R. B. Kristensen #937.
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* Maintenance
|
|||
|
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+ Upgrade MongoDB in test env. By Joe Hamman #939.
|
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|
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+ Pass dimension_separator on fixture generation. By Josh Moore
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#858.
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+ Activate Python 3.9 in GitHub Actions. By Josh Moore #859.
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+ Drop shortcut fsspec[s3] for dependency. By Josh Moore #920.
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+ and a swath of code-linting improvements by Dimitri Papadopoulos
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Orfanos:
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o Unnecessary comprehension (#899)
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o Unnecessary None provided as default (#900)
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o use an if expression instead of and/or (#888)
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o Remove unnecessary literal (#891)
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o Decorate a few method with @staticmethod (#885)
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o Drop unneeded return (#884)
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o Drop explicit object inheritance from class-es (#886)
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o Unnecessary comprehension (#883)
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o Codespell configuration (#882)
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o Fix typos found by codespell (#880)
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o Proper C-style formatting for integer (#913)
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o Add LGTM.com / DeepSource.io configuration files (#909)
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|
|||
|
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- changes from version 2.10.3:
|
|||
|
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* Bug fixes
|
|||
|
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+ N5 keywords now emit UserWarning instead of raising a
|
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ValueError. By Boaz Mohar; #860.
|
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|
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+ blocks_to_decompress not used in read_part function. By Boaz
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Mohar; #861.
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+ defines blocksize for array, updates hexdigest values. By Andrew
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Fulton; #867.
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+ Fix test failure on Debian and conda-forge builds. By Josh
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Moore; #871.
|
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|
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|
|||
|
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- changes from version 2.10.2:
|
|||
|
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* Bug fixes
|
|||
|
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+ Fix NestedDirectoryStore datasets without dimension_separator
|
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|
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metadata. By Josh Moore; #850.
|
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|
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|
|||
|
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- changes from version 2.10.1:
|
|||
|
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* Bug fixes
|
|||
|
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+ Fix regression by setting normalize_keys=False in fsstore
|
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|
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constructor. By Davis Bennett; #842.
|
|||
|
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|
|||
|
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- changes from version 2.10.0:
|
|||
|
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* Enhancements
|
|||
|
|
+ Add N5FSStore. By Davis Bennett; #793.
|
|||
|
|
* Bug fixes
|
|||
|
|
+ Ignore None dim_separators in save_array. By Josh Moore; #831.
|
|||
|
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|
|||
|
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-------------------------------------------------------------------
|
|||
|
|
Wed Sep 1 09:34:16 UTC 2021 - Matej Cepl <mcepl@suse.com>
|
|||
|
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|
|||
|
|
- Update to 2.9.5:
|
|||
|
|
- Fix FSStore.listdir behavior for nested directories (replaces
|
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|
|
now unnecessary skip-825-TestFSStore-test_create.patch).
|
|||
|
|
- Fix structured arrays that contain objects (which replaces
|
|||
|
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zarr-pr802-fsspec-2021-07.patch).
|
|||
|
|
|
|||
|
|
-------------------------------------------------------------------
|
|||
|
|
Sat Aug 28 08:54:39 UTC 2021 - Matej Cepl <mcepl@suse.com>
|
|||
|
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|
|||
|
|
- Update to 2.9.3:
|
|||
|
|
- Mark the fact that some tests that require fsspec, without
|
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|
|
compromising the code coverage score. By Ben Williams; #823.
|
|||
|
|
- Only inspect alternate node type if desired isn’t
|
|||
|
|
present. By Trevor Manz; #696.
|
|||
|
|
- Correct conda-forge deployment of Zarr by fixing some Zarr
|
|||
|
|
tests. By Ben Williams; #821.
|
|||
|
|
- Add skip-825-TestFSStore-test_create.patch
|
|||
|
|
(gh#zarr-developers/zarr-python#825).
|
|||
|
|
|
|||
|
|
-------------------------------------------------------------------
|
|||
|
|
Mon Aug 23 16:51:52 UTC 2021 - Ben Greiner <code@bnavigator.de>
|
|||
|
|
|
|||
|
|
- Update to version 2.9.0
|
|||
|
|
* This release of Zarr Python is the first release of Zarr to not
|
|||
|
|
support Python 3.6.
|
|||
|
|
* Update ABSStore for compatibility with newer azure.storage.
|
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|
|
blob.
|
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|
|
* Pathlib support.
|
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|
|
* Fix dimension_separator support.
|
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|
|
* Extract ABSStore to zarr._storage.absstore.
|
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|
|
* TST: add missing assert in test_hexdigest.
|
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|
|
- Add zarr-pr802-fsspec-2021-07.patch
|
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|
|
* gh#zarr-developers/zarr-python#802
|
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|
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* gh#zarr-developers/zarr-python#812
|
|||
|
|
|
|||
|
|
-------------------------------------------------------------------
|
|||
|
|
Fri Jul 16 15:07:21 UTC 2021 - Ben Greiner <code@bnavigator.de>
|
|||
|
|
|
|||
|
|
- Update to v2.8.3
|
|||
|
|
* FSStore: default to normalize_keys=False
|
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|
|
- Release 2.8.2
|
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|
|
* Add section on rechunking to tutorial
|
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|
|
* Expand FSStore tests and fix implementation issues
|
|||
|
|
* Updated ipytree warning for jlab3
|
|||
|
|
* Update Python classifiers (Zarr is stable!)
|
|||
|
|
- Release 2.8.1
|
|||
|
|
* raise an error if create_dataset’s dimension_separator is
|
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|
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inconsistent
|
|||
|
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- Release 2.8.0
|
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|
|
* V2 Specification Update
|
|||
|
|
* Introduce optional dimension_separator .zarray key for nested
|
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chunks.
|
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|
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- Release 2.7.1
|
|||
|
|
* Update Array to respect FSStore’s key_separator (#718)
|
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|
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- Release 2.7.0
|
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|
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* Start stop for iterator (islice())
|
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* Add capability to partially read and decompress chunks
|
|||
|
|
* Make DirectoryStore __setitem__ resilient against antivirus
|
|||
|
|
file locking
|
|||
|
|
* Compare test data’s content generally
|
|||
|
|
* Fix dtype usage in zarr/meta.py
|
|||
|
|
* Fix FSStore key_seperator usage
|
|||
|
|
* Simplify text handling in DB Store
|
|||
|
|
|
|||
|
|
-------------------------------------------------------------------
|
|||
|
|
Wed Feb 17 21:08:29 UTC 2021 - Ben Greiner <code@bnavigator.de>
|
|||
|
|
|
|||
|
|
- Requires numpy: NEP 29, NumPy 1.20 in TW dropped Python 3.6
|
|||
|
|
support. Skip python36 build.
|
|||
|
|
|
|||
|
|
-------------------------------------------------------------------
|
|||
|
|
Mon Dec 28 12:16:28 UTC 2020 - Benjamin Greiner <code@bnavigator.de>
|
|||
|
|
|
|||
|
|
- Initial specfile for v2.6.1
|
|||
|
|
- required by dask
|