Migrate the ProxySHA256 data into postgresql DB

The calculation of the sha256 and the mimetype is local due to that

lib/db.py

@@ -221,6 +221,45 @@ class DB:
             "ALTER TABLE revisions ALTER COLUMN api_url SET NOT NULL",
             "UPDATE scheme SET version=21",
         )
+        schemes[22] = (
+            """DROP TABLE IF EXISTS lfs_oids""",
+            """
+            CREATE TABLE lfs_oids (
+                id              SERIAL PRIMARY KEY,
+                project         VARCHAR(255) NOT NULL,
+                package         VARCHAR(255) NOT NULL,
+                filename        VARCHAR(255) NOT NULL,
+                rev             VARCHAR(40) NOT NULL,
+                sha256          VARCHAR(70) NOT NULL,
+                size            INTEGER NOT NULL,
+                mimetype        VARCHAR(255) NOT NULL,
+                file_md5        VARCHAR(40) NOT NULL
+            )
+            """,
+            "CREATE UNIQUE INDEX ON lfs_oids (sha256,size)",
+            "CREATE INDEX ON revisions(package)",
+            """DROP TABLE IF EXISTS text_files""",
+            """
+            CREATE TABLE text_files (
+                id              SERIAL PRIMARY KEY,
+                package         VARCHAR(255) NOT NULL,
+                filename        VARCHAR(255) NOT NULL
+            )
+            """,
+            "CREATE UNIQUE INDEX ON text_files (package,filename)",
+            """DROP TABLE IF EXISTS lfs_oid_in_package""",
+            """
+            CREATE TABLE lfs_oid_in_package (
+                id              SERIAL PRIMARY KEY,
+                lfs_oid_id      INTEGER NOT NULL,
+                package         VARCHAR(255) NOT NULL,
+                filename        VARCHAR(255) NOT NULL
+            )
+            """,
+            "CREATE INDEX ON text_files(package)",
+            "CREATE INDEX ON lfs_oid_in_package(package)",
+            "UPDATE scheme SET version=22",
+        )
         schema_version = self.schema_version()
         if (schema_version + 1) not in schemes:
             return

lib/git_exporter.py

@@ -17,7 +17,8 @@ class GitExporter:
         self.obs = OBS(api_url)
         self.project = project
         self.package = package
-        self.proxy_sha256 = ProxySHA256(self.obs, enabled=True)
+        self.db = DB()
+        self.proxy_sha256 = ProxySHA256(self.obs, self.db)
         self.git = Git(
             repodir / package,
             committer="Git OBS Bridge",
@@ -59,8 +60,7 @@ class GitExporter:
         return left_to_commit
 
     def export_as_git(self):
-        db = DB()
+        tree = TreeBuilder(self.db).build(self.project, self.package)
-        tree = TreeBuilder(db).build(self.project, self.package)
         flats = tree.as_flat_list()
 
         branch_state = {"factory": None, "devel": None}
@@ -75,9 +75,8 @@ class GitExporter:
 
         for flat in left_to_commit:
             if flat.commit.userid not in users:
-                users[flat.commit.userid] = User.find(db, flat.commit.userid)
+                users[flat.commit.userid] = User.find(self.db, flat.commit.userid)
             flat.user = users[flat.commit.userid]
-            logging.debug(f"USER {flat.user}")
             self.gc_cnt -= 1
             if self.gc_cnt <= 0 and self.gc_interval:
                 self.run_gc()
@@ -88,10 +87,14 @@ class GitExporter:
         self.gc_cnt = self.gc_interval
         self.git.gc()
 
+    def is_lfs_file(self, package, filename, size):
+        if not is_binary_or_large(filename, size):
+            return False
+        return not self.proxy_sha256.is_text(package, filename)
+
     def commit_file(self, flat, file, size, md5):
         # have such files been detected as text mimetype before?
-        is_text = self.proxy_sha256.is_text(flat.commit.package, file.name)
+        if self.is_lfs_file(flat.commit.package, file.name, size):
-        if not is_text and is_binary_or_large(file.name, size):
             file_sha256 = self.proxy_sha256.get_or_put(
                 flat.commit.project,
                 flat.commit.package,
@@ -100,8 +103,13 @@ class GitExporter:
                 md5,
                 size,
             )
-            self.git.add_lfs(file.name, file_sha256["sha256"], size)
+            # as it's newly registered, it might be a text file now, so double check
-        else:
+            if not self.proxy_sha256.is_text(flat.commit.package, file.name):
+                self.git.add_lfs(file.name, file_sha256, size)
+                return
+        self.commit_non_lfs_file(flat, file, md5)
+
+    def commit_non_lfs_file(self, flat, file, md5):
         self.obs.change_url(flat.commit.api_url)
         self.obs.download(
             flat.commit.project,

lib/hash.py

@@ -0,0 +1,20 @@
+import functools
+import hashlib
+
+
+def _hash(hash_alg, file_or_path):
+    h = hash_alg()
+
+    def __hash(f):
+        while chunk := f.read(1024 * 4):
+            h.update(chunk)
+
+    if hasattr(file_or_path, "read"):
+        __hash(file_or_path)
+    else:
+        with file_or_path.open("rb") as f:
+            __hash(f)
+    return h.hexdigest()
+
+
+md5 = functools.partial(_hash, hashlib.md5)

lib/lfs_oid.py

@@ -0,0 +1,67 @@
+import logging
+import sys
+
+from lib.db import DB
+
+
+# no need for this class yet, so just leave the migration code here
+class LFSOid:
+    def __init__(self) -> None:
+        pass
+
+
+if __name__ == "__main__":
+    """
+    Import the old data - it only makes sense on a DB with previously scanned revisions
+    curl -s  https://stephan.kulow.org/git_lfs.csv.xz | xz -cd | PYTHONPATH=$PWD /usr/bin/python3 lib/lfs_oid.py
+    """
+    db = DB()
+    logging.basicConfig(level=logging.DEBUG)
+    with db.cursor() as cur:
+        while True:
+            line = sys.stdin.readline()
+            if not line:
+                break
+            (
+                project,
+                package,
+                filename,
+                rev,
+                sha256,
+                size,
+                mimetype,
+                md5,
+            ) = line.strip().split("\t")
+            cur.execute(
+                """INSERT INTO lfs_oids (project,package,filename,rev,sha256,size,mimetype,file_md5)
+                VALUES (%s,%s,%s,%s,%s,%s,%s,%s) ON CONFLICT DO NOTHING""",
+                (project, package, filename, rev, sha256, size, mimetype, md5),
+            )
+
+        cur.execute(
+            """
+            CREATE TEMPORARY TABLE lfs_oid_in_revision (
+                revision_id INTEGER, 
+                lfs_oid_id  INTEGER NOT NULL,
+                name        VARCHAR(255) NOT NULL
+            )
+            """
+        )
+        cur.execute(
+            """INSERT INTO lfs_oid_in_revision (revision_id, lfs_oid_id, name)
+                       SELECT revision_id,lfs_oids.id,files.name FROM lfs_oids JOIN files ON files.md5=lfs_oids.file_md5"""
+        )
+        cur.execute(
+            """INSERT INTO text_files (package,filename)
+                       SELECT DISTINCT r.package, lfs_oid_in_revision.name FROM lfs_oids
+                          JOIN lfs_oid_in_revision on lfs_oid_in_revision.lfs_oid_id=lfs_oids.id
+                          JOIN revisions r ON r.id=lfs_oid_in_revision.revision_id
+                          WHERE lfs_oids.mimetype like 'text/%' ON CONFLICT DO NOTHING"""
+        )
+        cur.execute(
+            """INSERT INTO lfs_oid_in_package (lfs_oid_id, package, filename)
+                        SELECT DISTINCT lfs_oids.id,r.package, lfs_oid_in_revision.name FROM lfs_oids
+                        JOIN lfs_oid_in_revision on lfs_oid_in_revision.lfs_oid_id=lfs_oids.id
+                        JOIN revisions r ON r.id=lfs_oid_in_revision.revision_id"""
+        )
+    db.conn.commit()

lib/obs.py

@@ -9,7 +9,7 @@ from urllib.error import HTTPError
 
 import osc.core
 
-from lib.proxy_sha256 import md5
+from lib.hash import md5
 from lib.request import Request
 from lib.user import User
 

lib/proxy_sha256.py

@@ -1,114 +1,142 @@
-import functools
 import hashlib
 import logging
-import urllib
+import os
+
+try:
+    import magic
+except:
+    print("Install python3-python-magic, not python3-magic")
+    raise
 
 import requests
 
-
+from lib.db import DB
-def _hash(hash_alg, file_or_path):
+from lib.obs import OBS
-    h = hash_alg()
-
-    def __hash(f):
-        while chunk := f.read(1024 * 4):
-            h.update(chunk)
-
-    if hasattr(file_or_path, "read"):
-        __hash(file_or_path)
-    else:
-        with file_or_path.open("rb") as f:
-            __hash(f)
-    return h.hexdigest()
-
-
-md5 = functools.partial(_hash, hashlib.md5)
-sha256 = functools.partial(_hash, hashlib.sha256)
 
 
 class ProxySHA256:
-    def __init__(self, obs, url=None, enabled=True):
+    def __init__(self, obs: OBS, db: DB):
         self.obs = obs
-        self.url = url if url else "http://source.dyn.cloud.suse.de"
+        self.db = db
-        self.enabled = enabled
         self.hashes = None
         self.texts = None
-
+        self.mime = None
-    def load_package(self, package):
-        # _project is unreachable for the proxy - due to being a fake package
-        if package == "_project":
-            self.enabled = False
-            self.texts = set(["_config", "_service", "_staging_workflow"])
-            self.hashes = dict()
-            return
-        logging.debug("Retrieve all previously defined SHA256")
-        response = requests.get(
-            f"http://source.dyn.cloud.suse.de/package/{package}", timeout=50
-        )
-        if response.status_code == 200:
-            json = response.json()
-            self.hashes = json["shas"]
-            self.texts = set(json["texts"])
 
     def get(self, package, name, file_md5):
-        key = f"{file_md5}-{name}"
         if self.hashes is None:
-            if self.enabled:
+            self.load_hashes(package)
-                self.load_package(package)
+        key = f"{file_md5}-{name}"
-            else:
+        ret = self.hashes.get(key)
-                self.hashes = {}
+        return ret
-        return self.hashes.get(key, None)
 
-    def _proxy_put(self, project, package, name, revision, file_md5, size):
+    def load_hashes(self, package):
-        quoted_name = urllib.parse.quote(name)
+        with self.db.cursor() as cur:
-        url = f"{self.obs.url}/public/source/{project}/{package}/{quoted_name}?rev={revision}"
+            cur.execute(
-        response = requests.put(
+                """SELECT lfs_oids.file_md5,lop.filename,lfs_oids.sha256,lfs_oids.size
-            self.url,
+               FROM lfs_oid_in_package lop
-            data={
+               JOIN lfs_oids ON lfs_oids.id=lop.lfs_oid_id
-                "hash": file_md5,
+               WHERE lop.package=%s""",
-                "filename": name,
+                (package,),
-                "url": url,
-                "package": package,
-            },
-            timeout=10,
             )
-        if response.status_code != 200:
+            self.hashes = {
-            raise Exception(f"Redirector error on {self.url} for {url}")
+                f"{row[0]}-{row[1]}": (row[2], row[3]) for row in cur.fetchall()
-
-        key = (file_md5, name)
-        self.hashes[key] = {
-            "sha256": response.content.decode("utf-8"),
-            "fsize": size,
             }
-        return self.hashes[key]
-
-    def _obs_put(self, project, package, name, revision, file_md5, size):
-        key = (file_md5, name)
-        self.hashes[key] = {
-            "sha256": sha256(self.obs._download(project, package, name, revision)),
-            "fsize": size,
-        }
-        return self.hashes[key]
 
     def put(self, project, package, name, revision, file_md5, size):
-        if not self.enabled:
+
-            return self._obs_put(project, package, name, revision, file_md5, size)
+        if not self.mime:
-        return self._proxy_put(project, package, name, revision, file_md5, size)
+            self.mime = magic.Magic(mime=True)
+
+        mimetype = None
+        logging.debug(f"Add LFS for {project}/{package}/{name}")
+        fin = self.obs._download(project, package, name, revision)
+        sha = hashlib.sha256()
+        while True:
+            buffer = fin.read(10000)
+            if not buffer:
+                break
+            sha.update(buffer)
+            # only guess from the first 10K
+            if not mimetype:
+                mimetype = self.mime.from_buffer(buffer)
+        fin.close()
+        sha = sha.hexdigest()
+        with self.db.cursor() as cur:
+            # we UPDATE here so the return functions. conflicts are likely as we look for filename/md5 but conflict on sha256
+            cur.execute(
+                """INSERT INTO lfs_oids (project,package,filename,rev,sha256,size,mimetype,file_md5)
+                          VALUES (%s,%s,%s,%s,%s,%s,%s,%s)
+                          ON CONFLICT (sha256,size) DO UPDATE SET mimetype=EXCLUDED.mimetype
+                          RETURNING id""",
+                (
+                    project,
+                    package,
+                    name,
+                    revision,
+                    sha,
+                    size,
+                    mimetype,
+                    file_md5,
+                ),
+            )
+            row = cur.fetchone()
+            lfs_oid_id = row[0]
+            cur.execute(
+                """INSERT INTO lfs_oid_in_package (package,filename,lfs_oid_id) 
+                        VALUES (%s,%s,%s)""",
+                (package, name, lfs_oid_id),
+            )
+            if mimetype.startswith("text/"):
+                cur.execute(
+                    "INSERT INTO text_files (package,filename) VALUES (%s,%s)",
+                    (package, name),
+                )
+            self.db.conn.commit()
+
+        if os.getenv("GITEA_REGISTER_SECRET"):
+            data = {
+                "secret": os.getenv("GITEA_REGISTER_SECRET"),
+                "project": project,
+                "package": package,
+                "filename": name,
+                "rev": revision,
+                "sha256": sha,
+                "size": size,
+            }
+
+            url = "http://gitea.opensuse.org:9999/register"
+            response = requests.post(
+                url,
+                data=data,
+                timeout=10,
+            )
+            logging.debug(f"Registered {response.status_code}")
+        else:
+            logging.info("Not registering LFS due to missing secret")
+
+        # reset
+        self.hashes = None
+        self.texts = None
+        return self.get(package, name, file_md5)
 
     def is_text(self, package, filename):
         if self.texts is None:
-            if self.enabled:
+            self.load_texts(package)
-                self.load_package(package)
-            else:
-                self.texts = set()
         return filename in self.texts
 
+    def load_texts(self, package):
+        self.texts = set()
+        with self.db.cursor() as cur:
+            cur.execute("SELECT filename from text_files where package=%s", (package,))
+            for row in cur.fetchall():
+                self.texts.add(row[0])
+
     def get_or_put(self, project, package, name, revision, file_md5, size):
         result = self.get(package, name, file_md5)
         if not result:
             result = self.put(project, package, name, revision, file_md5, size)
 
-        # Sanity check
+        sha256, db_size = result
-        if result["fsize"] != size:
+        assert db_size == size
-            raise Exception(f"Redirector has different size for {name}")
 
-        return result
+        return sha256