#include "fch.h" #include "cmph_structs.h" #include "fch_structs.h" #include "hash.h" #include "bitbool.h" #include "fch_buckets.h" #include #include #include #include #include #include #define INDEX 0 /* alignment index within a bucket */ //#define DEBUG #include "debug.h" static fch_buckets_t * mapping(cmph_config_t *mph); static cmph_uint32 * ordering(fch_buckets_t * buckets); static cmph_uint8 check_for_collisions_h2(fch_config_data_t *fch, fch_buckets_t * buckets, cmph_uint32 *sorted_indexes); static void permut(cmph_uint32 * vector, cmph_uint32 n); static cmph_uint8 searching(fch_config_data_t *fch, fch_buckets_t *buckets, cmph_uint32 *sorted_indexes); fch_config_data_t *fch_config_new(void) { fch_config_data_t *fch; fch = (fch_config_data_t *)malloc(sizeof(fch_config_data_t)); assert(fch); memset(fch, 0, sizeof(fch_config_data_t)); fch->hashfuncs[0] = CMPH_HASH_JENKINS; fch->hashfuncs[1] = CMPH_HASH_JENKINS; fch->m = fch->b = 0; fch->c = fch->p1 = fch->p2 = 0.0; fch->g = NULL; fch->h1 = NULL; fch->h2 = NULL; return fch; } void fch_config_destroy(cmph_config_t *mph) { fch_config_data_t *data = (fch_config_data_t *)mph->data; //DEBUGP("Destroying algorithm dependent data\n"); free(data); } void fch_config_set_hashfuncs(cmph_config_t *mph, CMPH_HASH *hashfuncs) { fch_config_data_t *fch = (fch_config_data_t *)mph->data; CMPH_HASH *hashptr = hashfuncs; cmph_uint32 i = 0; while(*hashptr != CMPH_HASH_COUNT) { if (i >= 2) break; //fch only uses two hash functions fch->hashfuncs[i] = *hashptr; ++i, ++hashptr; } } cmph_uint32 mixh10h11h12(cmph_uint32 b, double p1, double p2, cmph_uint32 initial_index) { register cmph_uint32 int_p2 = (cmph_uint32)p2; if (initial_index < p1) initial_index %= int_p2; /* h11 o h10 */ else { /* h12 o h10 */ initial_index %= b; if(initial_index < p2) initial_index += int_p2; } return initial_index; } cmph_uint32 fch_calc_b(double c, cmph_uint32 m) { return (cmph_uint32)ceil((c*m)/(log((double)m)/log(2.0) + 1)); } double fch_calc_p1(cmph_uint32 m) { return ceil(0.55*m); } double fch_calc_p2(cmph_uint32 b) { return ceil(0.3*b); } static fch_buckets_t * mapping(cmph_config_t *mph) { cmph_uint32 i = 0; fch_buckets_t *buckets = NULL; fch_config_data_t *fch = (fch_config_data_t *)mph->data; if (fch->h1) hash_state_destroy(fch->h1); fch->h1 = hash_state_new(fch->hashfuncs[0], fch->m); fch->b = fch_calc_b(fch->c, fch->m); fch->p1 = fch_calc_p1(fch->m); fch->p2 = fch_calc_p2(fch->b); //DEBUGP("b:%u p1:%f p2:%f\n", fch->b, fch->p1, fch->p2); buckets = fch_buckets_new(fch->b); mph->key_source->rewind(mph->key_source->data); for(i = 0; i < fch->m; i++) { cmph_uint32 h1, keylen; char *key = NULL; mph->key_source->read(mph->key_source->data, &key, &keylen); h1 = hash(fch->h1, key, keylen) % fch->m; h1 = mixh10h11h12 (fch->b, fch->p1, fch->p2, h1); fch_buckets_insert(buckets, h1, key, keylen); key = NULL; // transger memory ownership } return buckets; } // returns the buckets indexes sorted by their sizes. static cmph_uint32 * ordering(fch_buckets_t * buckets) { return fch_buckets_get_indexes_sorted_by_size(buckets); } /* Check whether function h2 causes collisions among the keys of each bucket */ static cmph_uint8 check_for_collisions_h2(fch_config_data_t *fch, fch_buckets_t * buckets, cmph_uint32 *sorted_indexes) { //cmph_uint32 max_size = fch_buckets_get_max_size(buckets); cmph_uint8 * hashtable = (cmph_uint8 *)calloc((size_t)fch->m, sizeof(cmph_uint8)); cmph_uint32 nbuckets = fch_buckets_get_nbuckets(buckets); cmph_uint32 i = 0, index = 0, j =0; for (i = 0; i < nbuckets; i++) { cmph_uint32 nkeys = fch_buckets_get_size(buckets, sorted_indexes[i]); memset(hashtable, 0, (size_t)fch->m); //DEBUGP("bucket %u -- nkeys: %u\n", i, nkeys); for (j = 0; j < nkeys; j++) { char * key = fch_buckets_get_key(buckets, sorted_indexes[i], j); cmph_uint32 keylen = fch_buckets_get_keylength(buckets, sorted_indexes[i], j); index = hash(fch->h2, key, keylen) % fch->m; if(hashtable[index]) { // collision detected free(hashtable); return 1; } hashtable[index] = 1; } } free(hashtable); return 0; } static void permut(cmph_uint32 * vector, cmph_uint32 n) { cmph_uint32 i, j, b; for (i = 0; i < n; i++) { j = (cmph_uint32) rand() % n; b = vector[i]; vector[i] = vector[j]; vector[j] = b; } } static cmph_uint8 searching(fch_config_data_t *fch, fch_buckets_t *buckets, cmph_uint32 *sorted_indexes) { cmph_uint32 * random_table = (cmph_uint32 *) calloc((size_t)fch->m, sizeof(cmph_uint32)); cmph_uint32 * map_table = (cmph_uint32 *) calloc((size_t)fch->m, sizeof(cmph_uint32)); cmph_uint32 iteration_to_generate_h2 = 0; cmph_uint32 searching_iterations = 0; cmph_uint8 restart = 0; cmph_uint32 nbuckets = fch_buckets_get_nbuckets(buckets); cmph_uint32 i, j, z, counter = 0, filled_count = 0; if (fch->g) free (fch->g); fch->g = (cmph_uint32 *) calloc((size_t)fch->b, sizeof(cmph_uint32)); //DEBUGP("max bucket size: %u\n", fch_buckets_get_max_size(buckets)); for(i = 0; i < fch->m; i++) { random_table[i] = i; } permut(random_table, fch->m); for(i = 0; i < fch->m; i++) { map_table[random_table[i]] = i; } do { if (fch->h2) hash_state_destroy(fch->h2); fch->h2 = hash_state_new(fch->hashfuncs[1], fch->m); restart = check_for_collisions_h2(fch, buckets, sorted_indexes); filled_count = 0; if (!restart) { searching_iterations++; iteration_to_generate_h2 = 0; //DEBUGP("searching_iterations: %u\n", searching_iterations); } else { iteration_to_generate_h2++; //DEBUGP("iteration_to_generate_h2: %u\n", iteration_to_generate_h2); } for(i = 0; (i < nbuckets) && !restart; i++) { cmph_uint32 bucketsize = fch_buckets_get_size(buckets, sorted_indexes[i]); if (bucketsize == 0) { restart = 0; // false break; } else restart = 1; // true for(z = 0; (z < (fch->m - filled_count)) && restart; z++) { char * key = fch_buckets_get_key(buckets, sorted_indexes[i], INDEX); cmph_uint32 keylen = fch_buckets_get_keylength(buckets, sorted_indexes[i], INDEX); cmph_uint32 h2 = hash(fch->h2, key, keylen) % fch->m; counter = 0; restart = 0; // false fch->g[sorted_indexes[i]] = (fch->m + random_table[filled_count + z] - h2) % fch->m; //DEBUGP("g[%u]: %u\n", sorted_indexes[i], fch->g[sorted_indexes[i]]); j = INDEX; do { cmph_uint32 index = 0; key = fch_buckets_get_key(buckets, sorted_indexes[i], j); keylen = fch_buckets_get_keylength(buckets, sorted_indexes[i], j); h2 = hash(fch->h2, key, keylen) % fch->m; index = (h2 + fch->g[sorted_indexes[i]]) % fch->m; //DEBUGP("key:%s keylen:%u index: %u h2:%u bucketsize:%u\n", key, keylen, index, h2, bucketsize); if (map_table[index] >= filled_count) { cmph_uint32 y = map_table[index]; cmph_uint32 ry = random_table[y]; random_table[y] = random_table[filled_count]; random_table[filled_count] = ry; map_table[random_table[y]] = y; map_table[random_table[filled_count]] = filled_count; filled_count++; counter ++; } else { restart = 1; // true filled_count = filled_count - counter; counter = 0; break; } j = (j + 1) % bucketsize; } while(j % bucketsize != INDEX); } //getchar(); } } while(restart && (searching_iterations < 10) && (iteration_to_generate_h2 < 1000)); free(map_table); free(random_table); return restart; } cmph_t *fch_new(cmph_config_t *mph, double c) { cmph_t *mphf = NULL; fch_data_t *fchf = NULL; cmph_uint32 iterations = 100; cmph_uint8 restart_mapping = 0; fch_buckets_t * buckets = NULL; cmph_uint32 * sorted_indexes = NULL; fch_config_data_t *fch = (fch_config_data_t *)mph->data; fch->m = mph->key_source->nkeys; //DEBUGP("m: %f\n", fch->m); if (c <= 2) c = 2.6; // validating restrictions over parameter c. fch->c = c; //DEBUGP("c: %f\n", fch->c); fch->h1 = NULL; fch->h2 = NULL; fch->g = NULL; do { if (mph->verbosity) { fprintf(stderr, "Entering mapping step for mph creation of %u keys\n", fch->m); } if (buckets) fch_buckets_destroy(buckets); buckets = mapping(mph); if (mph->verbosity) { fprintf(stderr, "Starting ordering step\n"); } if (sorted_indexes) free (sorted_indexes); sorted_indexes = ordering(buckets); if (mph->verbosity) { fprintf(stderr, "Starting searching step.\n"); } restart_mapping = searching(fch, buckets, sorted_indexes); iterations--; } while(restart_mapping && iterations > 0); if (buckets) fch_buckets_destroy(buckets); if (sorted_indexes) free (sorted_indexes); if (iterations == 0) return NULL; mphf = (cmph_t *)malloc(sizeof(cmph_t)); mphf->algo = mph->algo; fchf = (fch_data_t *)malloc(sizeof(fch_data_t)); fchf->g = fch->g; fch->g = NULL; //transfer memory ownership fchf->h1 = fch->h1; fch->h1 = NULL; //transfer memory ownership fchf->h2 = fch->h2; fch->h2 = NULL; //transfer memory ownership fchf->p2 = fch->p2; fchf->p1 = fch->p1; fchf->b = fch->b; fchf->c = fch->c; fchf->m = fch->m; mphf->data = fchf; mphf->size = fch->m; //DEBUGP("Successfully generated minimal perfect hash\n"); if (mph->verbosity) { fprintf(stderr, "Successfully generated minimal perfect hash function\n"); } return mphf; } int fch_dump(cmph_t *mphf, FILE *fd) { char *buf = NULL; cmph_uint32 buflen; register size_t nbytes; fch_data_t *data = (fch_data_t *)mphf->data; #ifdef DEBUG cmph_uint32 i; #endif __cmph_dump(mphf, fd); hash_state_dump(data->h1, &buf, &buflen); //DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); nbytes = fwrite(&buflen, sizeof(cmph_uint32), (size_t)1, fd); nbytes = fwrite(buf, (size_t)buflen, (size_t)1, fd); free(buf); hash_state_dump(data->h2, &buf, &buflen); //DEBUGP("Dumping hash state with %u bytes to disk\n", buflen); nbytes = fwrite(&buflen, sizeof(cmph_uint32), (size_t)1, fd); nbytes = fwrite(buf, (size_t)buflen, (size_t)1, fd); free(buf); nbytes = fwrite(&(data->m), sizeof(cmph_uint32), (size_t)1, fd); nbytes = fwrite(&(data->c), sizeof(double), (size_t)1, fd); nbytes = fwrite(&(data->b), sizeof(cmph_uint32), (size_t)1, fd); nbytes = fwrite(&(data->p1), sizeof(double), (size_t)1, fd); nbytes = fwrite(&(data->p2), sizeof(double), (size_t)1, fd); nbytes = fwrite(data->g, sizeof(cmph_uint32)*(data->b), (size_t)1, fd); if (nbytes == 0 && ferror(fd)) { fprintf(stderr, "ERROR: %s\n", strerror(errno)); return 0; } #ifdef DEBUG fprintf(stderr, "G: "); for (i = 0; i < data->b; ++i) fprintf(stderr, "%u ", data->g[i]); fprintf(stderr, "\n"); #endif return 1; } void fch_load(FILE *f, cmph_t *mphf) { char *buf = NULL; cmph_uint32 buflen; register size_t nbytes; fch_data_t *fch = (fch_data_t *)malloc(sizeof(fch_data_t)); #ifdef DEBUG cmph_uint32 i; #endif //DEBUGP("Loading fch mphf\n"); mphf->data = fch; //DEBUGP("Reading h1\n"); fch->h1 = NULL; nbytes = fread(&buflen, sizeof(cmph_uint32), (size_t)1, f); //DEBUGP("Hash state of h1 has %u bytes\n", buflen); buf = (char *)malloc((size_t)buflen); nbytes = fread(buf, (size_t)buflen, (size_t)1, f); fch->h1 = hash_state_load(buf, buflen); free(buf); //DEBUGP("Loading fch mphf\n"); mphf->data = fch; //DEBUGP("Reading h2\n"); fch->h2 = NULL; nbytes = fread(&buflen, sizeof(cmph_uint32), (size_t)1, f); //DEBUGP("Hash state of h2 has %u bytes\n", buflen); buf = (char *)malloc((size_t)buflen); nbytes = fread(buf, (size_t)buflen, (size_t)1, f); fch->h2 = hash_state_load(buf, buflen); free(buf); //DEBUGP("Reading m and n\n"); nbytes = fread(&(fch->m), sizeof(cmph_uint32), (size_t)1, f); nbytes = fread(&(fch->c), sizeof(double), (size_t)1, f); nbytes = fread(&(fch->b), sizeof(cmph_uint32), (size_t)1, f); nbytes = fread(&(fch->p1), sizeof(double), (size_t)1, f); nbytes = fread(&(fch->p2), sizeof(double), (size_t)1, f); fch->g = (cmph_uint32 *)malloc(sizeof(cmph_uint32)*fch->b); nbytes = fread(fch->g, fch->b*sizeof(cmph_uint32), (size_t)1, f); if (nbytes == 0 && ferror(f)) { fprintf(stderr, "ERROR: %s\n", strerror(errno)); return; } #ifdef DEBUG fprintf(stderr, "G: "); for (i = 0; i < fch->b; ++i) fprintf(stderr, "%u ", fch->g[i]); fprintf(stderr, "\n"); #endif return; } cmph_uint32 fch_search(cmph_t *mphf, const char *key, cmph_uint32 keylen) { fch_data_t *fch = mphf->data; cmph_uint32 h1 = hash(fch->h1, key, keylen) % fch->m; cmph_uint32 h2 = hash(fch->h2, key, keylen) % fch->m; h1 = mixh10h11h12 (fch->b, fch->p1, fch->p2, h1); //DEBUGP("key: %s h1: %u h2: %u g[h1]: %u\n", key, h1, h2, fch->g[h1]); return (h2 + fch->g[h1]) % fch->m; } void fch_destroy(cmph_t *mphf) { fch_data_t *data = (fch_data_t *)mphf->data; free(data->g); hash_state_destroy(data->h1); hash_state_destroy(data->h2); free(data); free(mphf); } /** \fn void fch_pack(cmph_t *mphf, void *packed_mphf); * \brief Support the ability to pack a perfect hash function into a preallocated contiguous memory space pointed by packed_mphf. * \param mphf pointer to the resulting mphf * \param packed_mphf pointer to the contiguous memory area used to store the resulting mphf. The size of packed_mphf must be at least cmph_packed_size() */ void fch_pack(cmph_t *mphf, void *packed_mphf) { fch_data_t *data = (fch_data_t *)mphf->data; cmph_uint8 * ptr = packed_mphf; // packing h1 type CMPH_HASH h1_type = hash_get_type(data->h1); CMPH_HASH h2_type; *((cmph_uint32 *) ptr) = h1_type; ptr += sizeof(cmph_uint32); // packing h1 hash_state_pack(data->h1, ptr); ptr += hash_state_packed_size(h1_type); // packing h2 type h2_type = hash_get_type(data->h2); *((cmph_uint32 *) ptr) = h2_type; ptr += sizeof(cmph_uint32); // packing h2 hash_state_pack(data->h2, ptr); ptr += hash_state_packed_size(h2_type); // packing m *((cmph_uint32 *) ptr) = data->m; ptr += sizeof(data->m); // packing b *((cmph_uint32 *) ptr) = data->b; ptr += sizeof(data->b); // packing p1 *((cmph_uint64 *)ptr) = (cmph_uint64)data->p1; ptr += sizeof(data->p1); // packing p2 *((cmph_uint64 *)ptr) = (cmph_uint64)data->p2; ptr += sizeof(data->p2); // packing g memcpy(ptr, data->g, sizeof(cmph_uint32)*(data->b)); } /** \fn cmph_uint32 fch_packed_size(cmph_t *mphf); * \brief Return the amount of space needed to pack mphf. * \param mphf pointer to a mphf * \return the size of the packed function or zero for failures */ cmph_uint32 fch_packed_size(cmph_t *mphf) { fch_data_t *data = (fch_data_t *)mphf->data; CMPH_HASH h1_type = hash_get_type(data->h1); CMPH_HASH h2_type = hash_get_type(data->h2); return (cmph_uint32)(sizeof(CMPH_ALGO) + hash_state_packed_size(h1_type) + hash_state_packed_size(h2_type) + 4*sizeof(cmph_uint32) + 2*sizeof(double) + sizeof(cmph_uint32)*(data->b)); } /** cmph_uint32 fch_search(void *packed_mphf, const char *key, cmph_uint32 keylen); * \brief Use the packed mphf to do a search. * \param packed_mphf pointer to the packed mphf * \param key key to be hashed * \param keylen key length in bytes * \return The mphf value */ cmph_uint32 fch_search_packed(void *packed_mphf, const char *key, cmph_uint32 keylen) { register cmph_uint8 *h1_ptr = packed_mphf; register CMPH_HASH h1_type = *((cmph_uint32 *)h1_ptr); register cmph_uint8 *h2_ptr; register CMPH_HASH h2_type; register cmph_uint32 *g_ptr; register cmph_uint32 m, b, h1, h2; register double p1, p2; h1_ptr += 4; h2_ptr = h1_ptr + hash_state_packed_size(h1_type); h2_type = *((cmph_uint32 *)h2_ptr); h2_ptr += 4; g_ptr = (cmph_uint32 *)(h2_ptr + hash_state_packed_size(h2_type)); m = *g_ptr++; b = *g_ptr++; p1 = (double)(*((cmph_uint64 *)g_ptr)); g_ptr += 2; p2 = (double)(*((cmph_uint64 *)g_ptr)); g_ptr += 2; h1 = hash_packed(h1_ptr, h1_type, key, keylen) % m; h2 = hash_packed(h2_ptr, h2_type, key, keylen) % m; h1 = mixh10h11h12 (b, p1, p2, h1); return (h2 + g_ptr[h1]) % m; }