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6178293a83
This will be used for typelib indexing. See README-CMPH-IMPORT.txt for more information.
338 lines
9.6 KiB
C
338 lines
9.6 KiB
C
#include<stdlib.h>
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#include<stdio.h>
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#include <assert.h>
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#include <string.h>
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#include <limits.h>
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#include "select_lookup_tables.h"
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#include "select.h"
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//#define DEBUG
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#include "debug.h"
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#ifndef STEP_SELECT_TABLE
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#define STEP_SELECT_TABLE 128
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#endif
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#ifndef NBITS_STEP_SELECT_TABLE
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#define NBITS_STEP_SELECT_TABLE 7
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#endif
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#ifndef MASK_STEP_SELECT_TABLE
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#define MASK_STEP_SELECT_TABLE 0x7f // 0x7f = 127
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#endif
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static inline void select_insert_0(cmph_uint32 * buffer)
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{
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(*buffer) >>= 1;
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};
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static inline void select_insert_1(cmph_uint32 * buffer)
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{
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(*buffer) >>= 1;
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(*buffer) |= 0x80000000;
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};
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void select_init(select_t * sel)
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{
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sel->n = 0;
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sel->m = 0;
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sel->bits_vec = 0;
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sel->select_table = 0;
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};
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cmph_uint32 select_get_space_usage(select_t * sel)
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{
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register cmph_uint32 nbits;
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register cmph_uint32 vec_size;
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register cmph_uint32 sel_table_size;
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register cmph_uint32 space_usage;
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nbits = sel->n + sel->m;
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vec_size = (nbits + 31) >> 5;
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sel_table_size = (sel->n >> NBITS_STEP_SELECT_TABLE) + 1; // (sel->n >> NBITS_STEP_SELECT_TABLE) = (sel->n/STEP_SELECT_TABLE)
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space_usage = 2 * sizeof(cmph_uint32) * 8; // n and m
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space_usage += vec_size * (cmph_uint32) sizeof(cmph_uint32) * 8;
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space_usage += sel_table_size * (cmph_uint32)sizeof(cmph_uint32) * 8;
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return space_usage;
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}
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void select_destroy(select_t * sel)
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{
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free(sel->bits_vec);
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free(sel->select_table);
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sel->bits_vec = 0;
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sel->select_table = 0;
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};
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static inline void select_generate_sel_table(select_t * sel)
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{
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register cmph_uint8 * bits_table = (cmph_uint8 *)sel->bits_vec;
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register cmph_uint32 part_sum, old_part_sum;
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register cmph_uint32 vec_idx, one_idx, sel_table_idx;
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part_sum = vec_idx = one_idx = sel_table_idx = 0;
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for(;;)
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{
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// FABIANO: Should'n it be one_idx >= sel->n
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if(one_idx >= sel->n)
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break;
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do
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{
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old_part_sum = part_sum;
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part_sum += rank_lookup_table[bits_table[vec_idx]];
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vec_idx++;
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} while (part_sum <= one_idx);
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sel->select_table[sel_table_idx] = select_lookup_table[bits_table[vec_idx - 1]][one_idx - old_part_sum] + ((vec_idx - 1) << 3); // ((vec_idx - 1) << 3) = ((vec_idx - 1) * 8)
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one_idx += STEP_SELECT_TABLE ;
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sel_table_idx++;
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};
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};
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void select_generate(select_t * sel, cmph_uint32 * keys_vec, cmph_uint32 n, cmph_uint32 m)
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{
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register cmph_uint32 i, j, idx;
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cmph_uint32 buffer = 0;
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register cmph_uint32 nbits;
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register cmph_uint32 vec_size;
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register cmph_uint32 sel_table_size;
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sel->n = n;
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sel->m = m; // n values in the range [0,m-1]
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nbits = sel->n + sel->m;
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vec_size = (nbits + 31) >> 5; // (nbits + 31) >> 5 = (nbits + 31)/32
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sel_table_size = (sel->n >> NBITS_STEP_SELECT_TABLE) + 1; // (sel->n >> NBITS_STEP_SELECT_TABLE) = (sel->n/STEP_SELECT_TABLE)
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if(sel->bits_vec)
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{
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free(sel->bits_vec);
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}
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sel->bits_vec = (cmph_uint32 *)calloc(vec_size, sizeof(cmph_uint32));
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if(sel->select_table)
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{
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free(sel->select_table);
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}
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sel->select_table = (cmph_uint32 *)calloc(sel_table_size, sizeof(cmph_uint32));
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idx = i = j = 0;
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for(;;)
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{
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while(keys_vec[j]==i)
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{
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select_insert_1(&buffer);
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idx++;
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if((idx & 0x1f) == 0 ) // (idx & 0x1f) = idx % 32
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sel->bits_vec[(idx >> 5) - 1] = buffer; // (idx >> 5) = idx/32
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j++;
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if(j == sel->n)
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goto loop_end;
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//assert(keys_vec[j] < keys_vec[j-1]);
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}
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if(i == sel->m)
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break;
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while(keys_vec[j] > i)
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{
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select_insert_0(&buffer);
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idx++;
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if((idx & 0x1f) == 0 ) // (idx & 0x1f) = idx % 32
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sel->bits_vec[(idx >> 5) - 1] = buffer; // (idx >> 5) = idx/32
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i++;
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};
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};
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loop_end:
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if((idx & 0x1f) != 0 ) // (idx & 0x1f) = idx % 32
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{
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buffer >>= 32 - (idx & 0x1f);
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sel->bits_vec[ (idx - 1) >> 5 ] = buffer;
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};
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select_generate_sel_table(sel);
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};
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static inline cmph_uint32 _select_query(cmph_uint8 * bits_table, cmph_uint32 * select_table, cmph_uint32 one_idx)
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{
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register cmph_uint32 vec_bit_idx ,vec_byte_idx;
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register cmph_uint32 part_sum, old_part_sum;
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vec_bit_idx = select_table[one_idx >> NBITS_STEP_SELECT_TABLE]; // one_idx >> NBITS_STEP_SELECT_TABLE = one_idx/STEP_SELECT_TABLE
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vec_byte_idx = vec_bit_idx >> 3; // vec_bit_idx / 8
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one_idx &= MASK_STEP_SELECT_TABLE; // one_idx %= STEP_SELECT_TABLE == one_idx &= MASK_STEP_SELECT_TABLE
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one_idx += rank_lookup_table[bits_table[vec_byte_idx] & ((1 << (vec_bit_idx & 0x7)) - 1)];
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part_sum = 0;
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do
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{
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old_part_sum = part_sum;
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part_sum += rank_lookup_table[bits_table[vec_byte_idx]];
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vec_byte_idx++;
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}while (part_sum <= one_idx);
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return select_lookup_table[bits_table[vec_byte_idx - 1]][one_idx - old_part_sum] + ((vec_byte_idx-1) << 3);
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}
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cmph_uint32 select_query(select_t * sel, cmph_uint32 one_idx)
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{
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return _select_query((cmph_uint8 *)sel->bits_vec, sel->select_table, one_idx);
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};
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static inline cmph_uint32 _select_next_query(cmph_uint8 * bits_table, cmph_uint32 vec_bit_idx)
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{
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register cmph_uint32 vec_byte_idx, one_idx;
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register cmph_uint32 part_sum, old_part_sum;
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vec_byte_idx = vec_bit_idx >> 3;
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one_idx = rank_lookup_table[bits_table[vec_byte_idx] & ((1U << (vec_bit_idx & 0x7)) - 1U)] + 1U;
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part_sum = 0;
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do
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{
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old_part_sum = part_sum;
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part_sum += rank_lookup_table[bits_table[vec_byte_idx]];
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vec_byte_idx++;
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}while (part_sum <= one_idx);
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return select_lookup_table[bits_table[(vec_byte_idx - 1)]][(one_idx - old_part_sum)] + ((vec_byte_idx - 1) << 3);
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}
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cmph_uint32 select_next_query(select_t * sel, cmph_uint32 vec_bit_idx)
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{
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return _select_next_query((cmph_uint8 *)sel->bits_vec, vec_bit_idx);
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};
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void select_dump(select_t *sel, char **buf, cmph_uint32 *buflen)
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{
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register cmph_uint32 nbits = sel->n + sel->m;
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register cmph_uint32 vec_size = ((nbits + 31) >> 5) * (cmph_uint32)sizeof(cmph_uint32); // (nbits + 31) >> 5 = (nbits + 31)/32
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register cmph_uint32 sel_table_size = ((sel->n >> NBITS_STEP_SELECT_TABLE) + 1) * (cmph_uint32)sizeof(cmph_uint32); // (sel->n >> NBITS_STEP_SELECT_TABLE) = (sel->n/STEP_SELECT_TABLE)
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register cmph_uint32 pos = 0;
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*buflen = 2*(cmph_uint32)sizeof(cmph_uint32) + vec_size + sel_table_size;
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*buf = (char *)calloc(*buflen, sizeof(char));
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if (!*buf)
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{
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*buflen = UINT_MAX;
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return;
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}
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memcpy(*buf, &(sel->n), sizeof(cmph_uint32));
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pos += (cmph_uint32)sizeof(cmph_uint32);
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memcpy(*buf + pos, &(sel->m), sizeof(cmph_uint32));
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pos += (cmph_uint32)sizeof(cmph_uint32);
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memcpy(*buf + pos, sel->bits_vec, vec_size);
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pos += vec_size;
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memcpy(*buf + pos, sel->select_table, sel_table_size);
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DEBUGP("Dumped select structure with size %u bytes\n", *buflen);
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}
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void select_load(select_t * sel, const char *buf, cmph_uint32 buflen)
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{
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register cmph_uint32 pos = 0;
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register cmph_uint32 nbits = 0;
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register cmph_uint32 vec_size = 0;
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register cmph_uint32 sel_table_size = 0;
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memcpy(&(sel->n), buf, sizeof(cmph_uint32));
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pos += (cmph_uint32)sizeof(cmph_uint32);
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memcpy(&(sel->m), buf + pos, sizeof(cmph_uint32));
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pos += (cmph_uint32)sizeof(cmph_uint32);
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nbits = sel->n + sel->m;
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vec_size = ((nbits + 31) >> 5) * (cmph_uint32)sizeof(cmph_uint32); // (nbits + 31) >> 5 = (nbits + 31)/32
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sel_table_size = ((sel->n >> NBITS_STEP_SELECT_TABLE) + 1) * (cmph_uint32)sizeof(cmph_uint32); // (sel->n >> NBITS_STEP_SELECT_TABLE) = (sel->n/STEP_SELECT_TABLE)
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if(sel->bits_vec)
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{
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free(sel->bits_vec);
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}
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sel->bits_vec = (cmph_uint32 *)calloc(vec_size/sizeof(cmph_uint32), sizeof(cmph_uint32));
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if(sel->select_table)
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{
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free(sel->select_table);
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}
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sel->select_table = (cmph_uint32 *)calloc(sel_table_size/sizeof(cmph_uint32), sizeof(cmph_uint32));
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memcpy(sel->bits_vec, buf + pos, vec_size);
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pos += vec_size;
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memcpy(sel->select_table, buf + pos, sel_table_size);
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DEBUGP("Loaded select structure with size %u bytes\n", buflen);
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}
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/** \fn void select_pack(select_t *sel, void *sel_packed);
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* \brief Support the ability to pack a select structure function into a preallocated contiguous memory space pointed by sel_packed.
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* \param sel points to the select structure
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* \param sel_packed pointer to the contiguous memory area used to store the select structure. The size of sel_packed must be at least @see select_packed_size
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*/
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void select_pack(select_t *sel, void *sel_packed)
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{
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if (sel && sel_packed)
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{
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char *buf = NULL;
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cmph_uint32 buflen = 0;
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select_dump(sel, &buf, &buflen);
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memcpy(sel_packed, buf, buflen);
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free(buf);
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}
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}
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/** \fn cmph_uint32 select_packed_size(select_t *sel);
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* \brief Return the amount of space needed to pack a select structure.
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* \return the size of the packed select structure or zero for failures
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*/
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cmph_uint32 select_packed_size(select_t *sel)
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{
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register cmph_uint32 nbits = sel->n + sel->m;
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register cmph_uint32 vec_size = ((nbits + 31) >> 5) * (cmph_uint32)sizeof(cmph_uint32); // (nbits + 31) >> 5 = (nbits + 31)/32
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register cmph_uint32 sel_table_size = ((sel->n >> NBITS_STEP_SELECT_TABLE) + 1) * (cmph_uint32)sizeof(cmph_uint32); // (sel->n >> NBITS_STEP_SELECT_TABLE) = (sel->n/STEP_SELECT_TABLE)
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return 2*(cmph_uint32)sizeof(cmph_uint32) + vec_size + sel_table_size;
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}
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cmph_uint32 select_query_packed(void * sel_packed, cmph_uint32 one_idx)
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{
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register cmph_uint32 *ptr = (cmph_uint32 *)sel_packed;
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register cmph_uint32 n = *ptr++;
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register cmph_uint32 m = *ptr++;
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register cmph_uint32 nbits = n + m;
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register cmph_uint32 vec_size = (nbits + 31) >> 5; // (nbits + 31) >> 5 = (nbits + 31)/32
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register cmph_uint8 * bits_vec = (cmph_uint8 *)ptr;
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register cmph_uint32 * select_table = ptr + vec_size;
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return _select_query(bits_vec, select_table, one_idx);
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}
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cmph_uint32 select_next_query_packed(void * sel_packed, cmph_uint32 vec_bit_idx)
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{
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register cmph_uint8 * bits_vec = (cmph_uint8 *)sel_packed;
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bits_vec += 8; // skipping n and m
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return _select_next_query(bits_vec, vec_bit_idx);
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}
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