perl-Bio-LITE-Taxonomy/perl-Bio-LITE-Taxonomy.spec

#
# spec file for package perl-Bio-LITE-Taxonomy
#
# Copyright (c) 2024 SUSE LLC
#
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# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
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# published by the Open Source Initiative.

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%define cpan_name Bio-LITE-Taxonomy
Name:           perl-Bio-LITE-Taxonomy
Version:        0.70.0
Release:        0
# 0.07 -> normalize -> 0.70.0
%define cpan_version 0.07
License:        Artistic-1.0 OR GPL-1.0-or-later
Summary:        Lightweight and efficient taxonomic tree manager
URL:            https://metacpan.org/release/%{cpan_name}
Source0:        https://cpan.metacpan.org/authors/id/M/MO/MOTIF/%{cpan_name}-%{cpan_version}.tar.gz
Source100:      README.md
BuildArch:      noarch
BuildRequires:  perl
BuildRequires:  perl-macros
BuildRequires:  perl(Test::More) >= 0.87
Requires:       perl(Test::More) >= 0.87
Provides:       perl(Bio::LITE::Taxonomy) = %{version}
%undefine       __perllib_provides
%{perl_requires}

%description
This module provides easy and efficient access to different taxonomies
(NCBI and RDP) with minimal dependencies and without intermediate
databases. This module should be used through specific taxonomic interfaces
(e.g. Bio::LITE::Taxonomy::NCBI or Bio::LITE::Taxonomy::RDP).

This module is not part of the Bioperl bundle. For Bioperl alternatives,
see the "SEE ALSO" section of this document. If you are dealing with big
datasets or you don't need the rest of the Bioperl bundle to process
taxonomic queries this module is for you.

These modules are designed with performance in mind. The trees are stored
in memory (as plain hashes). The GI to Taxid mappings provided by
Bio::LITE::Taxonomy::NCBI::Gi2taxid are very efficient. It also supports
both NCBI and RDP taxonomies following the same interface.

%prep
%autosetup  -n %{cpan_name}-%{cpan_version}

find . -type f ! -path "*/t/*" ! -name "*.pl" ! -path "*/bin/*" ! -path "*/script/*" ! -path "*/scripts/*" ! -name "configure" -print0 | xargs -0 chmod 644

%build
perl Makefile.PL INSTALLDIRS=vendor
%make_build

%check
make test

%install
%perl_make_install
%perl_process_packlist
%perl_gen_filelist

%files -f %{name}.files
%doc Changes README

%changelog