Accepting request 129021 from home:computersalat:devel:perl
update to 1.6.901 OBS-URL: https://build.opensuse.org/request/show/129021 OBS-URL: https://build.opensuse.org/package/show/devel:languages:perl/perl-BioPerl?expand=0&rev=4
This commit is contained in:
Christian Wittmer
committed by
Git OBS Bridge
Git OBS Bridge
parent
a69a704fdf
commit
5f59bd50c1
@@ -1,7 +1,7 @@
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#
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# spec file for package perl-BioPerl (Version 1.6.1)
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# spec file for package perl-BioPerl
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#
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# Copyright (c) 2010 SUSE LINUX Products GmbH, Nuernberg, Germany.
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# Copyright (c) 2012 SUSE LINUX Products GmbH, Nuernberg, Germany.
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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@@ -15,34 +15,35 @@
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# Please submit bugfixes or comments via http://bugs.opensuse.org/
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#
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# norootforbuild
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%bcond_with test
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Name: perl-BioPerl
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%define cpan_name BioPerl
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Summary: Perl Modules for Biology
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Version: 1.6.1
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Release: 1
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License: GPL+ or Artistic
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License: GPL-3.0 or Artistic-1.0
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Group: Development/Libraries/Perl
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Version: 1.6.901
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Release: 0
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Url: http://search.cpan.org/dist/BioPerl/
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#Source: http://www.cpan.org/modules/by-module/BioPerl/BioPerl-%{version}.tar.gz
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Source: %{cpan_name}-%{version}.tar.bz2
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Patch0: %{cpan_name}-1.6.1-Build.patch
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Patch0: deps.patch
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BuildArch: noarch
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BuildRoot: %{_tmppath}/%{name}-%{version}-build
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%{perl_requires}
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BuildRequires: perl
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BuildRequires: perl(Module::Build)
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BuildRequires: perl-macros
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BuildRequires: perl(Test::More)
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BuildRequires: perl(Module::Build)
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BuildRequires: perl(Test::Harness) >= 2.62
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BuildRequires: perl(Test::More)
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#
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BuildRequires: perl(Data::Stag) >= 0.11
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BuildRequires: perl(ExtUtils::Manifest) >= 1.52
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BuildRequires: perl(IO::String)
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BuildRequires: perl(Scalar::Util)
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# FIXME: not mentioned in Build.PL
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##
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BuildRequires: perl(URI::Escape)
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# recommended packages
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%if %{with test}
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@@ -56,6 +57,8 @@ BuildRequires: perl(Array::Compare)
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# we actually need 1.01 of Class::AutoClass, but unfortunately it is versioned as 1.0
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BuildRequires: perl(Clone)
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BuildRequires: perl(Convert::Binary::C)
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BuildRequires: perl(Error)
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BuildRequires: perl(GD)
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BuildRequires: perl(Graph)
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BuildRequires: perl(GraphViz)
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BuildRequires: perl(HTML::Entities)
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@@ -66,12 +69,13 @@ BuildRequires: perl(List::MoreUtils)
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BuildRequires: perl(Math::Random)
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BuildRequires: perl(PostScript::TextBlock)
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BuildRequires: perl(SOAP::Lite)
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BuildRequires: perl(Set::Scalar)
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BuildRequires: perl(Spreadsheet::ParseExcel)
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BuildRequires: perl(Spreadsheet::WriteExcel)
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BuildRequires: perl(Storable) >= 2.05
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BuildRequires: perl(SVG) >= 2.26
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BuildRequires: perl(SVG::Graph) >= 0.01
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BuildRequires: perl(Set::Scalar)
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BuildRequires: perl(Sort::Naturally)
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BuildRequires: perl(Spreadsheet::ParseExcel)
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#BuildRequires: perl(Spreadsheet::WriteExcel)
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BuildRequires: perl(Storable) >= 2.05
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BuildRequires: perl(Text::ParseWords)
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BuildRequires: perl(XML::DOM::XPath) >= 0.13
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BuildRequires: perl(XML::Parser)
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@@ -81,6 +85,7 @@ BuildRequires: perl(XML::SAX::Writer)
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BuildRequires: perl(XML::Simple)
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BuildRequires: perl(XML::Twig)
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BuildRequires: perl(XML::Writer) >= 0.4
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BuildRequires: perl(YAML)
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%endif
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#
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Requires: perl(Data::Stag) >= 0.11
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@@ -100,6 +105,8 @@ Recommends: perl(Bio::ASN1::EntrezGene)
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# we actually need 1.01 of Class::AutoClass, but unfortunately it is versioned as 1.0
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Recommends: perl(Clone)
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Recommends: perl(Convert::Binary::C)
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Recommends: perl(Error)
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Recommends: perl(GD)
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Recommends: perl(Graph)
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Recommends: perl(GraphViz)
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Recommends: perl(HTML::Entities)
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@@ -111,6 +118,7 @@ Recommends: perl(Math::Random)
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Recommends: perl(PostScript::TextBlock)
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Recommends: perl(SOAP::Lite)
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Recommends: perl(Set::Scalar)
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Recommends: perl(Sort::Naturally)
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Recommends: perl(Spreadsheet::ParseExcel)
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Recommends: perl(Spreadsheet::WriteExcel)
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Recommends: perl(Storable) >= 2.05
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@@ -125,6 +133,7 @@ Recommends: perl(XML::SAX::Writer)
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Recommends: perl(XML::Simple)
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Recommends: perl(XML::Twig)
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Recommends: perl(XML::Writer) >= 0.4
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Recommends: perl(YAML)
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%description
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BioPerl is the product of a community effort to produce Perl code which is
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@@ -136,21 +145,9 @@ Annotation and SeqFeature objects and databases, Blast objects can be
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converted to Alignment objects, and so on. This means that the objects
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provide a coordinated and extensible framework to do computational biology.
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Authors:
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--------
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Georg Fuellen
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Richard Resnick
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Steven E. Brenner
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Chris Dagdigian
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Steve Chervitz
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Ewan Birney
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James Gilbert
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Elia Stupka
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and others.
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%prep
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%setup -q -n %{cpan_name}-%{version}
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%patch0 -p1
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%patch0
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## some rpmlint stuff :(
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# script-without-shebang
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find ./Bio -name "*.pm" -exec %{__chmod} 0644 {} \;
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