diff --git a/BioPerl-1.007002.tar.gz b/BioPerl-1.007002.tar.gz deleted file mode 100644 index 0d04afd..0000000 --- a/BioPerl-1.007002.tar.gz +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:17aa3aaab2f381bbcaffdc370002eaf28f2c341b538068d6586b2276a76464a1 -size 12362741 diff --git a/BioPerl-1.7.5.tar.gz b/BioPerl-1.7.5.tar.gz new file mode 100644 index 0000000..cf8148c --- /dev/null +++ b/BioPerl-1.7.5.tar.gz @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4a96472004e35e11eafd1fa3b3966f1d18622de3afde3e2fa6765a2dbedb3a0a +size 7512326 diff --git a/perl-BioPerl.changes b/perl-BioPerl.changes index fa39833..f54fff2 100644 --- a/perl-BioPerl.changes +++ b/perl-BioPerl.changes @@ -1,3 +1,9 @@ +------------------------------------------------------------------- +Wed Apr 3 06:45:03 UTC 2019 - Stephan Kulow + +- updated to 1.7.5 + see /usr/share/doc/packages/perl-BioPerl/Changes + ------------------------------------------------------------------- Thu Sep 27 16:11:06 UTC 2018 - Christian Wittmer diff --git a/perl-BioPerl.spec b/perl-BioPerl.spec index 148bf8c..c11ce62 100644 --- a/perl-BioPerl.spec +++ b/perl-BioPerl.spec @@ -1,7 +1,7 @@ # # spec file for package perl-BioPerl # -# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany. +# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed @@ -17,65 +17,81 @@ Name: perl-BioPerl -Version: 1.007002 +Version: 1.7.5 Release: 0 %define cpan_name BioPerl -Summary: Perl Modules for Biology -License: GPL-2.0-or-later OR Artistic-1.0 +Summary: Perl modules for biology +License: Artistic-1.0 OR GPL-1.0-or-later Group: Development/Libraries/Perl -Url: http://search.cpan.org/dist/BioPerl/ -Source0: https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/%{cpan_name}-%{version}.tar.gz +Url: https://metacpan.org/release/%{cpan_name} +Source0: https://cpan.metacpan.org/authors/id/C/CD/CDRAUG/%{cpan_name}-%{version}.tar.gz Source1: cpanspec.yml BuildArch: noarch BuildRoot: %{_tmppath}/%{name}-%{version}-build BuildRequires: perl BuildRequires: perl-macros -BuildRequires: perl(CPAN) >= 1.81 -BuildRequires: perl(Data::Stag) >= 0.11 -BuildRequires: perl(ExtUtils::Manifest) >= 1.52 +BuildRequires: perl(DBI) +BuildRequires: perl(Data::Stag) +BuildRequires: perl(Error) +BuildRequires: perl(GD) +BuildRequires: perl(Graph::Directed) +BuildRequires: perl(HTTP::Request::Common) +BuildRequires: perl(HTTP::Response) +BuildRequires: perl(IO::Scalar) BuildRequires: perl(IO::String) -BuildRequires: perl(Module::Build) >= 0.420000 -BuildRequires: perl(Test::Harness) >= 2.62 +BuildRequires: perl(IPC::Run) +BuildRequires: perl(LWP::UserAgent) +BuildRequires: perl(List::MoreUtils) +BuildRequires: perl(Module::Build) +BuildRequires: perl(Set::Scalar) +BuildRequires: perl(Test::Memory::Cycle) BuildRequires: perl(Test::Most) -BuildRequires: perl(URI::Escape) -Requires: perl(Data::Stag) >= 0.11 -Requires: perl(ExtUtils::Manifest) >= 1.52 +BuildRequires: perl(Test::RequiresInternet) +BuildRequires: perl(Test::Weaken) +BuildRequires: perl(URI) +BuildRequires: perl(XML::DOM) +BuildRequires: perl(XML::DOM::XPath) +BuildRequires: perl(XML::LibXML) +BuildRequires: perl(XML::LibXML::Reader) +BuildRequires: perl(XML::Parser::PerlSAX) +BuildRequires: perl(XML::SAX) +BuildRequires: perl(XML::SAX::Base) +BuildRequires: perl(XML::SAX::Writer) +BuildRequires: perl(XML::Twig) +BuildRequires: perl(XML::Writer) +BuildRequires: perl(YAML) +BuildRequires: perl(parent) +BuildRequires: perl(version) +Requires: perl(DBI) +Requires: perl(Data::Stag) +Requires: perl(Error) +Requires: perl(GD) +Requires: perl(Graph::Directed) +Requires: perl(HTTP::Request::Common) +Requires: perl(HTTP::Response) +Requires: perl(IO::Scalar) Requires: perl(IO::String) -Recommends: perl(Algorithm::Munkres) -Recommends: perl(Array::Compare) -Recommends: perl(Bio::Phylo) -Recommends: perl(CGI) -Recommends: perl(Clone) -Recommends: perl(Convert::Binary::C) -Recommends: perl(Error) -Recommends: perl(GD) -Recommends: perl(Graph) >= 0.5 -Recommends: perl(GraphViz) -Recommends: perl(HTML::Entities) -Recommends: perl(HTML::HeadParser) >= 3 -Recommends: perl(HTML::TableExtract) -Recommends: perl(HTTP::Request::Common) -Recommends: perl(Inline::C) >= 0.67 -Recommends: perl(IO::Scalar) -Recommends: perl(List::MoreUtils) -Recommends: perl(LWP::UserAgent) -Recommends: perl(PostScript::TextBlock) -Recommends: perl(Set::Scalar) -Recommends: perl(Sort::Naturally) -Recommends: perl(Spreadsheet::ParseExcel) -Recommends: perl(SVG) >= 2.26 -Recommends: perl(SVG::Graph) >= 0.01 -Recommends: perl(XML::DOM) -Recommends: perl(XML::DOM::XPath) -Recommends: perl(XML::LibXML) -Recommends: perl(XML::Parser) -Recommends: perl(XML::Parser::PerlSAX) -Recommends: perl(XML::SAX) >= 0.15 -Recommends: perl(XML::SAX::Writer) -Recommends: perl(XML::Simple) -Recommends: perl(XML::Twig) -Recommends: perl(XML::Writer) >= 0.4 -Recommends: perl(YAML) +Requires: perl(IPC::Run) +Requires: perl(LWP::UserAgent) +Requires: perl(List::MoreUtils) +Requires: perl(Module::Build) +Requires: perl(Set::Scalar) +Requires: perl(Test::Most) +Requires: perl(Test::RequiresInternet) +Requires: perl(URI) +Requires: perl(XML::DOM) +Requires: perl(XML::DOM::XPath) +Requires: perl(XML::LibXML) +Requires: perl(XML::LibXML::Reader) +Requires: perl(XML::Parser::PerlSAX) +Requires: perl(XML::SAX) +Requires: perl(XML::SAX::Base) +Requires: perl(XML::SAX::Writer) +Requires: perl(XML::Twig) +Requires: perl(XML::Writer) +Requires: perl(YAML) +Requires: perl(parent) +Requires: perl(version) %{perl_requires} %description @@ -106,28 +122,22 @@ and contribute your own if possible. %prep %setup -q -n %{cpan_name}-%{version} find . -type f ! -name \*.pl -print0 | xargs -0 chmod 644 -# fix for boo#1089992 -for i in $(grep -R "/usr/local/bin/perl" * | awk -F':' '{print $1}'); do - perl -p -i -e 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' "${i}" -done -# rpmlint -perl -p -i -e 's|\r\n|\n|' ./ide/bioperl-mode/etc/images/bpmode-tool-dis.xpm -perl -p -i -e 's|\r\n|\n|' ./ide/bioperl-mode/etc/images/bpmode-tool.xpm %build -%{__perl} Build.PL installdirs=vendor -./Build build flags=%{?_smp_mflags} +perl Makefile.PL INSTALLDIRS=vendor +make %{?_smp_mflags} %check -./Build test +make test %install -./Build install destdir=%{buildroot} create_packlist=0 +%perl_make_install +%perl_process_packlist %perl_gen_filelist %files -f %{name}.files %defattr(-,root,root,755) -%doc AUTHORS Bio BUGS Changes deobfuscator DEPENDENCIES DEPRECATED examples ide maintenance models README.md scripts travis_scripts +%doc AUTHORS Changes examples HACKING.md README.md %license LICENSE %changelog