110 Commits

Author SHA256 Message Date
Detlef Steuer
c9566cf8be - Upstream replaced the tar.xz file due to a packaging error
No other changes.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=153
2025-10-31 22:01:35 +00:00
Detlef Steuer
595f7b6134 - CHANGES IN R 4.5.2:
UTILITIES:
    • R CMD check now handles archives with extension .tar or .tar.zstd
      (where zstd compression is supported by the R build).
  BUG FIXES:
    • t.test(c(1:3, Inf)) and similar no longer produce an error but
      return a (still not so useful) "htest" result, fixing PR#18901,
      thanks to Jesse Alderliesten.
    • attr(., "tsp") <- val now uses getOption("ts.eps") instead of
      hardwired 1e-5; consequently, ts(.., ts.eps=*) now passes ts.eps
      to the "tsp" setting C code; both fixing a long-standing ‘FIXME’.
    • insertSource() now ignores the internal .packageName object,
      avoiding a superfluous message.
    • In static HTML help, links to vignette files from the default
      doc/index.html page now also work for packages not installed in
      the default .Library, thanks to a report by Patrice Kiener.
    • fixInNamespace("<S3method>") failed to update the S3 methods
      table when the generic was not on the search path.
    • In plain-text help (Rd2txt), an initial newline from an Rd inline
      \eqn no longer breaks the paragraph.
    • hist(*, log = "x") now works without a warning, thanks to Martin
      Smith's PR#18921.
    • Subassigning "POSIXlt", i.e., <tdat>[i] <- val and <tdat>[[i]] <-
      val now rebalance as they should, thanks to Mikael Jagan's
      PR#18919.
    • <POSIXlt>[*] (re-)setting "balanced", fixing PR#18681 comment #7,
      thanks to Mikael Jagan.
    • All four of {col,row}{Sums,Means}(Z, na.rm=TRUE) now correctly
      work with complex Z where is.na(Re(Z)) differs from is.na(Im(Z)),
      fixing PR#18942, unearthed by Dirk Eddelbuettel.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=152
2025-10-31 13:30:31 +00:00
Detlef Steuer
cc9b510b0f - CHANGES IN R 4.5.1:
NEW FEATURES:
    • The internal method of unzip() now follows unzip 6.00 in how it
      handles extracted file paths which contain "../".  With thanks to
      Ivan Krylov.
  INSTALLATION:
    • Standalone nmath can be built with early-2025 versions of
      clang-based compilers such as LLVM clang 20, Apple clang 17 and
      Intel icx 2025.0.
    • Tcl/Tk 9 can be used to build package tcltk: this has become the
      default in some Linux distributions.  *N.B.* several third-party
      packages currently require Tcl/Tk 8 or even 8.6 without declaring
      so.
  BUG FIXES:
    • Java detection in javareconf could not detect libjvm.* in the
      zero variant of the JDK (PR#18884).  All valid variants as of JDK
      24u are now supported.
    • factanal(.., rotation=*) now correctly updates rotmat, fixing
      PR#18886.
    • dnbinom(<large>, <muchlarger>, ..) now is 0 correctly, instead of
      NaN or Inf sometimes.
    • dbinom(<large>, n=Inf, ..) is 0 now correctly, instead of NaN
      which also fixes many dnbinom() cases, notably those mentioned in
      PR#16727 comment #5.
    • Fixing C level “binomial deviance” bd0() for extreme arguments
      (preventing under-/overflow) solves more PR#16727 cases and also
      prevents some full accuracy loss in such cases for dbinom(),
      dnbinom(), and via dbinom_raw() potentially dgeom(), dhyper(),
      dbeta(), and df().
    • signif(1.**e308, digits) no longer truncates unnecessarily (but

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=150
2025-06-13 11:00:39 +00:00
Detlef Steuer
b5189372ae - CHANGES IN R 4.5.0:
NEW FEATURES:
    • as.integer(rl) and hence as.raw(rl) now work for a list of raw(1)
      elements, as proposed by Michael Chirico's PR#18696.
    • graphics' grid() gains optional argument nintLog.
    • New functions check_package_urls() and check_package_dois() in
      package tools for checking URLs and DOIs in package sources.
    • New head() and tail() methods for class "ts" time series,
      proposed by Spencer Graves on R-devel.
    • New qr.influence() function, a “bare bones” interface to the
      lm.influence() leave-one-out diagnostics computations; wished for
      in PR#18739.
    • Package citation() results auto-generated from the package
      metadata now also provide package DOIs for CRAN and Bioconductor
      packages.
    • New function grepv() identical to grep() except for the default
      value = TRUE.
    • methods(<pkg>:::<genfun>) now does report methods when neither
      the generic nor the methods have been exported.
    • pdf() gains an author argument to set the corresponding metadata
      field, and logical arguments timestamp and producer to optionally
      omit the respective metadata.  (Thanks to Edzer Pebesma.)
    • grDevices::glyphInfo() gains a rot argument to allow per-glyph
      rotation.  (Thanks to Daniel Sabanes Bove.)
    • Package tools now exports functions CRAN_current_db(),
      CRAN_aliases_db(), CRAN_rdxrefs_db(), CRAN_archive_db(), and
      CRAN_authors_db().
    • Package tools now exports functions R() and
      parse_URI_reference().
    • Package tools now exports functions base_aliases_db() and

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=148
2025-04-11 12:22:22 +00:00
Detlef Steuer
d10712f328 - CHANGES IN R 4.4.3:
INSTALLATION:
    * R can be installed using C23 (for example with -std=gnu23 or
      -std=gnu2x) with recent compilers including gcc 12-14, Apple
      clang 15-16, LLVM clang 17-20 and Intel icx 2024.2.
      It can be installed with the upcoming (at the time of writing)
      gcc 15, which defaults to C23.
  C-LEVEL FACILITIES:
    * The functions R_strtod and R_atof now allow hexadecimal constants
      without an exponent, for compatibility with their C99 versions
      (PR#18805).
  UTILITIES:
    * R CMD build and R CMD check now allow reference output for demo
      scripts (demo/<demo>.Rout.save files) to be shipped with the
      package, as proposed by Torsten Hothorn in PR#18816.
  BUG FIXES:
    * kappa(A, exact=TRUE) for singular A returns Inf more generally,
      fixing PR#18817 reported by Mikael Jagan.
    * Fixed URLs of the sun spots (sunspot.month etc) data sets and
      mention future changes due to recalibration.
    * The parser now accepts hexadecimal constants with a decimal point
      without an exponent (taken as p0) as documented in
      ?NumericConstants (PR#18819).
    * rbind() now works correctly when inputs include a raw vector and
      a logical, integer or double vector - previously the inclusion of
      the latter was garbled.
    * smooth.spline() checks validity of its arguments df.offset and
      penalty: it could segfault if they were NULL.
    * isGeneric(<primitive>, fdef=*, getName=TRUE) now also returns the
      name instead of just TRUE, fixing PR#18829 reported by Mikael

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=146
2025-03-01 21:18:33 +00:00
Detlef Steuer
670ec5ac5c - CHANGES IN R 4.4.2:
C-LEVEL FACILITIES:
    * The S-compatibility macros F77_COM and F77_COMDECL defined in
      header R_ext/RS.h are deprecated and will be removed shortly.  We
      could find no record of their use.
  BUG FIXES:
    * Mathlib function lgammacor(x) no longer warns about underflow to
      zero for large x.
    * Text widths and heights were incorrectly reported by the Quartz
      device if the drawing context didn't exist yet (typically when
      drawing off-screen to a window that is yet to appear, see
      PR#18591).
    * The Quartz device could segfault in cases where paths with spaces
      are used in the new glyph drawing API.  Thanks to Tomek
      Gieorgijewski (PR#18758).
    * On macOS in R CRAN builds, it is again possible to read
      little-endian UTF-16 text with a BOM from a connection using
      encoding="UTF-16".  Users building R from source should avoid
      using the system libiconv in macOS 14.1 and later.
    * methods' internal .requirePackage() now re-enables primitive
      method dispatch when needed; thanks to Ivan Krylov for
      demystifying CRAN package check failures on the R-devel mailing
      list.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=144
2024-10-31 11:11:36 +00:00
Detlef Steuer
c594d580e7 - CHANGES IN R 4.4.1:
C-LEVEL FACILITIES:
    * Functions R_atof and R_strtod declared in header R_ext/Utils.h
      are now documented in 'Writing R Extensions' and so formally part
      of the API.
    * The non-API entry points Rf_setSVector, Rf_StringFalse,
      Rf_StringTrue and Rf_isBlankString have been added to those
      reported by R CMD check.
    * The new function Rf_allocLang is now available. This provides an
      alternative to the idiom of calling Rf_allocList followed by
      SET_TYPEOF.
  UTILITIES:
    * R CMD check now reports as warnings what gfortran calls 'Fortran
      2018 deleted features', all of which have long been marked as
      'obsolescent' and some of which were deleted in Fortran 2008 or
      earlier.  Fortran compilers are no longer required to support
      these.
  BUG FIXES:
    * as.numeric(), scan(), type.convert() and other places which use
      the internal C function R_strtod now require a _non-empty_ digit
      sequence in a decimal or binary exponent.  This aligns with the
      C/POSIX standard for strtod and with ?NumericConstants.
    * as.data.frame(m, make.names=NA) now works correctly for a matrix
      m with NA's in row names.
    * The error message from <POSIXlt>[["hour"]] and similar now
      mentions *[[, "hour"]], as wished for in PR#17409 and proposed by
      Michael Chirico.
    * qbinom() and potentially qpois(), qnbinom(), no longer sometimes
      fail accurate inversion (of pbinom(), etc), thanks to Christopher
      Chang's report and patch in PR#18711.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=142
2024-06-14 08:22:07 +00:00
Detlef Steuer
5ae9c72741 - CHANGES IN R 4.4.0:
SIGNIFICANT USER-VISIBLE CHANGES:
    * Startup banners, R --version, sessionInfo() and R CMD check no
      longer report (64-bit) as part of the platform as this is almost
      universal - the increasingly rare 32-bit platforms will still
      report (32-bit).
      On Windows, ditto for window titles.
    * is.atomic(NULL) now returns FALSE, as NULL is not an atomic
      vector.  Strict back-compatibility would replace is.atomic(foo)
      by (is.null(foo) || is.atomic(foo)) but should happen only
      sparingly.
  NEW FEATURES:
    * The confint() methods for "glm" and "nls" objects have been
      copied to the stats package.  Previously, they were stubs which
      called versions in package MASS. The MASS namespace is no longer
      loaded if you invoke (say) confint(glmfit).  Further, the "glm"
      method for profile() and the plot() and pairs() methods for class
      "profile" have been copied from MASS to stats.  (profile.nls()
      and plot.profile.nls() were already in stats.)
    * The confint() and profile methods for "glm" objects have gained a
      possibility to do profiling based on the Rao Score statistic in
      addition to the default Likelihood Ratio. This is controlled by a
      new test = argument.
    * The pairs() method for "profile" objects has been extended with a
      which = argument to allow plotting only a subset of the
      parameters.
    * The "glm" method for anova() computes test statistics and
      p-values by default, using a chi-squared test or an F test
      depending on whether the dispersion is fixed or free.  Test
      statistics can be suppressed by giving argument test a false

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=140
2024-04-24 10:50:57 +00:00
Detlef Steuer
750ddbff65 - CHANGES IN R 4.3.3:
NEW FEATURES:
    * iconv() now fixes up variant encoding names such as "utf8"
      case-insensitively.
  DEPRECATED AND DEFUNCT:
    * The legacy encoding = "MacRoman" is deprecated in pdf() and
      postscript(): support was incomplete in earlier versions of R.
  BUG FIXES:
    * Arguments are now properly forwarded to methods on S4 generics
      with ... in the middle of their formal arguments. This was broken
      for the case when a method introduced an argument but did not
      include ... in its own formals. Thanks to Herv'e Pag`es for the
      report PR#18538.
    * Some invalid file arguments to pictex(), postscript() and xfig()
      opened a file called NA rather than throw an error.  These
      included postscript(NULL) (which some people expected to work
      like pdf(NULL)).
    * Passing filename = NA to svg(), cairo_pdf(), cairo_ps() or the
      Cairo-based bitmap devices opened a file called NA: it now throws
      an error.
    * quartz(file = NA) opened a file called NA, including when used as
      a Quartz-based bitmap device.  It now gives an error.
    * rank(<long vector>) now works, fixing PR#18617, thanks to Ilia
      Kats.
    * seq.int() did not adequately check its length.out argument.
    * match(<POSIXct>, .) is correct again for differing time zones,
      ditto for "POSIXlt", fixing PR#18618 reported by Bastian Klein.
    * drop.terms(*, dropx = <0-length>) now works, fixing PR#18563 as
      proposed by Mikael Jagan.
    * drop.terms(*) keeps + offset(.) terms when it should, PR#18565,

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=138
2024-02-29 09:50:57 +00:00
Detlef Steuer
11c2a08032 - CHANGES IN R 4.3.2:
NEW FEATURES:
    * The default initialization of the "repos" option from the
      repositories file at startup can be skipped by setting
      environment variable R_REPOSITORIES to NULL such that
      getOption("repos") is empty if not set elsewhere.
    * qr.X() is now an implicit S4 generic in methods.
    * iconv(to = "ASCII//TRANSLIT") is emulated using substitution on
      platforms which do not support it (notably Alpine Linux).  This
      should give a human-readable conversion in ASCII on all platforms
      (rather than NA_character_).
    * trans3d() gains options continuous and verbose addressing the
      problem of possible "wrap around" when projecting too long
      curves, as reported by Achim Zeileis in PR#18537.
    * tools::showNonASCII() has been rewritten to work better on macOS
      14 (which has a changed implementation of iconv()).
    * tiff(type = "quartz") (the default on macOS) now warns if
      compression is specified: it continues to be ignored.
  INSTALLATION on a UNIX-ALIKE:
    * There is some support for building with Intel's LLVM-based
      compilers on x86_64 Linux, such as (C) icx, (C++) ipcx and
      (Fortran) ifx from oneAPI 2023.x.y.
    * There is support for using LLVM's flang-new as the Fortran
      compiler from LLVM 16.0.x (preferably 17.0.0 or later).
  UTILITIES:
    * R CMD check reports the use of the Fortran 90 random number
      generator RANDOM_NUMBER() and the subroutines to initialize it.
      'Writing R Extensions' has example code to use R's RNGs from
      Fortran.
  BUG FIXES:

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=136
2023-11-03 10:03:05 +00:00
Detlef Steuer
2cdba96aa7 - CHANGES IN R 4.3.1:
C-LEVEL FACILITIES:
    * The C-level API version of R's integrate(), Rdqags() in Applic.h,
      now returns the correct number of integrand evaluations neval,
      fixing PR#18515 reported and diagnosed by Stephen Wade.
    * The C prototypes for LAPACK calls dspgv and dtptrs in
      R_exts/Lapack.h had one too many and one too few character length
      arguments - but this has not caused any known issues. To get the
      corrected prototypes, include
              #include <Rconfig.h> // for PR18534fixed
              #ifdef PR18534fixed
              # define usePR18534fix 1
              #endif
              #include <R_exts/Lapack.h>
      
      in your C/C++ code (PR#18534).
  INSTALLATION:
    * Many of the checks of esoteric Internet operations and those
      using unreliable external sites have been moved to a new target
      that is not run by default and primarily intended for the core
      developers.  To run them use
              cd tests; make test-Internet-dev
      
  BUG FIXES:
    * .S3methods(), typically called from methods(), again marks
      methods from package base as visible.
      Also, the visibility of non-base methods is again determined by
      the method's presence in search().
    * tools::Rdiff() is now more robust against invalid strings, fixing
      installation tests on Windows without Rtools installed

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=134
2023-06-16 10:49:16 +00:00
Detlef Steuer
9c118db47b - CHANGES IN R 4.3.0:
SIGNIFICANT USER-VISIBLE CHANGES:
    * Calling && or || with LHS or (if evaluated) RHS of length greater
      than one is now always an error, with a report of the form
          'length = 4' in coercion to 'logical(1)'
      
      Environment variable _R_CHECK_LENGTH_1_LOGIC2_ no longer has any
      effect.
  NEW FEATURES:
    * The included BLAS sources have been updated to those shipped with
      LAPACK version 3.10.1.  (This caused some platform-dependent
      changes to package check output.)  And then to the sources from
      LAPACK version 3.11.0 (with changes only to double complex
      subroutines).
    * The included LAPACK sources have been updated to include the four
      Fortran 90 routines rather than their Fortran 77 predecessors.
      This may give some different signs in SVDs or
      eigendecompositions..  (This completes the transition to LAPACK
      3.10.x begun in R 4.2.0.)
    * The LAPACK sources have been updated to version 3.11.0.  (No new
      subroutines have been added, so this almost entirely bug fixes:
      Those fixes do affect some computations with NaNs, including R's
      NA.)
    * The parser now signals _classed_ errors, notably in case of the
      pipe operator |>.  The error object and message now give line and
      column numbers, mostly as proposed and provided by Duncan Murdoch
      in PR#18328.
    * toeplitz() is now generalized for asymmetric cases, with a
      toeplitz2() variant.
    * xy.coords() and xyz.coords() and consequently, e.g., plot(x,y,

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=132
2023-04-21 17:46:08 +00:00
Detlef Steuer
a21a85d9f1 - add patch to build with libcurl >= 8
OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=131
2023-04-10 11:07:10 +00:00
Detlef Steuer
ac8402584e - CHANGES IN R 4.2.3:
C-LEVEL FACILITIES:
    * The definition of DL_FUNC in R_ext/Rdynload.h has been changed to
      be fully C-compliant.  This means that functions loaded _via_ for
      example R_GetCCallable need to be cast to an appropriate type if
      they have any arguments.
    * .Machine has a new element sizeof.time_t to identify old systems
      with a 32-bit type and hence a limited range of date-times (and
      limited support for dates millions of years from present).
  PACKAGE INSTALLATION:
    * (Windows) The default C++ standard had accidentally been left at
      C++11 when it was changed to C++14 on Unix.
  BUG FIXES:
    * As "POSIXlt" objects may be "partially filled" and their list
      components meant to be recycled, length() now is the length of
      the longest component.
    * as.POSIXlt.Date() could underflow for dates in the far past (more
      than half a million years BCE).
    * as.Date.POSIXlt(x) would return "1970-01-01" instead of NA in R
      4.2.2, e.g., for
              x <- as.POSIXlt(c("2019-01-30","2001-1-1"))
              x$mon <- c(0L, NA); as.Date(x)
      
    * R CMD check failed to apply enabled _R_CHECK_SUGGESTS_ONLY_ to
      examples and vignettes (regression in R 4.2.0).
    * R CMD check did not re-build vignettes in separate processes by
      default (regression in R 4.2.0).
    * Running examples from HTML documentation now restores previous
      knitr settings and options (PR#18420).
    * Quartz: fonts are now located using Core Graphics API instead of

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=129
2023-03-15 11:32:27 +00:00
Detlef Steuer
65046b94f4 - CHANGES IN R 4.2.2:
NEW FEATURES:
    * tools::Rdiff(useDiff = TRUE) checks for the presence of an
      external diff command and switches to useDiff = FALSE if none is
      found.  This allows R CMD Rdiff to always work.
    * On Windows, environment variable R_LIBCURL_SSL_REVOKE_BEST_EFFORT
      can be used to switch to only 'best-effort' SSL certificate
      revocation checks with the default "libcurl" download method.
      This reduces security, but may be needed for downloads to work
      with MITM proxies (PR#18379).
    * (macOS) The run-time check for libraries from XQuartz for X11 and
      Tcl/Tk no longer uses otool from the Apple Developer Tools
      (PR#18400).
    * The LaTeX style for producing the PDF manuals, Rd.sty, now loads
      the standard amsmath, amsfonts and amssymb packages for greater
      coverage of math commands in the Rd \eqn and \deqn macros.  The
      \mathscr LaTeX command is also provided (via the mathrsfs
      package, if available, or the amsfonts bundle otherwise),
      fulfilling the wish of PR#18398.
    * (Windows) The default format of readClipboard() and
      writeClipboard() has been changed to 13 (CF_UNICODETEXT).
  INSTALLATION on a UNIX-ALIKE:
    * The PDF manuals (if built) can be compacted by the new target
      make compact-pdf (at the top level or in directory doc/manual).
    * There is now configure support for LLVM clang 15 on Linux, which
      defaults to position-independent (PIE) executables whereas
      gfortran does not.
    * Many small changes to ease compilation (and suppress warnings)
      with LLVM clang 15.
  BUG FIXES:

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=127
2022-10-31 18:58:37 +00:00
Detlef Steuer
c41d47a8df - CHANGES IN R 4.2.1:
NEW FEATURES:
    * New function utils::findCRANmirror() to find out if a CRAN mirror
      has been selected, otherwise fallback to the main site.  This
      behaves in the same way as tools::CRAN_package_db() and is
      intended for packages wishing to access CRAN for purposes other
      than installing packages.
      The need for this was shown by a day when the main CRAN website
      was offline and a dozen or so packages which had its URL
      hardcoded failed their checks.
  INSTALLATION on a UNIX-ALIKE:
    * The libraries searched for by --with-blas (without a value) now
      include BLIS (after OpenBLAS but before ATLAS).  And on macOS,
      the Accelerate framework (after ATLAS).  (This is patterned after
      the AX_BLAS macro from the Autoconf Archive.)
    * The included LAPACK sources have been updated to 3.10.1.
  UTILITIES:
    * The (full path to) the command tidy to be used for HTML
      validation can be set by environment variable R_TIDYCMD.
    * Setting environment variable _R_CHECK_RD_VALIDATE_RD2HTML_ to a
      false value will override R CMD check --as-cran and turn off HTML
      validation.  This provides a way to circumvent a problematic
      tidy.
      The 2006 version that ships with macOS is always skipped.
  C-LEVEL FACILITIES:
    * The undocumented legacy declarations of Sint, Sfloat, SINT_MAX
      and SINT_MIN in header R.h are deprecated.
  BUG FIXES:
    * fisher.test(d) no longer segfaults for "large" d; fixing PR#18336
      by preventing/detecting an integer overflow reliably.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=125
2022-06-23 08:41:07 +00:00
Detlef Steuer
57db97b391 - CHANGES IN R 4.2.0:
SIGNIFICANT USER-VISIBLE CHANGES:
    * The formula method of aggregate() now matches the generic in
      naming its first argument x (resolving PR#18299 by Thomas
      Soeiro).
      This means that calling aggregate() with a formula as a named
      first argument requires name formula in earlier versions of R and
      name x now, so portable code should not name the argument (code
      in many packages did).
    * Calling && or || with either argument of length greater than one
      now gives a warning (which it is intended will become an error).
    * Calling if() or while() with a condition of length greater than
      one gives an error rather than a warning.  Consequently,
      environment variable _R_CHECK_LENGTH_1_CONDITION_ no longer has
      any effect.
    * Windows users should consult the WINDOWS section below for some
      profound changes including
        * Support for 32-bit builds has been dropped.
        * UTF-8 locales are used where available.
        * The default locations for the R installation and personal
          library folder have been changed.
      Thanks to Tomas Kalibera for months of work on the Windows port
      for this release.
  NEW FEATURES:
    * matrix(x, n, m) now warns in more cases where length(x) differs
      from n * m, as suggested by Abby Spurdle and Wolfgang Huber in
      Feb 2021 on the R-devel mailing list.
      This warning can be turned into an error by setting environment
      variable _R_CHECK_MATRIX_DATA_ to TRUE: R CMD check --as-cran
      does so unless it is already set.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=123
2022-04-22 12:42:19 +00:00
Detlef Steuer
525a069147 - CHANGES IN R 4.1.3:
NEW FEATURES:
    * The default version of Bioconductor has been changed to 3.14.
      (This is used by setRepositories and the menus in GUIs.)
  UTILITIES:
    * R CMD check --as-cran has a workaround for a bug in versions of
      file up to at least 5.41 which mis-identify DBF files last
      changed in 2022 as executables.
  C-LEVEL FACILITIES:
    * The legacy S-compatibility macros SINGLE_* in R_ext/Constants.h
      (included by R.h) are deprecated and will be removed in R 4.2.0.
  BUG FIXES:
    * Initialization of self-starting nls() models with initialization
      functions following the pre-R-4.1.0 API (without the ...
      argument) works again for now, with a deprecation warning.
    * Fixed quoting of ~autodetect~ in Java setting defaults to avoid
      inadvertent user lookup due to leading ~, reported in PR#18231 by
      Harold Gutch.
    * substr(., start, stop) <- v now treats _negative_ stop values
      correctly.  Reported with a patch in PR#18228 by Brodie Gaslam.
    * Subscripting an array x without dimnames by a
      length(dim(x))-column character matrix gave "random" non-sense,
      now an error; reported in PR#18244 by Mikael Jagan.
    * ...names() now matches names(list(...)) closely, fixing PR#18247.
    * all.equal(*, scale = s) now works as intended when length(s) > 1,
      partly thanks to Michael Chirico's PR#18272.
    * print(x) for long vectors x now also works for named atomic
      vectors or lists and prints the correct number when reaching the
      getOption("max.print") limit; partly thanks to a report and
      proposal by Hugh Parsonage to the R-devel list.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=121
2022-03-11 07:57:50 +00:00
Detlef Steuer
db39f61405 - CHANGES IN R 4.1.2:
C-LEVEL FACILITIES:
    * The workaround in headers R.h and Rmath.h (using namespace std;)
      for the Oracle Developer Studio compiler is no longer needed now
      C++11 is required so has been removed.  A couple more usages of
      log() (which should have been std::log()) with an int argument
      are reported on Solaris.
    * The undocumented limit of 4095 bytes on messages from the
      S-compatibility macros PROBLEM and MESSAGE is now documented and
      longer messages will be silently truncated rather than
      potentially causing segfaults.
    * If the R_NO_SEGV_HANDLER environment variable is non-empty, the
      signal handler for SEGV/ILL/BUS signals (which offers recovery
      user interface) is not set. This allows more reliable debugging
      of crashes that involve the console.
  DEPRECATED AND DEFUNCT:
    * The legacy S-compatibility macros PROBLEM, MESSAGE, ERROR, WARN,
      WARNING, RECOVER, ... are deprecated and will be hidden in R
      4.2.0. R's native interface of Rf_error and Rf_warning has long
      been preferred.
  BUG FIXES:
    * .mapply(F, dots, .) no longer segfaults when dots is not a list
      and uses match.fun(F) as always documented; reported by Andrew
      Simmons in PR#18164.
    * hist(<Date>, ...) and hist(<POSIXt>, ...)  no longer pass
      arguments for rect() (such as col and density) to axis().
      (Thanks to Sebastian Meyer's PR#18171.)
    * \Sexpr{ch} now preserves Encoding(ch). (Thanks to report and
      patch by Jeroen Ooms in PR#18152.)
    * Setting the RNG to "Marsaglia-Multicarry" e.g., by RNGkind(), now

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=120
2021-11-01 09:26:43 +00:00
Detlef Steuer
dee68e80c3 - repaired https://bugzilla.suse.com/show_bug.cgi?id=1191380
(rpmacros now go to rpmmacrodir)
- minor clean-ups in spec file

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=119
2021-10-25 14:11:19 +00:00
Detlef Steuer
1f3117b959 - CHANGES IN R 4.1.1:
NEW FEATURES:
    * require(pkg, quietly = TRUE) is quieter and in particular does
      not warn if the package is not found.
  DEPRECATED AND DEFUNCT:
    * Use of ftp:// URIs should be regarded as deprecated, with
      on-going support confined to method = "libcurl" and not routinely
      tested.  (Nowadays no major browser supports them.)
    * The non-default method = "internal" is deprecated for http:// and
      ftp:// URIs for both download.file and url.
    * On Windows, method = "wininet" is deprecated for http://,
      https:// and ftp:// URIs for both download.file and url.  (A
      warning is only given for ftp://.)
      For ftp:// URIs the default method is now "libcurl" if available
      (which it is on CRAN builds).
      method = "wininet" remains the default for http:// and https://
      URIs but if libcurl is available, using method = "libcurl" is
      preferred.
  INSTALLATION:
    * make check now works also without a LaTeX installation.  (Thanks
      to Sebastian Meyer's PR#18103.)
  BUG FIXES:
    * make check-devel works again in an R build configured with
      --without-recommended-packages.
    * qnbinom(p, size, mu) for large size/mu is correct now in a range
      of cases (PR#18095); similarly for the (size, prob)
      parametrization of the negative binomial.  Also qpois() and
      qbinom() are better and or faster for extreme cases.  The
      underlying C code has been modularized and is common to all four
      cases of discrete distributions.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=118
2021-08-10 12:28:09 +00:00
Detlef Steuer
0e3723f5dc - The line %{__install} -m 755 -d %{_infodir}
no longer works in TW or Factory.
  But without that line it works everywhere. So this instruction
  was commented out of the spec file.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=116
2021-06-04 07:26:59 +00:00
Detlef Steuer
c44be959d8 - CHANGES IN R 4.1.0:
FUTURE DIRECTIONS:
    * It is planned that the 4.1.x series will be the last to support
      32-bit Windows, with production of binary packages for that
      series continuing until early 2023.
  SIGNIFICANT USER-VISIBLE CHANGES:
    * Data set esoph in package datasets now provides the correct
      numbers of controls; previously it had the numbers of cases added
      to these.  (Reported by Alexander Fowler in PR#17964.)
  NEW FEATURES:
    * www.omegahat.net is no longer one of the repositories known by
      default to setRepositories().  (Nowadays it only provides source
      packages and is often unavailable.)
    * Function package_dependencies() (in package tools) can now use
      different dependency types for direct and recursive dependencies.
    * The checking of the size of tarball in R CMD check --as-cran
      <pkg> may be tweaked via the new environment variable
      _R_CHECK_CRAN_INCOMING_TARBALL_THRESHOLD_, as suggested in
      PR#17777 by Jan Gorecki.
    * Using c() to combine a factor with other factors now gives a
      factor, an ordered factor when combining ordered factors with
      identical levels.
    * apply() gains a simplify argument to allow disabling of
      simplification of results.
    * The format() method for class "ftable" gets a new option justify.
      (Suggested by Thomas Soeiro.)
    * New ...names() utility.  (Proposed by Neal Fultz in PR#17705.)
    * type.convert() now warns when its as.is argument is not
      specified, as the help file always said it _should_.  In that
      case, the default is changed to TRUE in line with its change in

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=113
2021-05-18 17:04:46 +00:00
Detlef Steuer
fdea090cfd - improved spec file according to comments of dimstar in
https://build.opensuse.org/request/show/892685

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=112
2021-05-18 13:12:58 +00:00
Detlef Steuer
36d55e1a41 - To get in sync with d:l:R:autoCRAN the Matrix package's split
in -devel was reversed.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=111
2021-05-06 12:44:59 +00:00
Detlef Steuer
fc21ab1f29 - CHANGES IN R 4.0.5:
BUG FIXES:
    * The change to the internal table in R 4.0.4 for iswprint has been
          reverted: it contained some errors in printability of 'East
	        Asian' characters.
    * For packages using LazyData, R CMD build ignored the
          --resave-data option and the BuildResaveData field of the
	        DESCRIPTION file (in R versions 4.0.0 to 4.0.4).

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=109
2021-03-31 18:42:16 +00:00
Detlef Steuer
75c47203f4 - CHANGES IN R 4.0.4:
NEW FEATURES:
    * File share/texmf/tex/latex/jss.cls has been updated to work with
      LaTeX versions since Oct 2020.
    * Unicode character width tables (as used by nchar(, type = "w"))
      have been updated to Unicode 12.1 by Brodie Gaslam (PR#17781),
      including many emoji.
    * The internal table for iswprint (used on Windows, macOS and AIX)
      has been updated to include many recent Unicode characters.
  INSTALLATION on a UNIX-ALIKE:
    * If an external BLAS is specified by --with-blas=foo or _via_
      environment variable BLAS_LIBS is not found, this is now a
      configuration error.  The previous behaviour was not clear from
      the documentation: it was to continue the search as if
      --with-blas=yes was specified.
  BUG FIXES:
    * all.equal(x,y) now "sees" the two different NAs in factors,
      thanks to Bill Dunlap and others in PR#17897.
    * (~ NULL)[1] and similar formula subsetting now works, thanks to a
      report and patch by Henrik Bengtsson in PR#17935.  Additionally,
      subsetting leaving an empty formula now works too, thanks to
      suggestions by Suharto Anggono.
    * .traceback(n) keeps source references again, as before R 4.0.0,
       fixing a regression; introduced by the PR#17580, reported
       including two patch proposals by Brodie Gaslam.
    * unlist(plst, recursive=FALSE) no longer drops content for
      pairlists with list components, thanks to the report and patch by
      Suharto Anggono in PR#17950.
    * iconvlist() now also works on MUSL based (Linux) systems, from a
      report and patch suggestion by Wesley Chan in PR#17970.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=107
2021-02-15 10:11:21 +00:00
Detlef Steuer
2ea5b98ffb - CHANGES IN R 4.0.3:
NEW FEATURES:
    * On platforms using configure option --with-internal-tzcode,
      additional values "internal" and (on macOS only) "macOS" are
      accepted for the environment variable TZDIR.  (See ?TZDIR.)
      On macOS, "macOS" is used by default if the system timezone
      database is a newer version than that in the R installation.
    * When install.packages(type = "source") fails to find a package in
      a repository it mentions package versions which are excluded by
      their R version requirement and links to hints on why a package
      might not be found.
    * The default value for options("timeout") can be set from
      enviromnent variable R_DEFAULT_INTERNET_TIMEOUT, still defaulting
      to 60 (seconds) if that is not set or invalid.
      This may be needed when child R processes are doing downloads,
      for example during the installation of source packages which
      download jars or other forms of data.
  LINK-TIME OPTIMIZATION on a UNIX-ALIKE:
    * There is now support for parallelized Link-Time Optimization
      (LTO) with GCC and for 'thin' LTO with clang _via_ setting the
      LTO macro.
    * There is support for setting a different LTO flag for the Fortran
      compiler, including to empty when mixing clang and gfortran (as
      on macOS).  See file config.site.
    * There is a new LTO_LD macro to set linker options for LTO
      compilation, for example to select an alternative linker or to
      parallelize thin LTO.
  DEPRECATED AND DEFUNCT:
    * The LINPACK argument to chol.default(), chol2inv(),
      solve.default() and svd() has been defunct since R 3.1.0.  Using

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=105
2020-10-10 18:45:34 +00:00
Detlef Steuer
160b3af1ab - CHANGES IN R 4.0.2:
UTILITIES:
    * R CMD check skips vignette re-building (with a warning) if the
      VignetteBuilder package(s) are not available.
  BUG FIXES:
    * Paths with non-ASCII characters caused problems for package
      loading on Windows PR#17833.
    * Using tcltk widgets no longer crashes R on Windows.
    * source(*, echo=TRUE) no longer fails in some cases with empty
      lines; reported by Bill Dunlap in PR#17769.
    * on.exit() now correctly matches named arguments, thanks to
      PR#17815 (including patch) by Brodie Gaslam.
    * regexpr(*, perl=TRUE) no longer returns incorrect positions into
      text containing characters outside of the Unicode Basic
      Multilingual Plane on Windows.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=103
2020-06-22 09:19:33 +00:00
Detlef Steuer
9c0a3473da - CHANGES IN R 4.0.1:
NEW FEATURES:
    * paste() and paste0() gain a new optional argument recycle0.  When
      set to true, zero-length arguments are recycled leading to
      character(0) after the sep-concatenation, i.e., to the empty
      string "" if collapse is a string and to the zero-length value
      character(0) when collapse = NULL.
      A package whose code uses this should depend on R (>= 4.0.1).
    * The summary(<warnings>) method now maps the counts correctly to
      the warning messages.
  BUG FIXES:
    * aov(frml, ...) now also works where the formula deparses to more
      than 500 characters, thanks to a report and patch proposal by Jan
      Hauffa.
    * Fix a dozen places (code, examples) as Sys.setlocale() returns
      the new rather than the previous setting.
    * Fix for adding two complex grid units via sum().  Thanks to Gu
      Zuguang for the report and Thomas Lin Pedersen for the patch.
    * Fix parallel::mclapply(..., mc.preschedule=FALSE) to handle raw
      vector results correctly. PR#17779
    * Computing the base value, i.e., 2, "everywhere", now uses
      FLT_RADIX, as the original machar code looped indefinitely on the
      ppc64 architecture for the longdouble case.
    * In R 4.0.0, sort.list(x) when is.object(x) was true, e.g., for x
      <- I(letters), was accidentally using method = "radix".
      Consequently, e.g., merge(<data.frame>) was much slower than
      previously; reported in PR#17794.
    * plot(y ~ x, ylab = quote(y[i])) now works, as e.g., for xlab;
      related to PR#10525.
    * parallel::detect.cores(all.tests = TRUE) tries a matching OS name

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=101
2020-06-06 10:34:55 +00:00
Detlef Steuer
8037df5144 - CHANGES IN 4.0.0:
SIGNIFICANT USER-VISIBLE CHANGES:
    * Packages need to be (re-)installed under this version (4.0.0) of
      R.
    * matrix objects now also inherit from class "array", so e.g.,
      class(diag(1)) is c("matrix", "array").  This invalidates code
      incorrectly assuming that class(matrix_obj)) has length one.
      S3 methods for class "array" are now dispatched for matrix
      objects.
    * There is a new syntax for specifying _raw_ character constants
      similar to the one used in C++: r"(...)" with ... any character
      sequence not containing the sequence )".  This makes it easier to
      write strings that contain backslashes or both single and double
      quotes.  For more details see ?Quotes.
    * R now uses a stringsAsFactors = FALSE default, and hence by
      default no longer converts strings to factors in calls to
      data.frame() and read.table().
      A large number of packages relied on the previous behaviour and
      so have needed/will need updating.
    * The plot() S3 generic function is now in package base rather than
      package graphics, as it is reasonable to have methods that do not
      use the graphics package.  The generic is currently re-exported
      from the graphics namespace to allow packages importing it from
      there to continue working, but this may change in future.
      Packages which define S4 generics for plot() should be
      re-installed and package code using such generics from other
      packages needs to ensure that they are imported rather than rely
      on their being looked for on the search path (as in a namespace,
      the base namespace has precedence over the search path).
  REFERENCE COUNTING:

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=99
2020-04-24 08:19:33 +00:00
Detlef Steuer
6c5b6ddf3e - CHANGES IN R 3.6.3:
NEW FEATURES:
    * The included LAPACK has been updated to version 3.9.0 (for the
      included routines, just bug fixes).
  BUG FIXES:
    * Fixed a C level integer overflow in rhyper(); reported by
      Benjamin Tyner in PR#17694.
    * Uses of url(gzcon(.)) needing to extend buffer size have failed
      (with HTTP/2 servers), reported by G'abor Cs'ardi.
    * predict(loess(..), se=TRUE) now errors out (instead of
      seg.faulting etc) for large sample sizes, thanks to a report and
      patch by Benjamin Tyner in PR#17121.
    * tools:assertCondition(., "error") and hence assertError() no
      longer return errors twice (invisibly).
    * update(form, new) in the case of a long new formula sometimes
      wrongly eliminated the intercept from form, or (more rarely)
      added a garbage term (or seg.faulted !); the fix happened by
      simplifying the C-level logic of terms.formula().  Reported by
      Mathias Amb"uhl in PR#16326.
    * The error message from stopifnot(.., <error producing call>)
      again contains the full "stopifnot(.......)" call: Its attempted
      suppression did not work consistently.
    * On Windows, download.file(., , "wininet", headers=character())
      would fail; reported with patch proposal by Kevin Ushey in
      PR#17710.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=97
2020-02-29 18:09:42 +00:00
Marco Varlese
e39b5aae19 Accepting request 765896 from home:dancermak:branches:devel:languages:R:released
Don't mark %{_libdir}/R/doc as %doc

OBS-URL: https://build.opensuse.org/request/show/765896
OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=94
2020-01-21 06:51:51 +00:00
Detlef Steuer
d3eb6373ad - CHANGES IN R 3.6.2:
NEW FEATURES:
    * runmed(x, *) gains a new option na.action determining _how_ to
      handle NaN or NA in x.
    * dotchart() gains new options ann, xaxt, frame.plot and log.
  INSTALLATION on a UNIX-ALIKE:
    * Detection of the C stack direction has been moved from run-time
      to configure: this is safer with LTO builds and allows the
      detection to be overridden - see file config.site.
    * Source-code changes enable installation on platforms using gcc
      -fno-common (the expected default for gcc 10.x).
  C-LEVEL FACILITIES:
    * installTrChar (which is nowadays is wrapped by installChar) is
      defined in Rinternals.h.  (Neither are part of the API.)
  PACKAGE INSTALLATION:
    * Header Rconfig.h contains the value of FC_LEN_T deduced at
      installation which is used by the prototypes in headers
      R_ext/BLAS.h and R_ext/Lapack.h but to avoid extensive breakage
      this is only exposed when USE_FC_LEN_T is defined.
      If a package's C/C++ calls to BLAS/LAPACK allow for the 'hidden'
      arguments used by most Fortran compilers to pass the lengths of
      Fortran character arguments, define USE_FC_LEN_T and include
      Rconfig.h (possibly _via_ R.h) before including R_ext/BLAS.h or
      R_ext/Lapack.h.
    * A package with Fortran source code and perhaps C (but not C++)
      sources can request for its shared object/DLL to be linked by the
      Fortran compiler by including a line USE_FC_TO_LINK= in
      src/Makevars[.win] and using $(SHLIB_OPENMP_FFLAGS) as part of
      PKG_LIBS.
      The known reason for doing so is a package which uses Fortran

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=92
2019-12-12 11:38:51 +00:00
Detlef Steuer
bd409e5b4e Accepting request 739298 from home:RBrownSUSE:branches:devel:languages:R:released
Remove obsolete Groups tag (fate#326485)

OBS-URL: https://build.opensuse.org/request/show/739298
OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=91
2019-10-17 13:34:52 +00:00
Detlef Steuer
ba7faa7704 Accepting request 727202 from home:jayvdb:R-base
Use %license

OBS-URL: https://build.opensuse.org/request/show/727202
OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=89
2019-08-30 11:00:04 +00:00
Detlef Steuer
3e56b7308b Accepting request 726862 from home:jayvdb:R-base
Fix summary of R-core and R-core-devel

OBS-URL: https://build.opensuse.org/request/show/726862
OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=87
2019-08-29 11:56:02 +00:00
Detlef Steuer
0d900360c4 - CHANGES IN R 3.6.1:
INSTALLATION on a UNIX-ALIKE:
    * The default detection of the shell variable libNN is overridden
      for derivatives of Debian Linux, some of which have started to
      have a /usr/lib64 directory.  (E.g. Ubuntu 19.04.)  As before, it
      can be specified in config.site.
  UTILITIES:
    * R CMD config knows the values of AR and RANLIB, often set for LTO
      builds.
  DEPRECATED AND DEFUNCT:
    * The use of a character vector with .Fortran() is formally
      deprecated and gives a non-portability warning.  (It has long
      been strongly discouraged in 'Writing R Extensions'.)
  BUG FIXES:
    * On Windows, GUI package installation via menuInstallPkgs() works
      again, thanks to Len Weil's and Duncan Murdoch's PR#17556.
    * R CMD check on data() fixing PR#17558 thanks to Duncan Murdoch.
    * quasi(*, variance = list(..)) now works more efficiently, and
      should work in all cases fixing PR#17560.  Further, quasi(var =
      mu(1-mu)) and quasi(var = "mu ^ 3") now work, and quasi(variance
      = "log(mu)") now gives a correct error message.
    * Creation of lazy loading database during package installation is
      again robust to Rprofile changing the current working directory
      (PR#17559).
    * boxplot(y ~ f, horizontal=TRUE) now produces correct x- and
      y-labels.
    * rbind.data.frame() allows to keep <NA> levels from factor columns
      (PR#17562) via new option factor.exclude.
      Additionally, it works in one more case with matrix-columns which
      had been reported on 2017-01-16 by Krzysztof Banas.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=85
2019-07-05 07:43:02 +00:00
Detlef Steuer
bfbceecb88 - CHANGES IN R 3.6.0:
SIGNIFICANT USER-VISIBLE CHANGES:
    * Serialization format version 3 becomes the default for
      serialization and saving of the workspace (save(), serialize(),
      saveRDS(), compiler::cmpfile()).  Serialized data in format 3
      cannot be read by versions of R prior to version 3.5.0.
      Serialization format version 2 is still supported and can be
      selected by version = 2 in the save/serialization functions.  The
      default can be changed back for the whole R session by setting
      environment variables R_DEFAULT_SAVE_VERSION and
      R_DEFAULT_SERIALIZE_VERSION to 2.  For maximal
      back-compatibility, files vignette.rds and partial.rdb generated
      by R CMD build are in serialization format version 2, and resave
      by default produces files in serialization format version 2
      (unless the original is already in format version 3).
    * The default method for generating from a discrete uniform
      distribution (used in sample(), for instance) has been changed.
      This addresses the fact, pointed out by Ottoboni and Stark, that
      the previous method made sample() noticeably non-uniform on large
      populations.  See PR#17494 for a discussion.  The previous method
      can be requested using RNGkind() or RNGversion() if necessary for
      reproduction of old results.  Thanks to Duncan Murdoch for
      contributing the patch and Gabe Becker for further assistance.
      The output of RNGkind() has been changed to also return the
      'kind' used by sample().
  NEW FEATURES:
    * Sys.setFileTime() has been vectorized so arguments path and time
      of length greater than one are now supported.
    * axis() gets new option gap.axis = NA for specifying a
      multiplication factor for the minimal "gap" (distance) between

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=83
2019-04-26 09:27:24 +00:00
Detlef Steuer
9cfb74c627 - CHANGES IN R 3.5.3:
INSTALLATION on a UNIX-ALIKE:
    * Detection of flags for C++98/11/14/17 has been improved: in
      particular if CXX??STD is set, it is tried first with no
      additional flags.
  PACKAGE INSTALLATION:
    * New macro F_VISIBILITY as an alternative to F77_VISIBILITY.  This
      will become the preferred form in R 3.6.0.
  BUG FIXES:
    * writeLines(readLines(fnam), fnam) now works as expected, thanks
      to Peter Meissner's PR#17528.
    * setClassUnion() no longer warns, but uses message() for now, when
      encountering "non local" subclasses of class members.
    * stopifnot(exprs = T) no longer fails.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=81
2019-03-11 09:01:00 +00:00
Detlef Steuer
e3a1fdc9fc Accepting request 667336 from home:TheBlackCat:branches:devel:languages:R:released
- Add architecture-independent package directory.
  Taken from the Fedora version of R.
- Add RPM macros to ease installation of R packages.
- Fix building on older versions of openSUSE.

OBS-URL: https://build.opensuse.org/request/show/667336
OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=79
2019-01-30 21:02:41 +00:00
Detlef Steuer
14eb8a8bcf - CHANGES IN R 3.5.2:
PACKAGE INSTALLATION:
    * New macro CXX_VISIBILITY analogous to C_VISIBILITY (which several
      packages have been misusing for C++ code) for the default C++
      compiler (but not necessarily one used for non-default C++
      dialects like C++14).
  TESTING:
    * The random number generator tests in tests/p-r-random-tests.R no
      longer fail occasionally as they now randomly sample from
      "certified" random seeds.
  BUG FIXES:
    * The "glm" method of drop1() miscalculated the score test
      (test="Rao") when the model contained an offset.
    * Linear multiple empty models such as lm(y ~ 0) now have a
      correctly dimensioned empty coefficient matrix; reported by Brett
      Presnell.
    * vcov(<empty mlm>) and hence confint() now work (via a consistency
      change in summary.lm()).
    * confint(<multiple lm()>) now works correctly; reported on R-devel
      by Steven Pav.
    * quade.test() now also works correctly when its arguments are not
      yet sorted along groups, fixing PR#15842.
    * Installation on a Unix-alike tries harder to link to the pthread
      library where required (rather than relying on OpenMP to provide
      it: configuring with --disable-openmp was failing on some Linux
      systems).
    * The data.frame method for print(x) is fast now also for large
      data frames x and got an optional argument max, thanks to
      suggestions by Juan Telleria.
    * hist() no longer integer overflows in very rare cases, fixing

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=77
2018-12-20 08:51:43 +00:00
Detlef Steuer
26f71ecc85 - CHANGES IN R 3.5.1 :
BUG FIXES:
    * file("stdin") is no longer considered seekable.
    * dput() and dump() are no longer truncating when
      options(deparse.max.lines = *) is set.
    * Calls with an S3 class are no longer evaluated when printed,
      fixing part of PR#17398, thanks to a patch from Lionel Henry.
    * Allow file argument of Rscript to include space even when it is
      first on the command line.
    * callNextMethod() uses the generic from the environment of the
      calling method. Reported by Herv'e Pag`es with well documented
      examples.
    * Compressed file connections are marked as blocking.
    * optim(*, lower = c(-Inf, -Inf)) no longer warns (and switches the
      method), thanks to a suggestion by John Nash.
    * predict(fm, newdata) is now correct also for models where the
      formula has terms such as splines::ns(..) or stats::poly(..),
      fixing PR#17414, based on a patch from Duncan Murdoch.
    * simulate.lm(glm(*, gaussian(link = <non-default>))) has been
      corrected, fixing PR#17415 thanks to Alex Courtiol.
    * unlist(x) no longer fails in some cases of nested empty lists.
      Reported by Steven Nydick.
    * qr.coef(qr(<all 0, w/ colnames>)) now works.  Reported by Kun
      Ren.
    * The radix sort is robust to vectors with >1 billion elements (but
      long vectors are still unsupported). Thanks to Matt Dowle for the
      fix.
    * Terminal connections (e.g., stdin) are no longer buffered. Fixes
      PR#17432.
    * deparse(x), dput(x) and dump() now respect c()'s argument names

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=75
2018-07-02 08:28:20 +00:00
Detlef Steuer
18a0f0bc0e - CHANGES IN R 3.5.0:
SIGNIFICANT USER-VISIBLE CHANGES:
    * All packages are by default byte-compiled on installation.  This
      makes the installed packages larger (usually marginally so) and
      may affect the format of messages and tracebacks (which often
      exclude .Call and similar).
  NEW FEATURES:
    * factor() now uses order() to sort its levels, rather than
      sort.list().  This allows factor() to support custom vector-like
      objects if methods for the appropriate generics are defined.  It
      has the side effect of making factor() succeed on empty or
      length-one non-atomic vector(-like) types (e.g., "list"), where
      it failed before.
    * diag() gets an optional names argument: this may require updates
      to packages defining S4 methods for it.
    * chooseCRANmirror() and chooseBioCmirror() no longer have a
      useHTTPS argument, not needed now all R builds support https://
      downloads.
    * New summary() method for warnings() with a (somewhat
      experimental) print() method.
    * (methods package.) .self is now automatically registered as a
      global variable when registering a reference class method.
    * tempdir(check = TRUE) recreates the tempdir() directory if it is
      no longer valid (e.g. because some other process has cleaned up
      the /tmp directory).
    * New askYesNo() function and "askYesNo" option to ask the user
      binary response questions in a customizable but consistent way.
      (Suggestion of PR#17242.)
    * New low level utilities ...elt(n) and ...length() for working
      with ... parts inside a function.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=73
2018-04-23 08:38:03 +00:00
Darin Perusich
931bd56c52 added gcc-c++ build dependency
OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=72
2018-03-28 16:28:44 +00:00
Detlef Steuer
c8a8bc596a - Setting correctly R_UNZIPCMD
Corrects this bug: http://bugzilla.suse.com/show_bug.cgi?id=1083075

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=70
2018-03-20 16:23:15 +00:00
Detlef Steuer
4c13c7a0c9 - upstrem updated to 3.4.4
CHANGES IN R 3.4.4:
  NEW FEATURES:
    * Sys.timezone() tries more heuristics on Unix-alikes and so is
      more likely to succeed (especially on Linux).  For the slowest
      method, a warning is given recommending that TZ is set to avoid
      the search.
    * The version of LAPACK included in the sources has been updated to
      3.8.0 (for the routines used by R, a very minor bug-fix change).
    * parallel::detectCores(logical = FALSE) is ignored on Linux
      systems, since the information is not available with virtualized
      OSes.
  INSTALLATION on a UNIX-ALIKE:
    * configure will use pkg-config to find the flags to link to jpeg
      if available (as it should be for the recently-released jpeg-9c
      and libjpeg-turbo).  (This amends the code added in R 3.3.0 as
      the module name in jpeg-9c is not what that tested for.)
  DEPRECATED AND DEFUNCT:
    * Sys.timezone(location = FALSE) (which was a stop-gap measure for
      Windows long ago) is deprecated.  It no longer returns the value
      of environment variable TZ (usually a location).
    * Legacy support of make macros such as CXX1X is formally
      deprecated: use the CXX11 forms instead.
  BUG FIXES:
    * power.prop.test() now warns when it cannot solve the problem,
      typically because of impossible constraints. (PR#17345)
    * removeSource() no longer erroneously removes NULL in certain
      cases, thanks to D'enes T'oth.
    * nls(`NO [mol/l]` ~ f(t)) and nls(y ~ a) now work.  (Partly from
      PR#17367)

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=68
2018-03-15 09:22:40 +00:00
Detlef Steuer
57475c7718 Accepting request 586069 from home:elvigia:branches:devel:languages:R:released
- Do not buildrequire xorg-x11-devel but individual x libs.

OBS-URL: https://build.opensuse.org/request/show/586069
OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=66
2018-03-13 09:07:01 +00:00
Detlef Steuer
48857361c1 - upstream updated to 3.4.3
CHANGES IN R 3.4.3:
  INSTALLATION on a UNIX-ALIKE:
    * A workaround has been added for the changes in location of
      time-zone files in macOS 10.13 'High Sierra' and again in
      10.13.1, so the default time zone is deduced correctly from the
      system setting when R is configured with --with-internal-tzcode
      (the default on macOS).
    * R CMD javareconf has been updated to recognize the use of a Java
      9 SDK on macOS.
  BUG FIXES:
    * raw(0) & raw(0) and raw(0) | raw(0) again return raw(0) (rather
      than logical(0)).
    * intToUtf8() converts integers corresponding to surrogate code
      points to NA rather than invalid UTF-8, as well as values larger
      than the current Unicode maximum of 0x10FFFF.  (This aligns with
      the current RFC3629.)
    * Fix calling of methods on S4 generics that dispatch on ... when
      the call contains ....
    * Following Unicode 'Corrigendum 9', the UTF-8 representations of
      U+FFFE and U+FFFF are now regarded as valid by utf8ToInt().
    * range(c(TRUE, NA), finite = TRUE) and similar no longer return
      NA. (Reported by Lukas Stadler.)
    * The self starting function attr(SSlogis, "initial") now also
      works when the y values have exact minimum zero and is slightly
      changed in general, behaving symmetrically in the y range.
    * The printing of named raw vectors is now formatted nicely as for
      other such atomic vectors, thanks to Lukas Stadler.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=64
2017-11-30 10:20:31 +00:00
Detlef Steuer
5de4fb5325 - upstream update to 3.4.2
CHANGES IN R 3.4.2:
  NEW FEATURES:
    * Setting the LC_ALL category in Sys.setlocale() invalidates any
      cached locale-specific day/month names and the AM/PM indicator
      for strptime() (as setting LC_TIME has since R 3.1.0).
    * The version of LAPACK included in the sources has been updated to
      3.7.1, a bug-fix release.
    * The default for tools::write_PACKAGES(rds_compress=) has been
      changed to "xz" to match the compression used by CRAN.
    * c() and unlist() are now more efficient in constructing the
      names(.) of their return value, thanks to a proposal by Suharto
      Anggono.  (PR#17284)
  UTILITIES:
    * R CMD check checks for and R CMD build corrects CRLF line endings
      in shell scripts configure and cleanup (even on Windows).
  INSTALLATION on a UNIX-ALIKE:
    * The order of selection of OpenMP flags has been changed: Oracle
      Developer Studio 12.5 accepts -fopenmp and -xopenmp but only the
      latter enables OpenMP so it is now tried first.
  BUG FIXES:
    * within(List, rm(x1, x2)) works correctly again, including when
      List[["x2"]] is NULL.
    * regexec(pattern, text, *) now applies as.character(.) to its
      first two arguments, as documented.
    * write.table() and related functions, writeLines(), and perhaps
      other functions writing text to connections did not signal errors
      when the writes failed, e.g. due to a disk being full.  Errors
      will now be signalled if detected during the write, warnings if
      detected when the connection is closed.  (PR#17243)

OBS-URL: https://build.opensuse.org/package/show/devel:languages:R:released/R-base?expand=0&rev=62
2017-09-29 07:48:56 +00:00