d6d2a6e0c0
- upstream update to 3.4.0 CHANGES IN R 3.4.0: SIGNIFICANT USER-VISIBLE CHANGES: * (Unix-alike) The default methods for download.file() and url() now choose "libcurl" except for file:// URLs. There will be small changes in the format and wording of messages, including in rare cases if an issue is a warning or an error. For example, when HTTP re-direction occurs, some messages refer to the final URL rather than the specified one. Those who use proxies should check that their settings are compatible (see ?download.file: the most commonly used forms work for both "internal" and "libcurl"). * table() has been amended to be more internally consistent and become back compatible to R <= 2.7.2 again. Consequently, table(1:2, exclude = NULL) no longer contains a zero count for <NA>, but useNA = "always" continues to do so. * summary.default() no longer rounds, but its print method does resulting in less extraneous rounding, notably of numbers in the ten thousands. * factor(x, exclude = L) behaves more rationally when x or L are character vectors. Further, exclude = <factor> now behaves as documented for long. * Arithmetic, logic (&, |) and comparison (aka 'relational', e.g., <, ==) operations with arrays now behave consistently, notably for arrays of length zero. Arithmetic between length-1 arrays and longer non-arrays had silently dropped the array attributes and recycled. This now gives a warning and will signal an error in the future, as it has always for logic and comparison operations in these cases (e.g., compare matrix(1,1) + 2:3 and matrix(1,1) < 2:3).
Detlef Steuer
2017-04-21 17:19:06 +00:00
b264b4d087
- And again that ldconfig call. Newline was obviously wrong. Hopefully correct now.
Detlef Steuer
2017-04-18 08:28:09 +00:00
fe8645a7a3
- Jan Engelhardt <jengelh@inai.de> asked for reverting the change to the ldconfig call. So be it.
Detlef Steuer
2017-04-04 09:14:16 +00:00
1a30b531bd
- improvements for a) calling /sbin/ldconfig, which no longer gives a warning b) unregistering info-pages in %preun instead of %postun
Detlef Steuer
2017-03-21 12:21:17 +00:00
ad75041782
- a change in OBS now requires a BuildRequire: shadow for some openSUSE releases.
Detlef Steuer
2017-03-07 08:27:35 +00:00
34d04c1c22
Forgot to remove old sources.
Detlef Steuer
2017-03-06 11:50:47 +00:00
3351325562
- upstream release 3.3.3 - Most important changes CHANGES IN R 3.3.3: NEW FEATURES: * Changes when redirection of a http:// URL to a https:// URL is encountered: * The internal methods of download.file() and url() now report that they cannot follow this (rather than failing silently). * (Unix-alike) download.file(method = "auto") (the default) re-tries with method = "libcurl". * (Unix-alike) url(method = "default") with an explicit open argument re-tries with method = "libcurl". This covers many of the usages, e.g. readLines() with a URL argument. INSTALLATION on a UNIX-ALIKE: * The configure check for the zlib version is now robust to versions longer than 5 characters, including 1.2.11. UTILITIES: * Environmental variable _R_CHECK_TESTS_NLINES_ controls how R CMD check reports failing tests (see SS8 of the 'R Internals' manual). DEPRECATED AND DEFUNCT: * (C-level Native routine registration.) The undocumented styles field of the components of R_CMethodDef and R_FortranMethodDef is deprecated. BUG FIXES: * vapply(x, *) now works with long vectors x. (PR#17174) * isS3method("is.na.data.frame") and similar are correct now. (PR#17171) * grepRaw(<long>, <short>, fixed = TRUE) now works, thanks to a patch by Mikko Korpela. (PR#17132) * Package installation into a library where the package exists
Detlef Steuer
2017-03-06 11:39:41 +00:00
70c89d3d38
- upstream release 3.3.2 - Most important changes CHANGES IN R 3.3.2: NEW FEATURES: * extSoftVersion() now reports the version (if any) of the readline library in use. * The version of LAPACK included in the sources has been updated to 3.6.1, a bug-fix release including a speedup for the non-symmetric case of eigen(). * Use options(deparse.max.lines=) to limit the number of lines recorded in .Traceback and other deparsing activities. * format(<AsIs>) looks more regular, also for non-character atomic matrices. * abbreviate() gains an option named = TRUE. * The online documentation for package methods is extensively rewritten. The goals are to simplify documentation for basic use, to note old features not recommended and to correct out-of-date information. * Calls to setMethod() no longer print a message when creating a generic function in those cases where that is natural: S3 generics and primitives. INSTALLATION and INCLUDED SOFTWARE: * Versions of the readline library >= 6.3 had been changed so that terminal window resizes were not signalled to readline: code has been added using a explicit signal handler to work around that (when R is compiled against readline >= 6.3). (PR#16604) * configure works better with Oracle Developer Studio 12.5. UTILITIES: * R CMD check reports more dubious flags in files src/Makevars[.in], including -w and -g.
Detlef Steuer
2016-10-31 11:56:24 +00:00
d898f0bc15
- upstream release 3.3.1 - Most important changes CHANGES IN R 3.3.1: BUG FIXES: * R CMD INSTALL and hence install.packages() gave an internal error installing a package called description from a tarball on a case-insensitive file system. * match(x, t) (and hence x %in% t) failed when x was of length one, and either character and x and t only differed in their Encoding or when x and t where complex with NAs or NaNs. (PR#16885.) * unloadNamespace(ns) also works again when ns is a 'namespace', as from getNamespace(). * rgamma(1,Inf) or rgamma(1, 0,0) no longer give NaN but the correct limit. * length(baseenv()) is correct now. * pretty(d, ..) for date-time d rarely failed when "halfmonth" time steps were tried (PR#16923) and on 'inaccurate' platforms such as 32-bit windows or a configuration with --disable-long-double; see comment #15 of PR#16761. * In text.default(x, y, labels), the rarely(?) used default for labels is now correct also for the case of a 2-column matrix x and missing y. * as.factor(c(a = 1L)) preserves names() again as in R < 3.1.0. * strtrim(""[0], 0[0]) now works. * Use of Ctrl-C to terminate a reverse incremental search started by Ctrl-R in the readline-based Unix terminal interface is now supported for readline >= 6.3 (Ctrl-G always worked). (PR#16603) * diff(<difftime>) now keeps the "units" attribute, as subtraction already did, PR#16940.
Detlef Steuer
2016-06-21 09:27:34 +00:00
082ea4f1e1
- further cleanup of spec file. Removed unneeded explicit Requires for libcairo2/libfreetype6/liblzma5/libreadline6 Removed removal of backup file that was meanwhile removed upstream.
Detlef Steuer
2016-05-18 08:00:58 +00:00
cd8815ce06
- upstream release 3.3.0 CHANGES IN R 3.3.0: SIGNIFICANT USER-VISIBLE CHANGES: * nchar(x, *)'s argument keepNA governing how the result for NAs in x is determined, gets a new default keepNA = NA which returns NA where x is NA, except for type = "width" which still returns 2, the formatting / printing width of NA. * All builds have support for https: URLs in the default methods for download.file(), url() and code making use of them. Unfortunately that cannot guarantee that any particular https: URL can be accessed. For example, server and client have to successfully negotiate a cryptographic protocol (TLS/SSL, ...) and the server's identity has to be verifiable _via_ the available certificates. Different access methods may allow different protocols or use private certificate bundles: we encountered a https: CRAN mirror which could be accessed by one browser but not by another nor by download.file() on the same Linux machine. NEW FEATURES: * The print method for methods() gains a byclass argument. * New functions validEnc() and validUTF8() to give access to the validity checks for inputs used by grep() and friends. * Experimental new functionality for S3 method checking, notably isS3method(). Also, the names of the R 'language elements' are exported as character vector tools::langElts. * str(x) now displays "Time-Series" also for matrix (multivariate) time-series, i.e. when is.ts(x) is true. * (Windows only) The GUI menu item to install local packages now accepts *.tar.gz files as well as *.zip files (but defaults to
Detlef Steuer
2016-05-03 10:27:27 +00:00
74ebd35844
- CHANGES IN R 3.2.5: BUG FIXES: • format.POSIXlt() behaved incorrectly in R 3.2.4. E.g. the output of format(as.POSIXlt(paste0(1940:2000,"-01-01"), tz = "CET"), usetz = TRUE) ended in two "CEST" time formats. • A typo in the Makefile for src/extra/xz prevented builds of liblzma.a. (Notice that this will become unbundled in 3.3.0.)
Detlef Steuer
2016-04-15 08:43:00 +00:00
83d5307250
- upstrem releases minorst bug fix release NEWS: The 3.2.4 release had two annoyances which we would rather not have in an "ultra-stable" release, designed to hang around for the duration of the 3.3 series. One was a relatively minor Makefile issue affecting system using R's bundled lzma library. The other, rather more serious, affected printing and formatting of POSIXlt objects, which would unpredictably get the Daylight Savings Time wrong.
Detlef Steuer
2016-03-17 09:33:57 +00:00
84db02f2c3
- Some version numbers of recommended packages corrected
Detlef Steuer
2016-03-11 15:56:23 +00:00
6e488d779e
- added MakefileTypo.patch to enable building for 12.2 was a one charcter show stopper
Detlef Steuer
2016-03-11 09:59:15 +00:00
48cc83b8b1
- upstream release 3.2.4, only minor improvements CHANGES IN R 3.2.4: NEW FEATURES: • install.packages() and related functions now give a more informative warning when an attempt is made to install a base package. • summary(x) now prints with less rounding when x contains infinite values. (Request of PR#16620.) • provideDimnames() gets an optional unique argument. • shQuote() gains type = "cmd2" for quoting in cmd.exe in Windows. (Response to PR#16636.) • The data.frame method of rbind() gains an optional argument stringsAsFactors (instead of only depending on getOption("stringsAsFactors")). • smooth(x, *) now also works for long vectors. • tools::texi2dvi() has a workaround for problems with the texi2dvi script supplied by texinfo 6.1. It extracts more error messages from the LaTeX logs when in emulation mode. UTILITIES: • R CMD check will leave a log file build_vignettes.log from the re-building of vignettes in the .Rcheck directory if there is a problem, and always if environment variable _R_CHECK_ALWAYS_LOG_VIGNETTE_OUTPUT_ is set to a true value. DEPRECATED AND DEFUNCT: • Use of SUPPORT_OPENMP from header Rconfig.h is deprecated in favour of the standard OpenMP define _OPENMP. (This has been the recommendation in the manual for a while now.) • The make macro AWK which is long unused by R itself but recorded in file etc/Makeconf is deprecated and will be removed in R
Detlef Steuer
2016-03-10 12:53:52 +00:00
5c65ef78b9
- The big split up. What was a monolithic R-base*rpm now is divided over 30 something packages, with the following layout. R-base-3.2.3: dummy packages, contains all of R Use R-base, if you don´t have a good understandig what it means to install only parts of it!
Detlef Steuer
2016-03-07 12:59:49 +00:00
2358319c12
- Upstream release R-3.2.3 CHANGES IN R 3.2.3: NEW FEATURES: * Some recently-added Windows time zone names have been added to the conversion table used to convert these to Olson names. (Including those relating to changes for Russia in Oct 2014, as in PR#16503.) * (Windows) Compatibility information has been added to the manifests for Rgui.exe, Rterm.exe and Rscript.exe. This should allow win.version() and Sys.info() to report the actual Windows version up to Windows 10. * Windows "wininet" FTP first tries EPSV / PASV mode rather than only using active mode (reported by Dan Tenenbaum). * which.min(x) and which.max(x) may be much faster for logical and integer x and now also work for long vectors. * The 'emulation' part of tools::texi2dvi() has been somewhat enhanced, including supporting quiet = TRUE. It can be selected by texi2dvi = "emulation". (Windows) MiKTeX removed its texi2dvi.exe command in Sept 2015: tools::texi2dvi() tries texify.exe if it is not found. * (Windows only) Shortcuts for printing and saving have been added to menus in Rgui.exe. (Request of PR#16572.) * loess(..., iterTrace=TRUE) now provides diagnostics for robustness iterations, and the print() method for summary(<loess>) shows slightly more. * The included version of PCRE has been updated to 8.38, a bug-fix release. * View() now displays nested data frames in a more friendly way. (Request with patch in PR#15915.) INSTALLATION and INCLUDED SOFTWARE:
Detlef Steuer
2015-12-11 08:53:02 +00:00
ba11902e87
- Reverse the whole split. Back to the big package. Had user reports of broken installations. R-base, R-base-devel and R-base-libs are provided for now. The big split will come for 3.3.0
Detlef Steuer
2015-12-10 15:50:28 +00:00
ca47076099
- R-base was changed from a giant monolith to thirty-some packages. There were requests to use the libs without the interpreter. Furthermore it is now possible to use a frugal installation of R. The following binaries are built now: R-base-3.2.2-5.1.x86_64.rpm : A Meta-package. Use this, and it looks just like it looked the last 10 years. Requires base and recommended packages. R-base-devel-3.2.2-5.1.x86_64.rpm: Just for backward compatibility. R-core-3.2.2-5.1.x86_64.rpm R-core-libs-3.2.2-5.1.x86_64.rpm R-core-devel-3.2.2-5.1.x86_64.rpm : The R-core packages install a bare-bones R. No packages inculded. R-grid-3.2.2-5.1.x86_64.rpm R-graphics-3.2.2-5.1.x86_64.rpm R-grDevices-3.2.2-5.1.x86_64.rpm R-datasets-3.2.2-5.1.x86_64.rpm R-stats4-3.2.2-5.1.x86_64.rpm R-methods-3.2.2-5.1.x86_64.rpm R-tcltk-3.2.2-5.1.x86_64.rpm R-compiler-3.2.2-5.1.x86_64.rpm R-parallel-3.2.2-5.1.x86_64.rpm R-splines-3.2.2-5.1.x86_64.rpm R-stats-3.2.2-5.1.x86_64.rpm R-utils-3.2.2-5.1.x86_64.rpm R-tools-3.2.2-5.1.x86_64.rpm : All the base packages. R-recommended-3.2.2-5.1.x86_64.rpm : A meta-package including all recommended packages. R-cluster-2.0.3-5.1.x86_64.rpm R-nlme-3.1.121-5.1.x86_64.rpm R-lattice-0.20.33-5.1.x86_64.rpm
Detlef Steuer
2015-12-09 10:25:58 +00:00
c26d42171a
Accepting request 325503 from devel:languages:R:released
Stephan Kulow
2015-08-27 06:55:58 +00:00
c6ee2c8958
- Upstream release 3.2.2 - Most important CHANGES IN R 3.2.2: SIGNIFICANT USER-VISIBLE CHANGES: * It is now easier to use secure downloads from https:// URLs on builds which support them: no longer do non-default options need to be selected to do so. In particular, packages can be installed from repositories which offer https:// URLs, and those listed by setRepositories() now do so (for some of their mirrors). Support for https:// URLs is available on Windows, and on other platforms if support for libcurl was compiled in and if that supports the https protocol (system installations can be expected to do). So https:// support can be expected except on rather old OSes (an example being OS X 'Snow Leopard', where a non-system version of libcurl can be used). (Windows only) The default method for accessing URLs _via_ download.file() and url() has been changed to be "wininet" using Windows API calls. This changes the way proxies need to be set and security settings made: there have been some reports of sites being inaccessible under the new default method (but the previous methods remain available). NEW FEATURES: * cmdscale() gets new option list. for increased flexibility when a list should be returned. * configure now supports texinfo version 6.0, which (unlike the change from 4.x to 5.0) is a minor update. (Wish of PR#16456.) * (Non-Windows only) download.file() with default method = "auto" now chooses "libcurl" if that is available and a https:// or ftps:// URL is used.
Detlef Steuer
2015-08-17 14:48:22 +00:00
5f9fd7ee3b
- Upstream release 3.2.1 - Improvement of build: include libcurl and texlive-dvips/ texlive-hevetic - Most important CHANGES IN R 3.2.1: NEW FEATURES: * utf8ToInt() now checks that its input is valid UTF-8 and returns NA if it is not. * install.packages() now allows type = "both" with repos = NULL if it can infer the type of file. * nchar(x, *) and nzchar(x) gain a new argument keepNA which governs how the result for NAs in x is determined. For the R 3.2.x series, the default remains FALSE which is fully back compatible. From R 3.3.0, the default will change to keepNA = NA and you are advised to consider this for code portability. * news() more flexibly extracts dates from package NEWS.Rd files. * lengths(x) now also works (trivially) for atomic x and hence can be used more generally as an efficient replacement of sapply(x, length) and similar. * The included version of PCRE has been updated to 8.37, a bug-fix release. * diag() no longer duplicates a matrix when extracting its diagonal. * as.character.srcref() gains an argument to allow characters corresponding to a range of source references to be extracted. BUG FIXES: * acf() and ccf() now guarantee values strictly in [-1,1] (instead of sometimes very slightly outside). PR#15832. * as.integer("111111111111") now gives NA (with a warning) as it does for the corresponding numeric or negative number coercions.
Detlef Steuer
2015-06-18 12:03:07 +00:00
df3820ed3c
- Upstream release 3.2.0 - Most important CHANGES IN 3.2.0: NEW FEATURES: * anyNA() gains a recursive argument. * When x is missing and names is not false (including the default value), Sys.getenv(x, names) returns an object of class "Dlist" and hence prints tidily. * (Windows.) shell() no longer consults the environment variable SHELL: too many systems have been encountered where it was set incorrectly (usually to a path where software was compiled, not where it was installed). R_SHELL, the preferred way to select a non-default shell, can be used instead. * Some unusual arguments to embedFonts() can now be specified as character vectors, and the defaults have been changed accordingly. * Functions in the Summary group duplicate less. (PR#15798) * (Unix-alikes.) system(cmd, input = ) now uses 'shell-execution-environment' redirection, which will be more natural if cmd is not a single command (but requires a POSIX-compliant shell). (Wish of PR#15508) * read.fwf() and read.DIF() gain a fileEncoding argument, for convenience. * Graphics devices can add attributes to their description in .Device and .Devices. Several of those included with R use a "filepath" attribute. * pmatch() uses hashing in more cases and so is faster at the expense of using more memory. (PR#15697) * pairs() gains new arguments to select sets of variables to be plotted against each other.
Detlef Steuer
2015-04-16 14:59:58 +00:00
b5285d66d3
- Upstream release 3.1.3 - Most important CHANGES IN R 3.1.3: NEW FEATURES: * The internal method of download.file() can now handle files larger than 2GB on 32-bit builds which support such files (tested on 32-bit R running on 64-bit Windows). * kruskal.test() warns on more types of suspicious input. * The as.dendrogram() method for "hclust" objects gains a check argument protecting against memory explosion for invalid inputs. * capabilities() has a new item long.double which indicates if the build uses a long double type which is longer than double. * nlm() no longer modifies the callback argument in place (a new vector is allocated for each invocation, which mimics the implicit duplication that occurred in R < 3.1.0); note that this is a change from the previously documented behavior. (PR#15958) * icuSetCollate() now accepts locale = "ASCII" which uses the basic C function strcmp and so collates strings byte-by-byte in numerical order. * sessionInfo() tries to report the OS version in use (not just that compiled under, and including details of Linux distributions). * model.frame() (used by lm() and many other modelling functions) now warns when it drops contrasts from factors. (Wish of PR#16119) * install.packages() and friends now accept the value type = "binary" as a synonym for the native binary type on the platform (if it has one). * Single source or binary files can be supplied for install.packages(type = "both") and the appropriate type and
Detlef Steuer
2015-03-09 10:30:40 +00:00
b3344180e0
Accepting request 259150 from devel:languages:R:released
Stephan Kulow
2014-11-02 15:46:28 +00:00
68079e9c3a
- Upstream release 3.1.2 - Most important CHANGES IN R 3.1.2: NEW FEATURES: * embedFonts() now defaults to format = "ps2write" for .ps and .eps files. This is available in Ghostscript 9.x (since 2010) whereas the previous default, format = "pswrite", was removed in Ghostscript 9.10. * For consistency with [dpqr]norm(), [dp]lnorm(sdlog = 0) model a point mass at exp(mulog) rather than return NaN (for an error). * capabilities() now reports if ICU is compiled in for use for collation (it is only actually used if a suitable locale is set for collation, and never for a C locale). * (OS X only.) Package tcltk checks when loaded if it is linked against the CRAN X11-based Tcl/Tk and if so that the Tcl/Tk component and the X11 libraries are installed. This allows more informative error messages to be given advising the installation of the missing component or of XQuartz. The X11() device and X11-based versions of the data editor and viewer (invoked by edit() and View() for data frames and matrices from command-line R) check that the X11 libraries are installed and if not advises installing XQuartz. * icuSetCollate() allows locale = "default", and locale = "none" to use OS services rather than ICU for collation. Environment variable R_ICU_LOCALE can be used to set the default ICU locale, in case the one derived from the OS locale is inappropriate (this is currently necessary on Windows). * New function icuGetCollate() to report on the ICU collation locale in use (if any). * utils::URLencode() was updated to use unreserved and reserved
Detlef Steuer
2014-10-31 12:03:13 +00:00
1ddbf8afb3
Accepting request 240206 from devel:languages:R:released
Stephan Kulow
2014-07-11 04:46:11 +00:00
22bceb8d4c
- Added Provides: R-parallel - Upstream release 3.1.1 - Most impotant CHANGES IN R 3.1.1: CHANGES IN R 3.1.1: NEW FEATURES: * When attach() reports conflicts, it does so compatibly with library() by using message(). * R CMD Sweave no longer cleans any files by default, compatibly with versions of R prior to 3.1.0. There are new options --clean, --clean=default and --clean=keepOuts. * tools::buildVignette() and tools::buildVignettes() with clean = FALSE no longer remove any created files. buildvignette() gains a keep argument for more cleaning customization. * The Bioconductor 'version' used by setRepositories() can now be set by environment variable R_BIOC_VERSION at runtime, not just when R is installed. (It has been stated that Bioconductor will switch from 'version' 2.14 to 'version' 3.0 during the lifetime of the R 3.1 series.) * Error messages from bugs in embedded Sexpr code in Sweave documents now report the source location. * type.convert(), read.table() and similar read.*() functions get a new numerals argument, specifying how numeric input is converted when its conversion to double precision loses accuracy. The default value, "allow.loss" allows accuracy loss, as in R versions before 3.1.0. * For some compilers, integer addition could overflow without a warning. R's internal code for both integer addition and subtraction is more robust now. (PR#15774) * The function determining the default number of knots for
Detlef Steuer
2014-07-10 12:38:20 +00:00
1d4f3741d0
Accepting request 238947 from devel:languages:R:released
Stephan Kulow
2014-07-02 13:04:40 +00:00
Detlef Steuer
Dominique Leuenberger
Stephan Kulow
Darin Perusich
Tomáš Chvátal
Ismail Dönmez
Lars Vogdt
Sascha Peilicke
Marcus Rueckert