- Update to 1.3.0:
* Fixed an issue causing bowtie to report incorrect results
when using a Bowtie 2 index.
* New, more efficient implementation of --reorder for
keeping SAM output lines in same order as input reads
* Added -x parameter for specifying index. bowtie still
supports specifying an index via positional parameter,
but this behavior will be deprecated.
* Migrated python scripts to python3.
* Fully removed colorspace functionality.
* Added support for compiling on ARM architectures.
* Fixed an issue preventing bowtie from outputting newlines
in --max and --un output files.
* Fixed an issue causing alignment results to vary based
on read names.
* Fixed an issue preventing --no-unal from suppressing
unmapped reads.
* Removed dependence on some third-party libraries,
simplifying the code and improving portability.
* Fix an issue preventing bowtie from running with
many threads on big-endian machines.
- Spec cleanup
- Enable aarch64 and disable ppc* and s390x.
OBS-URL: https://build.opensuse.org/request/show/834329
OBS-URL: https://build.opensuse.org/package/show/science/bowtie?expand=0&rev=6
- Update to version 1.2.3:
* Added support for reading and inspecting Bowtie 2 indexes.
Bowtie 2 indexes can now be used with either Bowtie or Bowtie
2.
* Added support for building an index from a gzipped-compressed
FASTA.
* Fixed issue preventing bowtie from reporting repeated
alignments when -M is specified.
* Fixed issue with -F mode omitting final base of each read.
* Fixed clipping of first letter of first read in batches after
first.
* Fixed an issue preventing bowtie wrapper script from finding
indexes.
- New BuildRequires: tbb-devel.
- Fix env based hashbangs.
- Use %%license to install LICENSE.
- Only build on 64-bit, building on 32-bit is no longer supported.
OBS-URL: https://build.opensuse.org/request/show/746517
OBS-URL: https://build.opensuse.org/package/show/science/bowtie?expand=0&rev=2
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
OBS-URL: https://build.opensuse.org/request/show/397076
OBS-URL: https://build.opensuse.org/package/show/science/bowtie?expand=0&rev=1
