Accepting request 1298608 from science

OBS-URL: https://build.opensuse.org/request/show/1298608
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/cadabra2?expand=0&rev=32

_service

@@ -0,0 +1,17 @@
+<?xml version="1.0"?>
+<services>
+  <service name="obs_scm" mode="manual">
+    <param name="url">https://github.com/kpeeters/cadabra2.git</param>
+    <param name="scm">git</param>
+    <param name="revision">2.5.14</param>
+    <param name="versionformat">@PARENT_TAG@</param>
+    <param name="filename">cadabra2</param>
+    <param name="submodules">enable</param>
+  </service>  <service name="tar" mode="buildtime"/>
+  <service name="recompress" mode="buildtime">
+    <param name="file">*.tar</param>
+    <param name="compression">xz</param>
+  </service>
+  <service name="set_version" mode="buildtime"/>
+</services>
+

cadabra2-2.4.5.6.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:9a3ebe3debd6efdd5f20a3c78acc2ef8933135d5f43da39b6ea107be94a9413c
-size 26827151

cadabra2-2.5.14.obscpio

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:37394b87204b6823aefa9f877ebfa23fcdb12ae529e8351bd94040ffbf5aee49
+size 90302478

cadabra2-disable-components-test.patch

@@ -1,8 +1,8 @@
-Index: cadabra2-2.3.9.3/tests/CMakeLists.txt
+Index: cadabra2-2.5.14/tests/CMakeLists.txt
 ===================================================================
---- cadabra2-2.3.9.3.orig/tests/CMakeLists.txt
+--- cadabra2-2.5.14.orig/tests/CMakeLists.txt
-+++ cadabra2-2.3.9.3/tests/CMakeLists.txt
++++ cadabra2-2.5.14/tests/CMakeLists.txt
-@@ -69,7 +69,6 @@ set(RTESTS
+@@ -71,7 +71,6 @@ set(RTESTS
    trigonometric
    noncovariant
    algebra

cadabra2-gtk.appdata.xml

@@ -1,27 +0,0 @@
-<?xml version='1.0' encoding='UTF-8'?>
-<component>
-  <id>cadabra2-gtk.desktop</id>
-  <metadata_license>CC0-1.0</metadata_license>
-  <name>Cadabra 2</name>
-  <project_license>GPL-3.0+</project_license>
-  <summary>A computer algebra system for problems in field theory</summary>
-  <url type="homepage">http://cadabra.science/</url>
-  <description>
-    <p>Cadabra2 is a computer algebra system (CAS) designed specifically for
-the solution of problems encountered in field theory.</p>
-    <p>It has been designed specifically for the solution of problems encountered
-in quantum and classical field theory. It has extensive functionality
-for tensor computer algebra, tensor polynomial simplification
-including multi-term symmetries, fermions and anti-commuting
-variables, Clifford algebras and Fierz transformations, implicit
-coordinate dependence, multiple index types and many more. The input
-format is a subset of TeX.</p>
-  </description>
-  <screenshots>
-    <screenshot type="default">
-      <image height="1440" width="1192">https://cadabra.science/static/images/screenshot.png</image>
-      <caption>Gamma matrix algebra in a Cadabra2 notebook</caption>
-    </screenshot>
-  </screenshots>
-  <update_contact>info@cadabra.science</update_contact>
-</component>

cadabra2-link-python.patch

@@ -1,27 +0,0 @@
-Index: cadabra2-2.4.5.6/core/CMakeLists.txt
-===================================================================
---- cadabra2-2.4.5.6.orig/core/CMakeLists.txt
-+++ cadabra2-2.4.5.6/core/CMakeLists.txt
-@@ -294,7 +294,7 @@ target_link_libraries(cadabra2 PRIVATE
-    ${GMPXX_LIBRARIES}
-    ${GMP_LIBRARIES}   
-    ${Boost_LIBRARIES}
--#  ${PYTHON_LIBRARIES}
-+   ${PYTHON_LIBRARIES}
- #  ${GLIBMM3_LIBRARIES}    
-    )
- 
-Index: cadabra2-2.4.5.6/core/packages/CMakeLists.txt
-===================================================================
---- cadabra2-2.4.5.6.orig/core/packages/CMakeLists.txt
-+++ cadabra2-2.4.5.6/core/packages/CMakeLists.txt
-@@ -66,8 +66,7 @@ foreach(PACKAGE ${COMPILED_PACKAGES})
-   set_target_properties(${PNAME} PROPERTIES RUNTIME_OUTPUT_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/cdb/${PINSTALL}")
-   set_target_properties(${PNAME} PROPERTIES LIBRARY_OUTPUT_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}/cdb/${PINSTALL}")
-   set_target_properties(${PNAME} PROPERTIES SUFFIX ".${PYTHON_MOD_SUFFIX}")
--
--  target_link_libraries(${PNAME} PUBLIC cadabra2 ${GMPXX_LIBRARIES})
-+  target_link_libraries(${PNAME} PUBLIC cadabra2 ${PYTHON_LIBRARIES} ${GMPXX_LIBRARIES} ${GMP_LIBRARIES})
-   target_include_directories(${PNAME} PUBLIC ${CADABRA_CORE_DIR})
- 
-   if(IPO_SUPPORTED)

cadabra2.changes

@@ -1,3 +1,184 @@
+-------------------------------------------------------------------
+Mon Aug  4 13:24:15 UTC 2025 - Atri Bhattacharya <badshah400@gmail.com>
+
+- Update to version 2.5.14:
+  * TeXmacs is supported again, including plotting (put the
+    config/init-cadabra2.scm file in the appropriate location).
+  * Plotting is now supported again by the Jupyter kernel.
+  * Support for plotting in Kitty and iTerm2 terminals.
+  * Group equal components when displaying component values of
+    tensors.
+  * Internal: some operations now use multiple threads (work in
+    progress).
+  * Internal: use a pool allocator for tree nodes.
+  * Internal: speedup in handling of Multiplier (test suite
+    speedup by 1.5x).
+  * Docs: add SympyBridge docs.
+  * Fix bug when subtracting two component expressions.
+  * Fix bug with NTensor broadcasting from scalar.
+  * Fix cadabra2-cli argument handling.
+  * Fix handling of code blocks in cadabra2-cli, making it
+    consistent with the notebook.
+  * Stability improvement to the SymPy bridge by walking the SymPy
+    AST directly instead of parsing printed output.
+  * Made \iu the imaginary unit, by default displaying as i .
+  * Fix loading cadabra2_defaults.py in the Jupyter kernel.
+  * Fix scrolling bug in notebook which would make the document
+    jump around for no good reason.
+  * Internal: refactor to enable cleaner insertion of related
+    properties on property declaration.
+  * Fix handling substitute with regex (gh#kpeeters/cadabra2#230).
+
+-------------------------------------------------------------------
+Fri May  9 02:49:50 UTC 2025 - Atri Bhattacharya <badshah400@gmail.com>
+
+- Update to version 2.5.12:
+  * Make evaluate handle expressions in which indices have been
+    fixed to integers explicitly (e.g. an epsilon tensor with one
+    index fixed to a number).
+  * New functionality to update and re-run cells based on the
+    value of a slider, to enable e.g. interactive plots.
+  * Initial support for numerical solving of ODEs.
+  * Bug fixes for nevaluate.
+  * Enable evaluate to figure out index ranges from Integer
+    properties.
+  * Avoid multiple identically-named notebook files used in import
+    mapping to the same converted .py file.
+  * Various fixes for hDPI displays to make plots and icons sharp
+    and decorations render at the correct size.
+  * Scrolling notebook to cell is now smooth.
+  * (Internal) Remove all dependence on deprecated gtkmm-3.0
+    features, in preparation of making the notebook build with
+    gtkmm-4.0.
+  * Add option to hide all input cells (for presentation
+    purposes).
+  * Add context menu for graphics/plot output to save as SVG.
+  * Make semicolons more reliably print the expression they
+    terminate.
+  * Add nintegrate for numerical integration.
+  * Make nevaluate handle complex-valued expressions.
+  * Better handling of floating point numbers. All multipliers are
+    now either rationals or doubles.
+  * New nval function to act as a generic frontend for numerical
+    evaluation of (sub-)expressions (work-in-progress).
+  * Add safeguards against passing expressions through the SymPy
+    bridge which SymPy cannot (yet) handle.
+  * Add functionality to drive the notebook via an external
+    script.
+  * Fix export of notebooks to HTML.
+- Drop MicroTeX as additional source since git submodule is now
+  correctly used by upstream.
+- Fix build for Leap 16.0.
+
+-------------------------------------------------------------------
+Wed Mar 26 07:10:51 UTC 2025 - Atri Bhattacharya <badshah400@gmail.com>
+
+- Drop no longer needed pcre-devel dependency.
+
+-------------------------------------------------------------------
+Mon Mar  3 09:03:37 UTC 2025 - Atri Bhattacharya <badshah400@gmail.com>
+
+- Update to version 2.5.10:
+  * Bugfix for eliminate_kronecker.
+  * Fix for building Cadabra as a C++ library.
+  * Various UI and typesetting bug fixes.
+  * Get rid of websocketpp in favour of boost::beast so we can
+    build with boost >= 1.87.0.
+  * Fix for the homebrew package, and option to install the
+    development branch using homebrew.
+  * Add caching to the processing of substitution rules (Daniel).
+  * Fixes for inline execution of Python functions in maths
+    expressions.
+  * Do not gobble normal output when an error occurs notebook
+    execution.
+  * Fix inconsistent behaviour and crashes with split-view mode.
+  * Fix display of LaTeXForm properties.
+  * Documentation updates.
+  * Close LaTeX input cells on running them (configurable).
+  * Cleanup and document kernel options.
+  * Various additions to the plotting package cdb.graphics.plot
+    including docs.
+  * Add preliminary support for Plotly as plotting backend.
+  * Word wrap LaTeX input cells to keep notebooks readable for any
+    window width.
+  * Internal changes for python path handling.
+- New BuildRequires: pkgconfig(openssl)
+- Add MicroTeX as separate tarball: this is missed by upstream git
+  as a submodule, so obs_scm _service's `enable_submodules` is
+  unable to include it either.
+- Drop cadabra2-default-python-path.patch: no longer needed after
+  changes to upstream logic for finding python.
+- Drop use of deprecated %suse_update_desktop_file.
+- Restrict building jupyter kernel to openSUSE >= 1650 to avoid
+  unresolvables on Leap 15/16.
+
+-------------------------------------------------------------------
+Fri Oct 25 09:46:14 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
+
+- Update to version 2.5.8:
+  * Fix a bug with sympy bridge.
+  * Fix various issues with the notebook interface.
+
+-------------------------------------------------------------------
+Mon Oct  7 19:25:33 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
+
+- Update to version 2.5.6:
+  * Clean up code to locate the Python installation substantially
+    to avoid references to hard-coded paths in binaries.
+- Drop upstreamed patches:
+  * cadabra2-cmake-correct-python-variable.patch.
+  * cadabra2-use-system-pybind11.patch.
+  * cadabra2-link-gmp.patch.
+- Add cadabra2-default-python-path.patch: Fix default python path
+  when starting up cadabra2.
+
+-------------------------------------------------------------------
+Mon Aug 12 04:32:18 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
+
+- Update to version 2.5.4:
+  *  Fix simplification of pow nodes.
+  *  Make ExNode iterators skip nodes hidden by zoom.
+  *  Fix canonicalise acting on expressions with
+     self-anticommuting objects and derivatives.
+  *  Fix crash when comparing with empty expressions.
+  *  Make zoom accept a list of patterns.
+  *  Fix bugs in getting Weight values from Python, and setting
+     multipliers in Python.
+  *  Add LaTeXString object to display LaTeX formatted strings on
+     capable frontends.
+  *  Fix a bug with canonicalise acting on vector-spinor objects.
+  *  Enable the use of Unicode greek characters as input (which
+     will get converted to LaTeX automatically) to enable
+     cut-n-paste in the terminal.
+  *  Fix handling of multi-line expressions (newlines now count as
+     a whitespace).
+  *  Fix canonicalise to allow for factors which are sums, as long
+     as these do not have indices.
+  *  Ability to use builtin MicroTeX for typesetting (the default
+     in 2.5.x), which removes the requirement to have a LaTeX
+     installation.
+  *  Experimental AppImages now available for Linux on both x86-64
+     and aarch64 architectures.
+  *  Removed deprecated GTK-3 features and cleaned up the UI.
+  *  Fix bug in code to interrupt a running computation.
+  *  Added dynamical cell updates, e.g. to create animations.
+- Add _service file to fetch sources from git to allow submodules
+  to be included in tarball.
+- Add patches to fix build:
+  * cadabra2-cmake-correct-python-variable.patch: Use correct
+    variable from FindPython, i.e. Python_EXECUTABLE, not
+    PYTHON_EXECUTABLE (gh#kpeeters/cadabra2#309).
+  * cadabra2-use-system-pybind11.patch: Allow use of system
+    pybind11 (gh#kpeeters/cadabra2#310).
+  * cadabra2-link-gmp.patch: Explicitly link to gmp library.
+- Drop cadabra2-link-python.patch: upstreamed.
+- Drop use of %suse_update_desktop_file: no longer needed.
+- Drop appdata file included as Source1, bundled files are now
+  installed correctly.
+- Use python-rpm-macros and setup to build with newer pythons on
+  Leap 15.X (does not yet work due to unavailability of
+  python311-sympy and python311-ipykernel on these distros).
+
 -------------------------------------------------------------------
 Thu Apr 18 19:37:14 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
 

cadabra2.obsinfo

@@ -0,0 +1,4 @@
+name: cadabra2
+version: 2.5.14
+mtime: 1753990114
+commit: a4ab1c93912f1724f2f3ef26e7deba5a1b694af6

cadabra2.spec

@@ -1,7 +1,7 @@
 #
 # spec file for package cadabra2
 #
-# Copyright (c) 2024 SUSE LLC
+# Copyright (c) 2025 SUSE LLC
 #
 # All modifications and additions to the file contributed by third parties
 # remain the property of their copyright owners, unless otherwise agreed
@@ -16,24 +16,41 @@
 #
 
 
+# Disable testing for 32-bit due to invalid free issue in test canonicalise: https://github.com/kpeeters/cadabra2/issues/280
+%ifarch %ix86
+%bcond_with tests
+%else
 %bcond_without tests
+%endif
+%{?sle15_python_module_pythons}
+%if 0%{?suse_version} >= 1600
+%global pythons python3
+%endif
+%if 0%{?suse_version} >= 1650
+%bcond_without jupyter
+%else
+%bcond_with jupyter
+%endif
 Name:           cadabra2
-Version:        2.4.5.6
+Version:        2.5.14
 Release:        0
 Summary:        A computer algebra system for solving problems in field theory
 License:        GPL-3.0-or-later
 Group:          Productivity/Scientific/Math
 URL:            https://cadabra.science/
-Source0:        https://github.com/kpeeters/cadabra2/archive/%{version}.tar.gz#/%{name}-%{version}.tar.gz
+Source0:        %{name}-%{version}.tar.xz
-Source1:        %{name}-gtk.appdata.xml
 # PATCH-FIX-UPSTREAM cadabra2-disable-components-test.patch gh#kpeeters/cadabra2#212 badshah400@gmail.com -- Disable a test that crashes for unknown reasons
 Patch0:         cadabra2-disable-components-test.patch
-# PATCH-FIX-UPSTREAM cadabra2-link-python.patch badshah400@gmail.com -- Link against python shared lib explicitly
+BuildRequires:  %{python_module devel >= 3.9}
-Patch1:         cadabra2-link-python.patch
+BuildRequires:  %{python_module gobject-devel}
+BuildRequires:  %{python_module matplotlib}
+BuildRequires:  %{python_module pybind11-devel}
+BuildRequires:  %{python_module sympy}
 BuildRequires:  appstream-glib
 BuildRequires:  cmake
+BuildRequires:  desktop-file-utils
 BuildRequires:  doxygen
-BuildRequires:  gcc-c++ >= 4.9
+BuildRequires:  gcc-c++
 BuildRequires:  gmp-devel
 BuildRequires:  hicolor-icon-theme
 BuildRequires:  libboost_date_time-devel
@@ -44,26 +61,22 @@ BuildRequires:  libboost_python3-devel
 BuildRequires:  libboost_regex-devel
 BuildRequires:  libboost_system-devel
 BuildRequires:  libuuid-devel
-BuildRequires:  pcre-devel
 BuildRequires:  pkgconfig
-BuildRequires:  python3-devel >= 3.9
+BuildRequires:  python-rpm-macros
-BuildRequires:  python3-gobject-devel
-BuildRequires:  python3-ipykernel
-BuildRequires:  python3-matplotlib
-BuildRequires:  python3-sympy
-BuildRequires:  update-desktop-files
 BuildRequires:  pkgconfig(gtk+-3.0)
 BuildRequires:  pkgconfig(gtkmm-3.0)
 BuildRequires:  pkgconfig(jsoncpp)
+BuildRequires:  pkgconfig(openssl)
 BuildRequires:  pkgconfig(sqlite3)
 Requires:       python3 >= 3.8
 Recommends:     %{name}-doc
-%if 0%{?suse_version} >= 1550
+%if %{with jupyter}
+BuildRequires:  %{python_module ipykernel}
 BuildRequires:  jupyter-jupyter_core-filesystem
 %endif
 # SECTION For test
 %if %{with tests}
-BuildRequires:  python3-gmpy2
+BuildRequires:  %{python_module gmpy2}
 %endif
 # /SECTION
 Recommends:     %{name}-examples
@@ -143,6 +156,7 @@ This package provides a jupyter kernel for %{name}.
 
 %prep
 %autosetup -p1
+
 rm examples/.gitignore
 # Remove timestamps from Doxygen HTML files
 echo "HTML_TIMESTAMP = NO" >> config/Doxyfile
@@ -150,13 +164,18 @@ echo "HTML_TIMESTAMP = NO" >> config/Doxyfile
 sed -i "1{/#!\/usr\/bin\/env python/d}" libs/appdirs/cdb_appdirs.py
 
 %build
+%{python_expand #
 %cmake \
   -DCMAKE_MANDIR:PATH=%{_mandir} \
   -DINSTALL_LATEX_DIR:PATH=%{_datadir}/texmf \
   -DENABLE_FRONTEND:BOOL=ON \
   -DENABLE_SYSTEM_JSONCPP:BOOL=ON \
   -DENABLE_MATHEMATICA:BOOL=OFF \
-  -DBUILD_TESTS:BOOL=%{?with_tests:ON}%{!?with_tests:OFF}
+  -DBUILD_TESTS:BOOL=%{?with_tests:ON}%{!?with_tests:OFF} \
+  -DPython_EXECUTABLE=%{_bindir}/$python \
+  -DENABLE_PY_JUPYTER=%{?with_jupyter:ON}%{!?with_jupyter:OFF} \
+  %{nil}
+}
 
 %cmake_build
 cd ..
@@ -165,19 +184,9 @@ cd ..
 %install
 %cmake_install
 
-%suse_update_desktop_file cadabra2-gtk
-
-# INSTALL APPDATA TO /usr/share/metainfo
-install -D -m0644 %{S:1} %{buildroot}%{_datadir}/metainfo/%{name}-gtk.appdata.xml
-
-# Replace "/usr/bin/env python3" hashbang by "/usr/bin/python3"
-%python3_fix_shebang
-
 mkdir -p %{buildroot}%{_datadir}/texmf/tex/latex/cadabra2/
 ln %{buildroot}%{_datadir}/cadabra2/latex/* %{buildroot}%{_datadir}/texmf/tex/latex/cadabra2/
 
-# Disable testing for 32-bit due to tolerance issues https://github.com/kpeeters/cadabra2/issues/280
-%ifnarch %ix86
 %if %{with tests}
 %check
 export PATH=${PATH}:%{buildroot}%{_bindir}
@@ -187,7 +196,6 @@ export PYTHONDONTWRITEBYTECODE=1
 export HOME=`pwd`
 %ctest
 %endif
-%endif
 
 %files
 %doc README.rst
@@ -213,15 +221,17 @@ export HOME=`pwd`
 %license doc/license.txt
 %{_bindir}/%{name}-gtk
 %{_datadir}/icons/hicolor/*/apps/cadabra2-gtk.*
-%{_datadir}/applications/cadabra2-gtk.desktop
+%{_datadir}/applications/*.cadabra2-gtk.desktop
 %dir %{_datadir}/metainfo
 %{_datadir}/metainfo/*.appdata.xml
 
+%if %{with jupyter}
 %files -n jupyter-cadabra2-kernel
 %license doc/license.txt
 %{python3_sitearch}/cadabra2_jupyter/
 %{python3_sitearch}/notebook/
 %{_jupyter_kernel_dir}/cadabra2/
+%endif
 
 %files examples
 %doc examples/