Accepting request 746509 from home:badshah400:branches:science
New package OBS-URL: https://build.opensuse.org/request/show/746509 OBS-URL: https://build.opensuse.org/package/show/science/diy?expand=0&rev=1
This commit is contained in:
Ana Guerrero
Git OBS Bridge
commit
6f676f83b1
23
.gitattributes
vendored
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23
.gitattributes
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.jar filter=lfs diff=lfs merge=lfs -text
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*.lz filter=lfs diff=lfs merge=lfs -text
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*.lzma filter=lfs diff=lfs merge=lfs -text
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*.obscpio filter=lfs diff=lfs merge=lfs -text
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*.oxt filter=lfs diff=lfs merge=lfs -text
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*.pdf filter=lfs diff=lfs merge=lfs -text
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*.png filter=lfs diff=lfs merge=lfs -text
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*.rpm filter=lfs diff=lfs merge=lfs -text
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*.tbz filter=lfs diff=lfs merge=lfs -text
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.ttf filter=lfs diff=lfs merge=lfs -text
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*.txz filter=lfs diff=lfs merge=lfs -text
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*.whl filter=lfs diff=lfs merge=lfs -text
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*.xz filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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1
.gitignore
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1
.gitignore
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.osc
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3
3.5.0.tar.gz
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3.5.0.tar.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:b3b5490441d521b6e9b33471c782948194bf95c7c3df3eb97bc5cf4530b91576
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size 283256
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4
_multibuild
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_multibuild
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<multibuild>
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<package>serial</package>
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<package>mpich</package>
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</multibuild>
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33
diy-disable-memory-heavy-tests.patch
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diy-disable-memory-heavy-tests.patch
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Index: diy-3.5.0/tests/CMakeLists.txt
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===================================================================
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--- diy-3.5.0.orig/tests/CMakeLists.txt
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+++ diy-3.5.0/tests/CMakeLists.txt
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@@ -133,14 +133,6 @@ if (mpi AND MPI
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endforeach (b)
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endforeach (p)
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- foreach (p 2 3)
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- math (EXPR b "${p} + 1")
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- add_test (NAME simple-test-p${p}-b${b}
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- COMMAND ${MPIEXEC} -np ${p} $<TARGET_FILE:simple-test> -b ${b}
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- )
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- set_tests_properties (simple-test-p${p}-b${b} PROPERTIES TIMEOUT 300 RUN_SERIAL ON)
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- endforeach (p)
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-
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foreach (p RANGE 1 ${maxp})
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foreach (b 2 4 8 9 12 24 36)
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add_test (NAME rexchange-test-p${p}-b${b}
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@@ -191,13 +183,6 @@ else (mpi AND MPI
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)
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endforeach (b)
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- foreach (b 3 4)
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- add_test (NAME simple-test-nompi-b${b}
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- COMMAND simple-test -b ${b}
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- )
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- set_tests_properties (simple-test-nompi-b${b} PROPERTIES TIMEOUT 300 RUN_SERIAL ON)
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- endforeach (b)
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-
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foreach (b 2 4 8 9 12 24 36)
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add_test (NAME rexchange-test-nompi-b${b}
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COMMAND rexchange-test -b ${b}
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17
diy.changes
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diy.changes
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-------------------------------------------------------------------
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Thu Nov 7 23:39:44 UTC 2019 - Atri Bhattacharya <badshah400@gmail.com>
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- Update to version 3.5.0
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* Release notes unavailable.
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- Implement multibuild using mpich and serial flavours (others
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fail during %%check and are not recommended anyway).
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- Implement %%check section.
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- Disable all but x86_64: no other arch supported.
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- Add diy-disable-memory-heavy-tests.patch: disable a few tests
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that are extremely memory expensive (>= 10 GB).
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-------------------------------------------------------------------
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Wed Nov 23 10:51:08 UTC 2016 - badshah400@gmail.com
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- Initial package.
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143
diy.spec
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diy.spec
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#
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# spec file for package diy
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#
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# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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# SECTION Multibuild Definitions
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%global flavor @BUILD_FLAVOR@%{nil}
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%define pname diy
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%if "%{flavor}" == ""
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%define package_name %{pname}
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ExclusiveArch: do_not_build
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%else
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ExclusiveArch: x86_64
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%endif
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%if "%{flavor}" == "serial"
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%undefine suffix
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%undefine mpi_flavor
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%endif
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%if "%{flavor}" == "mpich"
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%global mpi_flavor mpich
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%global mpi_min_ver 3.3.0
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%endif
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%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}
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%{?with_mpi:%{!?mpi_flavor:error "No MPI family specified!"}}
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%if 0%{!?package_name:1}
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%define package_name %{pname}%{?my_suffix}
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%endif
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%if %{without mpi}
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%define my_prefix %{_prefix}
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%define my_bindir %{_bindir}
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%define my_libdir %{_libdir}
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%define my_incdir %{_includedir}
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%else
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%define my_prefix %{_libdir}/mpi/gcc/%{mpi_flavor}%{?mpi_ext}
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%define my_bindir %{my_prefix}/bin
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%define my_libdir %{my_prefix}/%{_lib}
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%define my_incdir %{my_prefix}/include
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%define my_suffix -%{mpi_flavor}%{?mpi_ext}
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%endif
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# /SECTION
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Name: %{package_name}
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Version: 3.5.0
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Release: 0
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Summary: A block-parallel library
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License: BSD-3-Clause
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URL: https://github.com/diatomic/diy
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Source: https://github.com/diatomic/diy/archive/%{version}.tar.gz
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# PATCH-FIX-UPSTREAM diy-disable-memory-heavy-tests.patch badshah400@gmail.com -- Disable a few tests requiring more than 10 GB memory
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Patch0: diy-disable-memory-heavy-tests.patch
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BuildRequires: cmake >= 3.2
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BuildRequires: gcc-c++
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%if %{with mpi}
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BuildRequires: %{mpi_flavor}%{?mpi_ext}-devel
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%endif
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%description
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Diy is a block-parallel library for implementing scalable algorithms
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that can execute both in-core and out-of-core. The same program can be
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executed with one or more threads per MPI process, seamlessly
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combining distributed-memory message passing with shared-memory thread
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parallelism. The abstraction enabling these capabilities is block
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parallelism; blocks and their message queues are mapped onto
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processing elements (MPI processes or threads) and are migrated
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between memory and storage by the diy runtime. Complex communication
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patterns, including neighbor exchange, merge reduction, swap
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reduction, and all-to-all exchange, are possible in- and out-of-core
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in diy.
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%package devel
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Summary: A block-parallel library
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%description devel
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Diy is a block-parallel library for implementing scalable
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algorithms that can execute both in-core and out-of-core. The same
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program can be executed with one or more threads per MPI process,
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seamlessly combining distributed-memory message passing with
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shared-memory thread parallelism. The abstraction enabling these
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capabilities is block parallelism; blocks and their message queues
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are mapped onto processing elements (MPI processes or threads) and
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are migrated between memory and storage by the diy runtime. Complex
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communication patterns, including neighbor exchange, merge reduction,
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swap reduction, and all-to-all exchange, are possible in- and
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out-of-core in diy.
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This package provides the header files for development with diy.
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%prep
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%autosetup -p1 -n %{pname}-%{version}
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%build
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mkdir -p build
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pushd build
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# %%cmake can't be used directly because of custom INSTALL_PREFIX requirement
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cmake .. \
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-DCMAKE_BUILD_TYPE=RelWithDebInfo \
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-DCMAKE_INSTALL_PREFIX="%{my_prefix}" \
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%if %{with mpi}
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-DCMAKE_C_COMPILER="%{my_bindir}/mpicc" \
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-DCMAKE_CXX_COMPILER="%{my_bindir}/mpicxx"
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%else
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-DCMAKE_C_COMPILER=gcc \
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-DCMAKE_CXX_COMPILER=g++ \
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-Dmpi=OFF
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%endif
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%cmake_build
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popd
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%install
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%cmake_install
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%check
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%if %{with mpi}
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source %{my_bindir}/mpivars.sh
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%endif
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%ctest
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%files devel
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%doc README.md
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%license LICENSE.txt LEGAL.txt
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%{my_incdir}/*
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%changelog
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