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Accepting request 842001 from home:badshah400:branches:science

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- Update to version 3.3.8:
  * General bug fixes:
    - Issue #1995: Fix a failure in the GEBP kernel when using
      small L1 cache sizes, OpenMP and FMA.
    - Issue #1990: Make CMake accept installation paths relative
      to CMAKE_INSTALL_PREFIX.
    - Issue #1974: Fix issue when reserving an empty sparse matrix
    - Issue #1823: Fix incorrect use of std::abs
    - Issue #1788: Fix rule-of-three violations inside the stable
      modules. This fixes deprecated-copy warnings when compiling
      with GCC>=9. Also protect some additional Base-constructors
      from getting called by user code code (Issue #1587)
    - Issue #1796: Make matrix squareroot usable for Map and Ref
      types.
    - Issue #1281: Fix AutoDiffScalar's make_coherent for nested
      expression of constant ADs.
    - Issue #1761: Fall back is_integral to std::is_integral in
      c++11 and fix internal::is_integral<size_t/ptrdiff_t> with
      MSVC 2013 and older.
    - Issue #1741: Fix self-adjoint*matrix, triangular*matrix, and
      triangular^1*matrix with a destination having a non-trivial
      inner-stride.
    - Issue #1741: Fix SelfAdjointView::rankUpdate and product to
      triangular part for destination with non-trivial inner
      stride.
    - Issue #1741: Fix C.noalias() = A*C; with C.innerStride()!=1.
    - Issue #1695: Fix a numerical robustness issue in BDCSVD.
    - Issue #1692: Enable enum as sizes of Matrix and Array.
    - Issue #1689: Fix used-but-marked-unused warning.
    - Issue #1679: Avoid possible division by 0 in complex-schur.
    - Issue #1676: Fix C++17 template deduction in DenseBase.
    - Issue #1669: Fix PartialPivLU/inverse with zero-sized
      matrices.
    - Issue #1557: Fix RealSchur and EigenSolver for matrices with
      only zeros on the diagonal.
  * Performance related fixes:
    - Issue #1562: Optimize evaluation of small products of the
      form s*A*B by rewriting them as: s*(A.lazyProduct(B)) to
      save a costly temporary. Measured speedup from 2x to 5x...
    - Fix performance issue with SimplicialLDLT for complexes
      coefficients.
  * Misc fixes:
    - Fix QuaternionBase::cast for quaternion map and wrapper.
    - Fix case issue with Lapack unit tests.
    - Fix possible conflict with an externally defined "real" type
      when using gcc-5.
    - Provide numext::[u]int{32,64}_t.
    - Initialize isometric transforms like affine transforms.
    - Change typedefs from private to protected to fix MSVC
      compilation.
    - Fix compilation of FFTW unit test.
    - Fix compilation of BLAS backend and frontend.
    - Fix real/imag namespace conflict.
    - Avoid throwing in destructors.
    - Fix precision issue in SelfAdjointEigenSolver.h
    - Make digits10() return an integer.
    - Use pade for matrix exponential also for complex values.
    - Cast Index to RealScalar in SVDBase to fix an issue when
      RealScalar is not implicitly convertible to Index.
    - Provide EIGEN_HAS_C99_MATH when using MSVC.
    - Various fixes in polynomial solver and its unit tests.
    - nd 4415d4e2d: Extend polynomial solver unit tests to
      complexes.
    - Automatically switch between EigenSolver and
      ComplexEigenSolver, and fix a few Real versus Scalar issues.
    - Enable construction of Ref<VectorType> from a runtime
      vector.
    - Fix a problem of old gcc versions having problems with
      recursive #pragma GCC diagnostic push/pop.
    - Fix compilation with expression template scalar type.
    - Backport AVX512 implementation to 3.3.
    - Fix StlDeque compilation issue with GCC 10.
    - Avoid false-positive test results in non-linear optimization
      tests.
    - Fix undefined behaviour caused by uncaught exceptions in OMP
      section of parallel GEBP kernel.
    - Fix a bug with half-precision floats on GPUs.
  * Fixed warnings:
    - Fix some maybe-uninitialized warnings in AmbiVector.h and
      test bdcsvd.
    - Silent cmake warnings in Lapack CMakeLists.txt.
    - Rename variable which shadows class name in Polynomials
      module.
    - Workaround gcc's alloc-size-larger-than= warning in
      DenseStorage.h.
    - Hide some unused variable warnings in g++8.1 in Tensor
      contraction mapper.
    - Fix gcc 8.1 warning: "maybe use uninitialized" in std tests.
    - Fix always true warning with gcc 4.7in test numext.
    - Fix nonnull-compare warning in test geo_alignedbox.
    - Disable ignoring attributes warning in vectorization logic
      test.
    - Fix a gcc7 warning about bool * bool in abs2 default
      implementation.
    - Fix a warning in SparseSelfAdjointView about a branch
      statement always evaluation to false.
- Minor rebase of patches to fix offsets.
- Specify relative path to includedir as option to cmake as it
  only accepts paths relative to CMAKE_INSTALL_PREFIX now.
- Drop Group tags.

OBS-URL: https://build.opensuse.org/request/show/842001
OBS-URL: https://build.opensuse.org/package/show/science/eigen3?expand=0&rev=31
This commit is contained in:
Dirk Stoecker 2020-10-19 14:36:21 +00:00 committed by Git OBS Bridge
parent af13f5e779
commit b4b27e89e0
10 changed files with 140 additions and 35 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

8
0001-Disable-Altivec-for-ppc64le.patch
View File

@ -7,11 +7,11 @@ Subject: [PATCH] Disable Altivec for ppc64le
Eigen/Core | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
Index: eigen-eigen-67e894c6cd8f/Eigen/Core
Index: eigen-3.3.8/Eigen/Core
===================================================================
--- eigen-eigen-67e894c6cd8f.orig/Eigen/Core
+++ eigen-eigen-67e894c6cd8f/Eigen/Core
@@ -201,7 +201,7 @@
--- eigen-3.3.8.orig/Eigen/Core
+++ eigen-3.3.8/Eigen/Core
@@ -220,7 +220,7 @@
#undef bool
#undef vector
#undef pixel

8
0001-Do-stack-allignment-on-ppc.patch
View File

@ -7,11 +7,11 @@ Subject: [PATCH] Do stack allignment on ppc
Eigen/src/Core/util/Macros.h | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
Index: eigen-eigen-67e894c6cd8f/Eigen/src/Core/util/Macros.h
Index: eigen-3.3.8/Eigen/src/Core/util/Macros.h
===================================================================
--- eigen-eigen-67e894c6cd8f.orig/Eigen/src/Core/util/Macros.h
+++ eigen-eigen-67e894c6cd8f/Eigen/src/Core/util/Macros.h
@@ -701,7 +701,7 @@ namespace Eigen {
--- eigen-3.3.8.orig/Eigen/src/Core/util/Macros.h
+++ eigen-3.3.8/Eigen/src/Core/util/Macros.h
@@ -718,7 +718,7 @@ namespace Eigen {
// certain common platform (compiler+architecture combinations) to avoid these problems.
// Only static alignment is really problematic (relies on nonstandard compiler extensions),
// try to keep heap alignment even when we have to disable static alignment.

9
01_install_FindEigen3.patch
View File

@ -1,7 +1,8 @@
diff -rupN eigen-eigen-07105f7124f9/CMakeLists.txt eigen-eigen-07105f7124f9-new/CMakeLists.txt
--- eigen-eigen-07105f7124f9/CMakeLists.txt 2016-02-16 14:26:15.000000000 +0100
+++ eigen-eigen-07105f7124f9-new/CMakeLists.txt 2016-02-17 09:44:43.556543936 +0100
@@ -324,6 +324,11 @@ install(FILES
Index: eigen-3.3.8/CMakeLists.txt
===================================================================
--- eigen-3.3.8.orig/CMakeLists.txt
+++ eigen-3.3.8/CMakeLists.txt
@@ -429,6 +429,11 @@ install(FILES
DESTINATION ${INCLUDE_INSTALL_DIR} COMPONENT Devel
)

3
eigen-3.3.8.tar.bz2 Normal file
View File

@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:0215c6593c4ee9f1f7f28238c4e8995584ebf3b556e9dbf933d84feb98d5b9ef
size 1667794

9
eigen3-3.3.1-fixcmake.patch
View File

@ -1,7 +1,8 @@
diff -rupN eigen-eigen-323c052e1731/CMakeLists.txt eigen-eigen-323c052e1731-new/CMakeLists.txt
--- eigen-eigen-323c052e1731/CMakeLists.txt 2018-12-25 23:10:48.592420583 +0100
+++ eigen-eigen-323c052e1731-new/CMakeLists.txt 2018-12-25 23:10:48.659420305 +0100
@@ -531,7 +531,7 @@ set ( EIGEN_VERSION_MAJOR ${EIGEN_WORLD
Index: eigen-3.3.8/CMakeLists.txt
===================================================================
--- eigen-3.3.8.orig/CMakeLists.txt
+++ eigen-3.3.8/CMakeLists.txt
@@ -536,7 +536,7 @@ set ( EIGEN_VERSION_MAJOR ${EIGEN_WORLD
set ( EIGEN_VERSION_MINOR ${EIGEN_MAJOR_VERSION} )
set ( EIGEN_VERSION_PATCH ${EIGEN_MINOR_VERSION} )
set ( EIGEN_DEFINITIONS "")

3
eigen3-3.3.7.tar.bz2
View File

@ -1,3 +0,0 @@
version https://git-lfs.github.com/spec/v1
oid sha256:9f13cf90dedbe3e52a19f43000d71fdf72e986beb9a5436dddcd61ff9d77a3ce
size 1665168

12
eigen3-CastXML-support-for-aarch64.patch
View File

@ -13,10 +13,10 @@ Fixes: #1979
Eigen/src/Core/util/Macros.h | 6 ++++++
2 files changed, 8 insertions(+), 2 deletions(-)
Index: eigen-eigen-323c052e1731/Eigen/src/Core/arch/NEON/Complex.h
Index: eigen-3.3.8/Eigen/src/Core/arch/NEON/Complex.h
===================================================================
--- eigen-eigen-323c052e1731.orig/Eigen/src/Core/arch/NEON/Complex.h
+++ eigen-eigen-323c052e1731/Eigen/src/Core/arch/NEON/Complex.h
--- eigen-3.3.8.orig/Eigen/src/Core/arch/NEON/Complex.h
+++ eigen-3.3.8/Eigen/src/Core/arch/NEON/Complex.h
@@ -17,7 +17,7 @@ namespace internal {
inline uint32x4_t p4ui_CONJ_XOR() {
@ -35,10 +35,10 @@ Index: eigen-eigen-323c052e1731/Eigen/src/Core/arch/NEON/Complex.h
static uint64x2_t p2ul_CONJ_XOR = {0x0, 0x8000000000000000};
#else
const uint64_t p2ul_conj_XOR_DATA[] = { 0x0, 0x8000000000000000 };
Index: eigen-eigen-323c052e1731/Eigen/src/Core/util/Macros.h
Index: eigen-3.3.8/Eigen/src/Core/util/Macros.h
===================================================================
--- eigen-eigen-323c052e1731.orig/Eigen/src/Core/util/Macros.h
+++ eigen-eigen-323c052e1731/Eigen/src/Core/util/Macros.h
--- eigen-3.3.8.orig/Eigen/src/Core/util/Macros.h
+++ eigen-3.3.8/Eigen/src/Core/util/Macros.h
@@ -35,6 +35,12 @@
#define EIGEN_COMP_CLANG 0
#endif

104
eigen3.changes
View File

@ -1,3 +1,107 @@
-------------------------------------------------------------------
Thu Oct 15 13:23:17 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 3.3.8:
* General bug fixes:
- Issue #1995: Fix a failure in the GEBP kernel when using
small L1 cache sizes, OpenMP and FMA.
- Issue #1990: Make CMake accept installation paths relative
to CMAKE_INSTALL_PREFIX.
- Issue #1974: Fix issue when reserving an empty sparse matrix
- Issue #1823: Fix incorrect use of std::abs
- Issue #1788: Fix rule-of-three violations inside the stable
modules. This fixes deprecated-copy warnings when compiling
with GCC>=9. Also protect some additional Base-constructors
from getting called by user code code (Issue #1587)
- Issue #1796: Make matrix squareroot usable for Map and Ref
types.
- Issue #1281: Fix AutoDiffScalar's make_coherent for nested
expression of constant ADs.
- Issue #1761: Fall back is_integral to std::is_integral in
c++11 and fix internal::is_integral<size_t/ptrdiff_t> with
MSVC 2013 and older.
- Issue #1741: Fix self-adjoint*matrix, triangular*matrix, and
triangular^1*matrix with a destination having a non-trivial
inner-stride.
- Issue #1741: Fix SelfAdjointView::rankUpdate and product to
triangular part for destination with non-trivial inner
stride.
- Issue #1741: Fix C.noalias() = A*C; with C.innerStride()!=1.
- Issue #1695: Fix a numerical robustness issue in BDCSVD.
- Issue #1692: Enable enum as sizes of Matrix and Array.
- Issue #1689: Fix used-but-marked-unused warning.
- Issue #1679: Avoid possible division by 0 in complex-schur.
- Issue #1676: Fix C++17 template deduction in DenseBase.
- Issue #1669: Fix PartialPivLU/inverse with zero-sized
matrices.
- Issue #1557: Fix RealSchur and EigenSolver for matrices with
only zeros on the diagonal.
* Performance related fixes:
- Issue #1562: Optimize evaluation of small products of the
form s*A*B by rewriting them as: s*(A.lazyProduct(B)) to
save a costly temporary. Measured speedup from 2x to 5x...
- Fix performance issue with SimplicialLDLT for complexes
coefficients.
* Misc fixes:
- Fix QuaternionBase::cast for quaternion map and wrapper.
- Fix case issue with Lapack unit tests.
- Fix possible conflict with an externally defined "real" type
when using gcc-5.
- Provide numext::[u]int{32,64}_t.
- Initialize isometric transforms like affine transforms.
- Change typedefs from private to protected to fix MSVC
compilation.
- Fix compilation of FFTW unit test.
- Fix compilation of BLAS backend and frontend.
- Fix real/imag namespace conflict.
- Avoid throwing in destructors.
- Fix precision issue in SelfAdjointEigenSolver.h
- Make digits10() return an integer.
- Use pade for matrix exponential also for complex values.
- Cast Index to RealScalar in SVDBase to fix an issue when
RealScalar is not implicitly convertible to Index.
- Provide EIGEN_HAS_C99_MATH when using MSVC.
- Various fixes in polynomial solver and its unit tests.
- nd 4415d4e2d: Extend polynomial solver unit tests to
complexes.
- Automatically switch between EigenSolver and
ComplexEigenSolver, and fix a few Real versus Scalar issues.
- Enable construction of Ref<VectorType> from a runtime
vector.
- Fix a problem of old gcc versions having problems with
recursive #pragma GCC diagnostic push/pop.
- Fix compilation with expression template scalar type.
- Backport AVX512 implementation to 3.3.
- Fix StlDeque compilation issue with GCC 10.
- Avoid false-positive test results in non-linear optimization
tests.
- Fix undefined behaviour caused by uncaught exceptions in OMP
section of parallel GEBP kernel.
- Fix a bug with half-precision floats on GPUs.
* Fixed warnings:
- Fix some maybe-uninitialized warnings in AmbiVector.h and
test bdcsvd.
- Silent cmake warnings in Lapack CMakeLists.txt.
- Rename variable which shadows class name in Polynomials
module.
- Workaround gcc's alloc-size-larger-than= warning in
DenseStorage.h.
- Hide some unused variable warnings in g++8.1 in Tensor
contraction mapper.
- Fix gcc 8.1 warning: "maybe use uninitialized" in std tests.
- Fix always true warning with gcc 4.7in test numext.
- Fix nonnull-compare warning in test geo_alignedbox.
- Disable ignoring attributes warning in vectorization logic
test.
- Fix a gcc7 warning about bool * bool in abs2 default
implementation.
- Fix a warning in SparseSelfAdjointView about a branch
statement always evaluation to false.
- Minor rebase of patches to fix offsets.
- Specify relative path to includedir as option to cmake as it
only accepts paths relative to CMAKE_INSTALL_PREFIX now.
- Drop Group tags.
-------------------------------------------------------------------
Thu Sep 17 12:23:42 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>

12
eigen3.spec
View File

@ -18,6 +18,7 @@
%global flavor @BUILD_FLAVOR@%{nil}
%global pkgname eigen3
%global srcname eigen
%bcond_with tests
@ -26,13 +27,12 @@
%endif
Name: eigen3%{?pkgsuffix}
Version: 3.3.7
Version: 3.3.8
Release: 0
Summary: C++ Template Library for Linear Algebra
License: MPL-2.0 AND LGPL-2.1-only AND LGPL-2.1-or-later AND BSD-3-Clause
Group: Development/Libraries/C and C++
URL: http://eigen.tuxfamily.org/
Source0: https://bitbucket.org/eigen/eigen/get/%{version}.tar.bz2#/%{pkgname}-%{version}.tar.bz2
Source0: https://gitlab.com/libeigen/eigen/-/archive/%{version}/%{srcname}-%{version}.tar.bz2
Patch0: 0001-Disable-Altivec-for-ppc64le.patch
Patch1: 0001-Do-stack-allignment-on-ppc.patch
# PATCH-FIX-OPENSUSE eigen_pkgconfig.patch asterios.dramis@gmail.com -- Fix pkg-config file includedir
@ -79,7 +79,6 @@ numerical solvers, and related algorithms.
%package devel
Summary: C++ Template Library for Linear Algebra
Group: Development/Libraries/C and C++
# libeigen3-devel was last used at openSUSE 13.1 (version 3.2.0)
Provides: libeigen3-devel = %{version}
Obsoletes: libeigen3-devel < %{version}
@ -90,7 +89,6 @@ numerical solvers, and related algorithms.
%if "%{flavor}" == "docs"
Summary: Documentation for the Eigen3 C++ Template Library for Linear Algebra
Group: Documentation/HTML
%description
Documentation in HTML format for the Eigen3 C++ Template Library
@ -98,7 +96,7 @@ for Linear Algebra
%endif
%prep
%setup -q -n eigen-eigen-323c052e1731
%setup -q -n %{srcname}-%{version}
%patch0 -p1
%patch1 -p1
%patch2 -p1
@ -115,7 +113,7 @@ echo "HTML_TIMESTAMP = NO" >> doc/Doxyfile.in
%build
%cmake \
-DCMAKE_BUILD_TYPE=Release \
-DINCLUDE_INSTALL_DIR=%{_includedir}/eigen3 \
-DINCLUDE_INSTALL_DIR=include/eigen3 \
-DGOOGLEHASH_INCLUDES=%{_includedir}
%if "%{flavor}" == ""

7
eigen_pkgconfig.patch
View File

@ -1,6 +1,7 @@
diff -rupN eigen-eigen-07105f7124f9/eigen3.pc.in eigen-eigen-07105f7124f9-new/eigen3.pc.in
--- eigen-eigen-07105f7124f9/eigen3.pc.in 2016-02-16 14:26:15.000000000 +0100
+++ eigen-eigen-07105f7124f9-new/eigen3.pc.in 2016-02-20 19:13:19.816842461 +0100
Index: eigen-3.3.8/eigen3.pc.in
===================================================================
--- eigen-3.3.8.orig/eigen3.pc.in
+++ eigen-3.3.8/eigen3.pc.in
@@ -6,4 +6,4 @@ Description: A C++ template library for
Requires:
Version: @EIGEN_VERSION_NUMBER@