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- pre-release of 3.6.4 covering improved diagnostics on COVID-19

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lab1.diff and lab2.diff added  

- clean up of spec file to get rid of warnings
  added gnuhealth-rpmlintrc

OBS-URL: https://build.opensuse.org/package/show/Application:ERP:GNUHealth:Factory/gnuhealth?expand=0&rev=53
This commit is contained in:
Axel Braun 2020-04-22 10:09:41 +00:00 committed by Git OBS Bridge
parent 676bdc6c87
commit 192a4edc97
4 changed files with 242 additions and 5 deletions
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7
gnuhealth.changes
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@ -1,3 +1,9 @@
-------------------------------------------------------------------
Wed Apr 22 09:42:49 UTC 2020 - Axel Braun <axel.braun@gmx.de>
- pre-release of 3.6.4 covering improved diagnostics on COVID-19
lab1.diff and lab2.diff added
------------------------------------------------------------------- -------------------------------------------------------------------
Sun Apr 5 08:10:02 UTC 2020 - Axel Braun <axel.braun@gmx.de> Sun Apr 5 08:10:02 UTC 2020 - Axel Braun <axel.braun@gmx.de>
@ -15,6 +21,7 @@ Tue Mar 17 13:32:03 UTC 2020 - Axel Braun <axel.braun@gmx.de>
added gnuhealth-rpmlintrc added gnuhealth-rpmlintrc
------------------------------------------------------------------- -------------------------------------------------------------------
>>>>>>> ./gnuhealth.changes.r63b2f631c45c3a5b2477b50ba818a8ce
Sat Mar 14 15:24:49 UTC 2020 - Axel Braun <axel.braun@gmx.de> Sat Mar 14 15:24:49 UTC 2020 - Axel Braun <axel.braun@gmx.de>
- gnuhealth-control 3.6.3 - added chmod after getlang command - gnuhealth-control 3.6.3 - added chmod after getlang command

11
gnuhealth.spec
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@ -43,8 +43,8 @@ Source5: openSUSE-gnuhealth-setup
Source6: gnuhealth Source6: gnuhealth
Source7: gnuhealth-rpmlintrc Source7: gnuhealth-rpmlintrc
Patch0: shebang.diff Patch0: shebang.diff
##atch1: xmlfix.diff Patch1: lab1.diff
##atch2: demo.diff Patch2: lab2.diff
BuildArch: noarch BuildArch: noarch
@ -108,8 +108,8 @@ This package provides the interface to Orthanc
%prep %prep
%setup -q -n %{name}-%{version} %setup -q -n %{name}-%{version}
%patch0 -p1 %patch0 -p1
##atch1 -p1 %patch1 -p1
##atch2 -p1 %patch2 -p1
cp %{S:1} . cp %{S:1} .
cp %{S:2} . cp %{S:2} .
@ -145,7 +145,7 @@ mkdir -p %{buildroot}%{_sysconfdir}/tryton
#remove double license file: #remove double license file:
rm backend/fhir/client/COPYING rm backend/fhir/client/COPYING
#Move FHIR serer to examples directory #Move FHIR server to examples directory
mkdir -p -m 755 %{buildroot}%{_docdir}/%{name}/examples/ mkdir -p -m 755 %{buildroot}%{_docdir}/%{name}/examples/
mv backend/fhir* %{buildroot}%{_docdir}/%{name}/examples/. mv backend/fhir* %{buildroot}%{_docdir}/%{name}/examples/.
rmdir backend rmdir backend
@ -189,6 +189,7 @@ EOF
%{python3_sitelib}/trytond/modules/health_orthanc* %{python3_sitelib}/trytond/modules/health_orthanc*
%files %files
%defattr(-,root,root)
%{_bindir}/gnuhealth-control %{_bindir}/gnuhealth-control
%{_bindir}/openSUSE-gnuhealth-setup %{_bindir}/openSUSE-gnuhealth-setup
%{_bindir}/install_demo_database.sh %{_bindir}/install_demo_database.sh

154
lab1.diff Normal file
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@ -0,0 +1,154 @@
# HG changeset patch
# User Luis Falcon <falcon@gnuhealth.org>
# Date 1585952786 -3600
# Node ID 79084d43ec44b89679016a699060bdd8a0033e88
# Parent bf15b71efbd4b1ff7230520165f264c23586e576
health_lab: task #15563: Assign health condition from a confirmed lab
* Include the lab_confirmed and lab test ID reference on the patient health condition model
* Include in the tree view lab confirmed conditions
* Search/ filter by lab confirmed pathologies
* Include the pathology in the patient lab test form
diff --git a/health_lab/__init__.py b/health_lab/__init__.py
--- a/health_lab/__init__.py
+++ b/health_lab/__init__.py
@@ -40,6 +40,7 @@
CreateLabTestOrderInit,
RequestTest,
RequestPatientLabTestStart,
+ PatientHealthCondition,
module='health_lab', type_='model')
Pool.register(
CreateLabTestOrder,
diff --git a/health_lab/health_lab.py b/health_lab/health_lab.py
--- a/health_lab/health_lab.py
+++ b/health_lab/health_lab.py
@@ -27,12 +27,12 @@
from trytond.pool import Pool
from trytond import backend
from trytond.tools.multivalue import migrate_property
-
+from trytond.pyson import Eval, Not, Bool, PYSONEncoder, Equal, And, Or, If
__all__ = ['GnuHealthSequences', 'GnuHealthSequenceSetup',
'PatientData', 'TestType', 'Lab',
'GnuHealthLabTestUnits', 'GnuHealthTestCritearea',
- 'GnuHealthPatientLabTest']
+ 'GnuHealthPatientLabTest','PatientHealthCondition']
sequences = ['lab_sequence', 'lab_request_sequence']
@@ -80,7 +80,7 @@
lab_sequence = fields.Many2One('ir.sequence',
'Lab Result Sequence', required=True,
domain=[('code', '=', 'gnuhealth.lab')])
-
+
@classmethod
def __register__(cls, module_name):
TableHandler = backend.get('TableHandler')
@@ -112,7 +112,7 @@
ModelData = pool.get('ir.model.data')
return ModelData.get_id(
'health_lab', 'seq_gnuhealth_lab_test')
-
+
# END SEQUENCE SETUP , MIGRATION FROM FIELDS.MultiValue
@@ -194,6 +194,11 @@
date_analysis = fields.DateTime('Date of the Analysis', select=True)
request_order = fields.Integer('Request', readonly=True)
+ pathology = fields.Many2One(
+ 'gnuhealth.pathology', 'Pathology',
+ help='Pathology confirmed / associated to this lab test. '
+ 'If set, a new health condition will be generated for the person')
+
analytes_summary = \
fields.Function(fields.Text('Summary'),
'get_analytes_summary')
@@ -415,3 +420,18 @@
default['date'] = cls.default_date()
return super(GnuHealthPatientLabTest, cls).copy(tests,
default=default)
+
+class PatientHealthCondition(ModelSQL, ModelView):
+ 'Patient Conditions History'
+ __name__ = 'gnuhealth.patient.disease'
+
+ # Adds lab confirmed and the link to the test to the
+ # Patient health Condition
+
+ lab_confirmed = fields.Boolean('Lab Confirmed', help='Confirmed by'
+ ' laboratory test')
+
+ lab_test = fields.Many2One('gnuhealth.lab','Lab Test',
+ domain=[('patient', '=', Eval('name'))], depends=['name'],
+ states={'invisible': Not(Bool(Eval('lab_confirmed')))},
+ help='Lab test that confirmed the condition')
diff --git a/health_lab/health_lab_view.xml b/health_lab/health_lab_view.xml
--- a/health_lab/health_lab_view.xml
+++ b/health_lab/health_lab_view.xml
@@ -194,5 +194,19 @@
<field name="action" ref="act_patient_lab_history_form1"/>
</record>
+<!-- PATIENT HEALTH CONDITION -->
+
+ <record model="ir.ui.view" id="view_gnuhealth_patient_diseases_view_form">
+ <field name="model">gnuhealth.patient.disease</field>
+ <field name="inherit" ref="health.gnuhealth_patient_diseases_view_form"/>
+ <field name="name">gnuhealth_patient_health_condition_form</field>
+ </record>
+
+ <record model="ir.ui.view" id="tree_gnuhealth_patient_diseases">
+ <field name="model">gnuhealth.patient.disease</field>
+ <field name="inherit" ref="health.gnuhealth_patient_diseases_tree"/>
+ <field name="name">gnuhealth_patient_health_condition_tree</field>
+ </record>
+
</data>
</tryton>
diff --git a/health_lab/view/gnuhealth_lab.xml b/health_lab/view/gnuhealth_lab.xml
--- a/health_lab/view/gnuhealth_lab.xml
+++ b/health_lab/view/gnuhealth_lab.xml
@@ -20,6 +20,9 @@
<field name="requestor"/>
<label name="request_order"/>
<field name="request_order"/>
+ <label name="pathology"/>
+ <field name="pathology"/>
+ <newline/>
<field name="critearea" colspan="4" view_ids="health_lab.test_critearea_view_tree_lab,health_lab.test_critearea_view_form_lab"/>
</page>
<page string="Extra Info" id="lab_extra_info">
diff --git a/health_lab/view/gnuhealth_patient_health_condition_form.xml b/health_lab/view/gnuhealth_patient_health_condition_form.xml
new file mode 100644
--- /dev/null
+++ b/health_lab/view/gnuhealth_patient_health_condition_form.xml
@@ -0,0 +1,11 @@
+<?xml version="1.0"?>
+<data>
+ <xpath expr="/form/group[@id=&quot;group_related_evaluations&quot;]" position="before">
+ <group string="Laboratory" colspan="4" id="group_lab_info">
+ <label name="lab_confirmed"/>
+ <field name="lab_confirmed"/>
+ <label name="lab_test"/>
+ <field name="lab_test"/>
+ </group>
+ </xpath>
+</data>
diff --git a/health_lab/view/gnuhealth_patient_health_condition_tree.xml b/health_lab/view/gnuhealth_patient_health_condition_tree.xml
new file mode 100644
--- /dev/null
+++ b/health_lab/view/gnuhealth_patient_health_condition_tree.xml
@@ -0,0 +1,6 @@
+<?xml version="1.0"?>
+<data>
+ <xpath expr="/tree/field[@name=&quot;disease_severity&quot;]" position="after">
+ <field name="lab_confirmed" expand="1"/>
+ </xpath>
+</data>

75
lab2.diff Normal file
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@ -0,0 +1,75 @@
# HG changeset patch
# User Luis Falcon <falcon@gnuhealth.org>
# Date 1586114129 -3600
# Node ID 18af72df5cbef5adb45559c3c469f53bf40013a5
# Parent e8a18c4ad9b29a7f6af3a3ff3bd5d127c590e135
task #15563: Assign health condition from a confirmed lab. Health_crypto_lab
#health_crypto_lab:
#
#Once the lab test is VALIDATED, and the confirmed pathology is enter in the lab test, the following events will be automatically #triggered:
#
#-> A new health condition will be created in the patient history, with the condition confirmed, and the link to the the lab test.
#
#-> Two pages of life (PoL) will be created:
#
# One for the Lab test
# One for the Health condition
#
#Remember that the validation functionality of the lab test requires the health_crypto_lab.
diff --git a/health_crypto_lab/health_crypto_lab.py b/health_crypto_lab/health_crypto_lab.py
--- a/health_crypto_lab/health_crypto_lab.py
+++ b/health_crypto_lab/health_crypto_lab.py
@@ -176,6 +176,12 @@
if (document.patient.name.federation_account):
cls.create_lab_pol (document)
+ # Create Health condition to the patient
+ # if there is a confirmed pathology associated and
+ # validated to the lab test result
+ if (document.pathology):
+ cls.create_health_condition (document)
+
@classmethod
def get_serial(cls,document):
@@ -241,6 +247,27 @@
'invisible': Not(Eval('state') == 'validated'),
})]
+ @classmethod
+ def create_health_condition(cls, lab_info):
+ """ Create the health condition when specified and
+ validated in the lab test
+ """
+ HealthCondition = Pool().get('gnuhealth.patient.disease')
+ health_condition = []
+
+ vals = {
+ 'name': lab_info.patient.id,
+ 'pathology': lab_info.pathology,
+ 'diagnosed_date': lab_info.date_analysis.date(),
+ 'lab_confirmed': True,
+ 'lab_test': lab_info.id,
+ 'extra_info': lab_info.diagnosis,
+ 'healthprof': lab_info.requestor
+ }
+
+ health_condition.append(vals)
+ HealthCondition.create(health_condition)
+
@classmethod
def create_lab_pol(cls,lab_info):
diff --git a/health/health.py b/health/health.py
--- a/health/health.py
+++ b/health/health.py
@@ -3476,6 +3476,7 @@
'node': condition_info.institution and condition_info.institution.name.rec_name
}
if (condition_info.pathology):
+ vals['health_condition'] = condition_info.pathology
vals['health_condition_text'] = condition_info.pathology.rec_name
vals['health_condition_code'] = condition_info.pathology.code