hdf5/hdf5.spec

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#
# spec file for package hdf5
#
# Copyright (c) 2015 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%if 0%{?sles_version}
%define _mvapich2 1
%endif
%if 0%{?suse_version}
%define _openmpi 1
%endif
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
Name: hdf5
%define libname libhdf5
Version: 1.8.15
Release: 0
%define sonum 10
Summary: Command-line programs for the HDF5 scientific data format
License: BSD-3-Clause
Group: Productivity/Scientific/Other
Url: http://www.hdfgroup.org/HDF5/
Accepting request 238365 from devel:libraries:c_c++ - updated to 1.8.3: - Added an H5free_memory API call. This should be used to free memory that has been allocated by HDF5 API calls. H5Tget_member_name and H5Pget_class_name are two examples. The main motivation for this call is Windows, where it is common for application code and the HDF5 Library to be using different C run-time libraries (CRT). Using the new call ensures that the same CRT handles both the allocation and free. This new function can also be useful in any case where the library uses a different memory manager than the application, such as when a debug memory manager is in use or when the HDF5 Library is wrapped for use in a managed language like Python or Java. Fixes HDFFV-7710, 8519, and 8851. (DER - 2014/04/11) - The Core VFD (aka Memory VFD) can now be configured to track dirty regions in the file and only write out the changed regions on flush/close. Additionally, a "page aggregation" size can be set that will aggregate small writes into larger writes. For example, setting a 1 MiB page aggregation size will logically partition the the in-memory file into 1 MiB pages that will be written out in their entirety if even a single byte is dirtied. The feature is controlled via the new H5Pset/get_core_write_tracking() API call. A new "core_paged" target has been added to the check-vfd target in test/Makefile.am that exercises the feature over all HDF5 VFD-aware tests. (DER - 2014/04/12) - see http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.13-RELEASE.txt for more - modified patches: * hdf5-LD_LIBRARY_PATH.patch OBS-URL: https://build.opensuse.org/request/show/238365 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/hdf5?expand=0&rev=19
2014-06-25 10:48:59 +02:00
Source0: http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-%{version}/src/hdf5-%{version}.tar.bz2
Source1: baselibs.conf
Patch0: hdf5-LD_LIBRARY_PATH.patch
Patch1: hdf5-non_void_return.patch
# not really needed but we want to get noticed if hdf5 doesn' t know our host
Patch2: hdf5-1.8.11-abort_unknown_host_config.patch
%ifarch %arm
Patch4: hdf5-1.8.10-tests-arm.patch
%endif
Patch5: hdf5-ldouble-ppc64le.patch
# PATCH-FIX-UPSTREAM hdf5-cpp-compilation-errors.patch badshah400@gmail.com -- Reverted a change to the H5api_adpt.h that caused compilation errors for the C++ HDF5 applications; patch taken from upstream svn
Patch6: hdf5-cpp-compilation-errors.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: gcc-c++
%if 0%{?suse_version} > 1140
BuildRequires: gcc-fortran
%endif
BuildRequires: krb5-devel
BuildRequires: openssl-devel
BuildRequires: zlib-devel
%if 0%{?suse_version} >= 1110
BuildRequires: fdupes
%endif
%if 0%{?_openmpi}
BuildRequires: openmpi-devel
%endif
%if 0%{?_mvapich2}
BuildRequires: mvapich2-devel
%endif
Requires: %{libname}-%{sonum} = %{version}
Requires: %{libname}_hl%{sonum} = %{version}
%description
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains utility functions for working with HDF5 files.
%package -n %{name}-openmpi
Summary: Command-line programs for the HDF5 scientific data format
Group: Productivity/Scientific/Other
Requires: %{libname}-%{sonum}-openmpi = %{version}
Requires: %{libname}_hl%{sonum}-openmpi = %{version}
%description -n %{name}-openmpi
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains the openmpi version utility functions for working
with HDF5 files.
%package -n %{name}-mvapich2
Summary: Command-line programs for the HDF5 scientific data format
Group: Productivity/Scientific/Other
Requires: %{libname}-%{sonum}-mvapich2 = %{version}
Requires: %{libname}_hl%{sonum}-mvapich2 = %{version}
%description -n %{name}-mvapich2
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains the mvapich2 version utility functions for working
with HDF5 files.
%package -n %{libname}-%{sonum}
Summary: Shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
%description -n %{libname}-%{sonum}
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains the HDF5 runtime libraries.
%package -n %{libname}-%{sonum}-openmpi
Summary: Shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
%description -n %{libname}-%{sonum}-openmpi
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains the openmpi version of the HDF5 runtime libraries.
%package -n %{libname}-%{sonum}-mvapich2
Summary: Shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
%description -n %{libname}-%{sonum}-mvapich2
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains the mvapich2 version of the HDF5 runtime libraries.
%package -n %{libname}_hl%{sonum}
Summary: High-level shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
%description -n %{libname}_hl%{sonum}
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains the the high-level HDF5 runtime libraries.
%package -n %{libname}_hl%{sonum}-openmpi
Summary: High-level shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
%description -n %{libname}_hl%{sonum}-openmpi
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains the openmpi version of the high-level HDF5
runtime libraries.
%package -n %{libname}_hl%{sonum}-mvapich2
Summary: High-level shared libraries for the HDF5 scientific data format
Group: Productivity/Scientific/Other
%description -n %{libname}_hl%{sonum}-mvapich2
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains the mvapich2 version of the high-level HDF5
runtime libraries.
%package devel-data
Summary: Development data files for %{name}
Group: Development/Libraries/Other
%description devel-data
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains generic files needed to create projects that use
any version of HDF5.
%package devel
Summary: Development files for %{name}
Group: Development/Libraries/Other
Requires: %{name} = %{version}
Requires: %{name}-devel-data = %{version}
# Required by Fortran programs?
Requires: %{libname}-%{sonum} = %{version}
Requires: %{libname}_hl%{sonum} = %{version}
%description devel
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains all files needed to create projects that use
HDF5.
%package openmpi-devel
Summary: Development files for %{name}-openmpi
Group: Development/Libraries/Parallel
Requires: %{name}-devel-data = %{version}
Requires: %{name}-openmpi = %{version}
# Required by Fortran programs?
Requires: %{libname}-%{sonum}-openmpi = %{version}
Requires: %{libname}_hl%{sonum}-openmpi = %{version}
%description openmpi-devel
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains all files needed to create projects that use
the openmpi version of HDF5.
%package mvapich2-devel
Summary: Development files for %{name}-mvapich2
Group: Development/Libraries/Parallel
Requires: %{name}-devel-data = %{version}
Requires: %{name}-mvapich2 = %{version}
# Required by Fortran programs?
Requires: %{libname}-%{sonum}-mvapich2 = %{version}
Requires: %{libname}_hl%{sonum}-mvapich2 = %{version}
%description mvapich2-devel
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package contains all files needed to create projects that use
the mvapich2 version of HDF5.
%package devel-static
Summary: Static development files for %{name}
Group: Development/Libraries/Other
Requires: %{name}-devel = %{version}
%description devel-static
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package provides the static libraries for HDF5.
%package openmpi-devel-static
Summary: Static development files for %{name}-openmpi
Group: Development/Libraries/Parallel
Requires: %{name}-openmpi-devel = %{version}
%description openmpi-devel-static
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package provides the static libraries for the openmpi version of HDF5.
%package mvapich2-devel-static
Summary: Static development files for %{name}-mvapich2
Group: Development/Libraries/Parallel
Requires: %{name}-mvapich2-devel = %{version}
%description mvapich2-devel-static
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package provides the static libraries for the mvapich2 version of HDF5.
%package examples
Summary: Examples for %{name}
Group: Documentation/Other
Requires: %{libname}-%{sonum} = %{version}
Requires: %{libname}_hl%{sonum} = %{version}
%description examples
HDF5 is a data model, library, and file format for storing and
managing data. It supports an unlimited variety of datatypes, and
is designed for flexible and efficient I/O and for high volume and
complex data. HDF5 is portable and is extensible, allowing
applications to evolve in their use of HDF5.
The HDF5 technology suite is designed to organize, store, discover,
access, analyze, share, and preserve diverse, complex data in
continuously evolving heterogeneous computing and storage environments.
HDF5 supports all types of data stored digitally, regardless of origin
or size. Petabytes of remote sensing data collected by satellites,
terabytes of computational results from nuclear testing models, and
megabytes of high-resolution MRI brain scans are stored in HDF5 files,
together with metadata necessary for efficient data sharing,
processing, visualization, and archiving.
This package provides examples of HDF5 library use.
%prep
Accepting request 238365 from devel:libraries:c_c++ - updated to 1.8.3: - Added an H5free_memory API call. This should be used to free memory that has been allocated by HDF5 API calls. H5Tget_member_name and H5Pget_class_name are two examples. The main motivation for this call is Windows, where it is common for application code and the HDF5 Library to be using different C run-time libraries (CRT). Using the new call ensures that the same CRT handles both the allocation and free. This new function can also be useful in any case where the library uses a different memory manager than the application, such as when a debug memory manager is in use or when the HDF5 Library is wrapped for use in a managed language like Python or Java. Fixes HDFFV-7710, 8519, and 8851. (DER - 2014/04/11) - The Core VFD (aka Memory VFD) can now be configured to track dirty regions in the file and only write out the changed regions on flush/close. Additionally, a "page aggregation" size can be set that will aggregate small writes into larger writes. For example, setting a 1 MiB page aggregation size will logically partition the the in-memory file into 1 MiB pages that will be written out in their entirety if even a single byte is dirtied. The feature is controlled via the new H5Pset/get_core_write_tracking() API call. A new "core_paged" target has been added to the check-vfd target in test/Makefile.am that exercises the feature over all HDF5 VFD-aware tests. (DER - 2014/04/12) - see http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.13-RELEASE.txt for more - modified patches: * hdf5-LD_LIBRARY_PATH.patch OBS-URL: https://build.opensuse.org/request/show/238365 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/hdf5?expand=0&rev=19
2014-06-25 10:48:59 +02:00
%setup -q
# don't forget to increase sonum, see also baselibs.conf
LT_VERS_INTERFACE=$(sed -n 's/^ *LT_VERS_INTERFACE *= *//p' config/lt_vers.am)
test "%{sonum}" = "${LT_VERS_INTERFACE}" || exit 1
%patch0 -p1 -b .LD_LIBRARY_PATH
%patch1 -p0 -b .non_void_return
%patch2 -p0 -b .abort_unknown_host_config
%ifarch %arm
%patch4 -p0 -b .tests-arm
%endif
%patch5 -p1
%patch6 -p0
echo "prepare parallel builds: %_mpi"
for build_dir in build %_mpi; do
mkdir $build_dir
ln -s ../configure $build_dir
done
%build
export CC=gcc
export CXX=g++
export F9X=gfortran
# workaround for known gcc issue, see RELEASE.txt
if gcc --version |grep -q " 4\.[68]"; then
export CFLAGS="${RPM_OPT_FLAGS/-O2/-O0}"
fi
%ifarch %arm
# we want to have useful H5_CFLAGS on arm too
test -e config/linux-gnueabi || cp config/linux-gnu config/linux-gnueabi
%endif
# NOTE: --enable-unsupported is required when --enable-fortran
# and/or --enable-cxx is enabled along with --enable-threadsafe.
# Building with thise combination results in thread-safe C
# libraries and non-thread-safe fotran and/or C++ libraries. So
# you have to explicitly allow building the thread-safe C
# library and the non-thread-safe C++ and fortran libraries in
# order to make sure people don't assume that their fotran or
# C++ code is thread-safe. Since our users are going to be
# accessing this through other programs, this doesn't matter.
pushd build
%configure \
--docdir=%{_docdir}/%{name} \
--disable-dependency-tracking \
%if 0%{?suse_version} > 1140
--enable-fortran \
--enable-fortran2003 \
%endif
--enable-unsupported \
--enable-hl \
--enable-shared \
--enable-cxx \
--enable-threadsafe \
--with-pthread
make V=1 %{?_smp_mflags}
popd
for mpi in %_mpi;
do
pushd $mpi
export CC="%{_libdir}/mpi/gcc/$mpi/bin/mpicc"
export FC="%{_libdir}/mpi/gcc/$mpi/bin/mpif90"
export F77="%{_libdir}/mpi/gcc/$mpi/bin/mpif77"
export LD_LIBRARY_PATH="%{_libdir}/mpi/gcc/$mpi/%_lib"
%configure \
--docdir=%{_docdir}/%{name} \
--prefix=%{_libdir}/mpi/gcc/$mpi \
--exec-prefix=%{_libdir}/mpi/gcc/$mpi \
--bindir=%{_libdir}/mpi/gcc/$mpi/bin \
--libdir=%{_libdir}/mpi/gcc/$mpi/%_lib \
--datadir=%{_libdir}/mpi/gcc/$mpi/share \
--includedir=%{_libdir}/mpi/gcc/$mpi/include \
--disable-dependency-tracking \
%if 0%{?suse_version} > 1140
--enable-fortran \
--enable-fortran2003 \
%endif
--enable-unsupported \
--enable-hl \
--enable-shared \
--enable-threadsafe \
--enable-parallel \
--with-pthread
make %{?_smp_mflags}
popd
done
%install
# install serial and parallel builds, (the serial one will win in case of
# duplicate files)
for build_dir in %_mpi build; do
make install DESTDIR="%buildroot" -C "$build_dir"
done
find "%buildroot/%{_libdir}" -type f -name "*.la" | xargs rm -f
find %{buildroot}%{_datadir}/hdf5_examples -type f \
| grep -v ".sh$" | xargs chmod 644
# delete examples from parallel builds
rm -rf %{buildroot}%{_libdir}/mpi/gcc/*/share/hdf5_examples
%if 0%{?suse_version} >= 1110
%fdupes -s %{buildroot}/%{_datadir}
%endif
# rpm macro for version checking
mkdir -p %{buildroot}%{_sysconfdir}/rpm
cat > %{buildroot}%{_sysconfdir}/rpm/macros.hdf5 <<EOF
#
# RPM macros for hdf5 packaging
#
%_hdf5_sonum %{sonum}
%_hdf5_version %{version}
EOF
%check
%if 0%{?qemu_user_space_build}
# default timeout is 1200 seconds
export HDF5_ALARM_SECONDS=3600
%endif
make -C build check
# ignore errors for parallel builds
export HDF5_Make_Ignore=yes
for mpi in %_mpi; do
make -C $mpi check
done
%post -n %{libname}-%{sonum} -p /sbin/ldconfig
%postun -n %{libname}-%{sonum} -p /sbin/ldconfig
%post -n %{libname}_hl%{sonum} -p /sbin/ldconfig
%postun -n %{libname}_hl%{sonum} -p /sbin/ldconfig
%if 0%{?_openmpi}
%post -n %{libname}-%{sonum}-openmpi -p /sbin/ldconfig
%postun -n %{libname}-%{sonum}-openmpi -p /sbin/ldconfig
%post -n %{libname}_hl%{sonum}-openmpi -p /sbin/ldconfig
%postun -n %{libname}_hl%{sonum}-openmpi -p /sbin/ldconfig
%endif
%if 0%{?_mvapich2}
%post -n %{libname}-%{sonum}-mvapich2 -p /sbin/ldconfig
%postun -n %{libname}-%{sonum}-mvapich2 -p /sbin/ldconfig
%post -n %{libname}_hl%{sonum}-mvapich2 -p /sbin/ldconfig
%postun -n %{libname}_hl%{sonum}-mvapich2 -p /sbin/ldconfig
%endif
%files
%defattr(-,root,root)
%{_bindir}/gif2h5
%{_bindir}/h52gif
%{_bindir}/h5copy
%{_bindir}/h5debug
%{_bindir}/h5diff
%{_bindir}/h5dump
%{_bindir}/h5import
%{_bindir}/h5jam
%{_bindir}/h5ls
%{_bindir}/h5mkgrp
%{_bindir}/h5perf_serial
%{_bindir}/h5redeploy
%{_bindir}/h5repack
%{_bindir}/h5repart
%{_bindir}/h5stat
%{_bindir}/h5unjam
%files -n %{libname}-%{sonum}
%defattr(-,root,root)
%doc COPYING ACKNOWLEDGMENTS README.txt
%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt
%doc release_docs/HISTORY-1_8.txt
%doc release_docs/RELEASE.txt
%defattr(0755,root,root)
%{_libdir}/libhdf5.so.*
%{_libdir}/libhdf5_cpp.so.*
%if 0%{?suse_version} > 1140
%{_libdir}/libhdf5_fortran.so.*
%endif
%files -n libhdf5_hl%{sonum}
%defattr(0755,root,root)
%{_libdir}/libhdf5_hl.so.*
%{_libdir}/libhdf5_hl_cpp.so.*
%if 0%{?suse_version} > 1140
%{_libdir}/libhdf5hl_fortran.so.*
%endif
%files devel-data
%defattr(-,root,root,-)
%config(noreplace) %{_sysconfdir}/rpm/macros.hdf5
%files devel
%defattr(-,root,root)
%{_bindir}/h5c++
%{_bindir}/h5cc
%if 0%{?suse_version} > 1140
%{_bindir}/h5fc
%endif
%{_includedir}/*.h
%{_libdir}/*.so
%{_libdir}/*.settings
%if 0%{?suse_version} > 1140
%{_includedir}/*.mod
%endif
%files devel-static
%defattr(-,root,root)
%{_libdir}/*.a
%files examples
%defattr(-,root,root)
%{_datadir}/hdf5_examples
%if 0%{?_openmpi}
%files -n %{name}-openmpi
%defattr(-,root,root)
%{_libdir}/mpi/gcc/openmpi/bin/gif2h5
%{_libdir}/mpi/gcc/openmpi/bin/h52gif
%{_libdir}/mpi/gcc/openmpi/bin/h5copy
%{_libdir}/mpi/gcc/openmpi/bin/h5debug
%{_libdir}/mpi/gcc/openmpi/bin/h5diff
%{_libdir}/mpi/gcc/openmpi/bin/h5dump
%{_libdir}/mpi/gcc/openmpi/bin/h5import
%{_libdir}/mpi/gcc/openmpi/bin/h5jam
%{_libdir}/mpi/gcc/openmpi/bin/h5ls
%{_libdir}/mpi/gcc/openmpi/bin/h5mkgrp
%{_libdir}/mpi/gcc/openmpi/bin/h5perf
%{_libdir}/mpi/gcc/openmpi/bin/h5perf_serial
%{_libdir}/mpi/gcc/openmpi/bin/h5redeploy
%{_libdir}/mpi/gcc/openmpi/bin/h5repack
%{_libdir}/mpi/gcc/openmpi/bin/h5repart
%{_libdir}/mpi/gcc/openmpi/bin/h5stat
%{_libdir}/mpi/gcc/openmpi/bin/h5unjam
%{_libdir}/mpi/gcc/openmpi/bin/ph5diff
%files -n %{libname}-%{sonum}-openmpi
%defattr(-,root,root)
%doc COPYING ACKNOWLEDGMENTS README.txt
%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt
%doc release_docs/HISTORY-1_8.txt
%doc release_docs/RELEASE.txt
%defattr(0755,root,root)
%{_libdir}/mpi/gcc/openmpi/%_lib/libhdf5.so.*
%if 0%{?suse_version} > 1140
%{_libdir}/mpi/gcc/openmpi/%_lib/libhdf5_fortran.so.*
%endif
%files -n libhdf5_hl%{sonum}-openmpi
%defattr(0755,root,root)
%{_libdir}/mpi/gcc/openmpi/%_lib/libhdf5_hl.so.*
%if 0%{?suse_version} > 1140
%{_libdir}/mpi/gcc/openmpi/%_lib/libhdf5hl_fortran.so.*
%endif
%files openmpi-devel
%defattr(-,root,root)
%{_libdir}/mpi/gcc/openmpi/bin/h5pcc
%if 0%{?suse_version} > 1140
%{_libdir}/mpi/gcc/openmpi/bin/h5pfc
%endif
%{_libdir}/mpi/gcc/openmpi/include/*.h
%{_libdir}/mpi/gcc/openmpi/%_lib/*.so
%{_libdir}/mpi/gcc/openmpi/%_lib/*.settings
%if 0%{?suse_version} > 1140
%{_libdir}/mpi/gcc/openmpi/include/*.mod
%endif
%files openmpi-devel-static
%defattr(-,root,root)
%{_libdir}/mpi/gcc/openmpi/%_lib/*.a
%endif
%if 0%{?_mvapich2}
%files -n %{name}-mvapich2
%defattr(-,root,root)
%{_libdir}/mpi/gcc/mvapich2/bin/gif2h5
%{_libdir}/mpi/gcc/mvapich2/bin/h52gif
%{_libdir}/mpi/gcc/mvapich2/bin/h5copy
%{_libdir}/mpi/gcc/mvapich2/bin/h5debug
%{_libdir}/mpi/gcc/mvapich2/bin/h5diff
%{_libdir}/mpi/gcc/mvapich2/bin/h5dump
%{_libdir}/mpi/gcc/mvapich2/bin/h5import
%{_libdir}/mpi/gcc/mvapich2/bin/h5jam
%{_libdir}/mpi/gcc/mvapich2/bin/h5ls
%{_libdir}/mpi/gcc/mvapich2/bin/h5mkgrp
%{_libdir}/mpi/gcc/mvapich2/bin/h5perf
%{_libdir}/mpi/gcc/mvapich2/bin/h5perf_serial
%{_libdir}/mpi/gcc/mvapich2/bin/h5redeploy
%{_libdir}/mpi/gcc/mvapich2/bin/h5repack
%{_libdir}/mpi/gcc/mvapich2/bin/h5repart
%{_libdir}/mpi/gcc/mvapich2/bin/h5stat
%{_libdir}/mpi/gcc/mvapich2/bin/h5unjam
%{_libdir}/mpi/gcc/mvapich2/bin/ph5diff
%files -n %{libname}-%{sonum}-mvapich2
%defattr(-,root,root)
%doc COPYING ACKNOWLEDGMENTS README.txt
%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt
%doc release_docs/HISTORY-1_8.txt
%doc release_docs/RELEASE.txt
%defattr(0755,root,root)
%{_libdir}/mpi/gcc/mvapich2/%_lib/libhdf5.so.*
%if 0%{?suse_version} > 1140
%{_libdir}/mpi/gcc/mvapich2/%_lib/libhdf5_fortran.so.*
%endif
%files -n libhdf5_hl%{sonum}-mvapich2
%defattr(0755,root,root)
%{_libdir}/mpi/gcc/mvapich2/%_lib/libhdf5_hl.so.*
%if 0%{?suse_version} > 1140
%{_libdir}/mpi/gcc/mvapich2/%_lib/libhdf5hl_fortran.so.*
%endif
%files mvapich2-devel
%defattr(-,root,root)
%{_libdir}/mpi/gcc/mvapich2/bin/h5pcc
%if 0%{?suse_version} > 1140
%{_libdir}/mpi/gcc/mvapich2/bin/h5pfc
%endif
%{_libdir}/mpi/gcc/mvapich2/include/*.h
%{_libdir}/mpi/gcc/mvapich2/%_lib/*.so
%{_libdir}/mpi/gcc/mvapich2/%_lib/*.settings
%if 0%{?suse_version} > 1140
%{_libdir}/mpi/gcc/mvapich2/include/*.mod
%endif
%files mvapich2-devel-static
%defattr(-,root,root)
%{_libdir}/mpi/gcc/mvapich2/%_lib/*.a
%endif
%changelog