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hdf5/Disable-phdf5-tests.patch

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Accepting request 539811 from home:eeich:hpc_alt - Update to 1.10.1: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt - Fix-warnings-for-missing-returns.patch: replace: hdf5-non_void_return.patch - PPC64LE-Fix-long-double-handling.patch: replace: hdf5-ldouble-ppc64le.patch - Disable-phdf5-tests.patch: replace: hdf5_disable_testphdf5.patch - Disabling validation tests for the MPI variant for now as they seem to cause issues in OBS. OBS-URL: https://build.opensuse.org/request/show/539811 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=55
2017-11-08 11:04:37 +01:00
From: Egbert Eich <eich@suse.com>
Accepting request 649960 from home:eeich:branches:science - Update to 1.10.4: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.4/src/hdf5-1.10.4-RELEASE.txt * Update Disable-phdf5-tests.patch * Replace and update hdf5-buildcompare.patch by hdf5-Remove-timestamps-from-binaries.patch - Remove lib*_cpp and lib*_hl_cpp dependencies for MPI for the time being. OBS-URL: https://build.opensuse.org/request/show/649960 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=86
2018-11-17 21:29:11 +01:00
Date: Sat Nov 17 20:11:13 2018 +0100
Subject: Disable phdf5 tests
Patch-mainline: never
Git-commit: 16d758d17d9c49ab9e34d510675929b9ccc8be5a
Accepting request 539811 from home:eeich:hpc_alt - Update to 1.10.1: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt - Fix-warnings-for-missing-returns.patch: replace: hdf5-non_void_return.patch - PPC64LE-Fix-long-double-handling.patch: replace: hdf5-ldouble-ppc64le.patch - Disable-phdf5-tests.patch: replace: hdf5_disable_testphdf5.patch - Disabling validation tests for the MPI variant for now as they seem to cause issues in OBS. OBS-URL: https://build.opensuse.org/request/show/539811 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=55
2017-11-08 11:04:37 +01:00
References:
Accepting request 649960 from home:eeich:branches:science - Update to 1.10.4: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.4/src/hdf5-1.10.4-RELEASE.txt * Update Disable-phdf5-tests.patch * Replace and update hdf5-buildcompare.patch by hdf5-Remove-timestamps-from-binaries.patch - Remove lib*_cpp and lib*_hl_cpp dependencies for MPI for the time being. OBS-URL: https://build.opensuse.org/request/show/649960 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=86
2018-11-17 21:29:11 +01:00
Signed-off-by: Egbert Eich <eich@suse.com>
Signed-off-by: Egbert Eich <eich@suse.de>
Accepting request 539811 from home:eeich:hpc_alt - Update to 1.10.1: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt - Fix-warnings-for-missing-returns.patch: replace: hdf5-non_void_return.patch - PPC64LE-Fix-long-double-handling.patch: replace: hdf5-ldouble-ppc64le.patch - Disable-phdf5-tests.patch: replace: hdf5_disable_testphdf5.patch - Disabling validation tests for the MPI variant for now as they seem to cause issues in OBS. OBS-URL: https://build.opensuse.org/request/show/539811 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=55
2017-11-08 11:04:37 +01:00
---
Accepting request 1173662 from home:badshah400:branches:science * Update to version 1.12.3. * Drop upstreamed patches: Remove-duplicate-code.patch, H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch, H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch, Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch, Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch, Compound-datatypes-may-not-have-members-of-size-0.patch, H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch, Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch * New BuildRequires: hostname. * Work around an sed hack in upstream configure file by dropping "-Werror=return-type" from RPM %optflags. OBS-URL: https://build.opensuse.org/request/show/1173662 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=174
2024-05-14 17:19:49 +02:00
Index: hdf5-1.12.3/testpar/CMakeTests.cmake
Accepting request 726430 from home:anag:branches:science - Update to version 1.10.5: * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5-RELEASE.txt - Bump fortran library soname, sonum_F from 100 to 102. - Adjust library installation path, use %hpc_prefix/lib64 in x86_64 and %hpc_libdir in all other cases - Patches refreshed: * hdf5-LD_LIBRARY_PATH.patch * hdf5-1.8.11-abort_unknown_host_config.patch * PPC64LE-Fix-long-double-handling.patch * hdf5-Remove-timestamps-from-binaries.patch * Disable-phdf5-tests.patch - Patch disabled, upstream have changed the file that was being patched, while it could be ported, it's unknown if this patch is still needed. * hdf5-mpi.patch - Patch removed, merged upstream * 0001-Fix-return-value-in-test_libver_bounds_open.patch OBS-URL: https://build.opensuse.org/request/show/726430 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=111
2019-09-03 09:57:43 +02:00
===================================================================
Accepting request 1173662 from home:badshah400:branches:science * Update to version 1.12.3. * Drop upstreamed patches: Remove-duplicate-code.patch, H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch, H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch, Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch, Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch, Compound-datatypes-may-not-have-members-of-size-0.patch, H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch, Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch * New BuildRequires: hostname. * Work around an sed hack in upstream configure file by dropping "-Werror=return-type" from RPM %optflags. OBS-URL: https://build.opensuse.org/request/show/1173662 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=174
2024-05-14 17:19:49 +02:00
--- hdf5-1.12.3.orig/testpar/CMakeTests.cmake
+++ hdf5-1.12.3/testpar/CMakeTests.cmake
@@ -49,7 +49,7 @@ foreach (skiptest ${SKIP_tests})
Accepting request 848496 from home:anag:branches:science - Update to version 1.10.7 * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.6/src/hdf5-1.10.6-RELEASE.txt * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7-RELEASE.txt - Security bugs fixed: * CVE-2018-13870: heap-based buffer over-read in the function H5O_link_decode in H5Olink.c (bsc#1101493) * CVE-2018-13869: memcpy parameter overlap in the function H5O_link_decode in H5Olink.c (bsc#1101495) * CVE-2018-17438: A SIGFPE signal is raised in the function H5D__select_io() of H5Dselect.c in the HDF HDF5 through 1.10.3 library during an attempted parse of a crafted HDF file, because of incorrect protection against division (bsc#1109570) * CVE-2018-17435: A heap-based buffer over-read in H5O_attr_decode() in H5Oattr.c in the HDF HDF5 through 1.10.3 library allows attackers to cause a denial of service via a crafted HDF5 file. (bsc#1109567) - Refresh patches - Security bugs fixed: * CVE-2018-17233: A SIGFPE signal is raised in the function H5D__create_chunk_file_map_hyper. (bsc#1109166) * CVE-2018-17434: Memory leak in the H5O__chunk_deserialize() function in H5Ocache.c (bsc#1109167) * CVE-2018-17437: A SIGFPE signal is raised in the function H5D__chunk_set_info_real. (bsc#1109168) - Security bugs fixed: * CVE-2017-17505: NULL pointer dereference in the function H5O_pline_decode allowing for DoS via crafted file (bsc#1072087) * CVE-2017-17506: Out of bounds read in the function OBS-URL: https://build.opensuse.org/request/show/848496 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=139
2020-11-14 12:11:35 +01:00
set (SKIP_testphdf5 "${SKIP_testphdf5};-x;${skiptest}")
endforeach ()
Accepting request 539811 from home:eeich:hpc_alt - Update to 1.10.1: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt - Fix-warnings-for-missing-returns.patch: replace: hdf5-non_void_return.patch - PPC64LE-Fix-long-double-handling.patch: replace: hdf5-ldouble-ppc64le.patch - Disable-phdf5-tests.patch: replace: hdf5_disable_testphdf5.patch - Disabling validation tests for the MPI variant for now as they seem to cause issues in OBS. OBS-URL: https://build.opensuse.org/request/show/539811 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=55
2017-11-08 11:04:37 +01:00
Accepting request 726430 from home:anag:branches:science - Update to version 1.10.5: * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5-RELEASE.txt - Bump fortran library soname, sonum_F from 100 to 102. - Adjust library installation path, use %hpc_prefix/lib64 in x86_64 and %hpc_libdir in all other cases - Patches refreshed: * hdf5-LD_LIBRARY_PATH.patch * hdf5-1.8.11-abort_unknown_host_config.patch * PPC64LE-Fix-long-double-handling.patch * hdf5-Remove-timestamps-from-binaries.patch * Disable-phdf5-tests.patch - Patch disabled, upstream have changed the file that was being patched, while it could be ported, it's unknown if this patch is still needed. * hdf5-mpi.patch - Patch removed, merged upstream * 0001-Fix-return-value-in-test_libver_bounds_open.patch OBS-URL: https://build.opensuse.org/request/show/726430 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=111
2019-09-03 09:57:43 +02:00
-add_test (NAME MPI_TEST_testphdf5 COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:testphdf5> ${MPIEXEC_POSTFLAGS} ${SKIP_testphdf5})
Accepting request 848496 from home:anag:branches:science - Update to version 1.10.7 * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.6/src/hdf5-1.10.6-RELEASE.txt * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.7/src/hdf5-1.10.7-RELEASE.txt - Security bugs fixed: * CVE-2018-13870: heap-based buffer over-read in the function H5O_link_decode in H5Olink.c (bsc#1101493) * CVE-2018-13869: memcpy parameter overlap in the function H5O_link_decode in H5Olink.c (bsc#1101495) * CVE-2018-17438: A SIGFPE signal is raised in the function H5D__select_io() of H5Dselect.c in the HDF HDF5 through 1.10.3 library during an attempted parse of a crafted HDF file, because of incorrect protection against division (bsc#1109570) * CVE-2018-17435: A heap-based buffer over-read in H5O_attr_decode() in H5Oattr.c in the HDF HDF5 through 1.10.3 library allows attackers to cause a denial of service via a crafted HDF5 file. (bsc#1109567) - Refresh patches - Security bugs fixed: * CVE-2018-17233: A SIGFPE signal is raised in the function H5D__create_chunk_file_map_hyper. (bsc#1109166) * CVE-2018-17434: Memory leak in the H5O__chunk_deserialize() function in H5Ocache.c (bsc#1109167) * CVE-2018-17437: A SIGFPE signal is raised in the function H5D__chunk_set_info_real. (bsc#1109168) - Security bugs fixed: * CVE-2017-17505: NULL pointer dereference in the function H5O_pline_decode allowing for DoS via crafted file (bsc#1072087) * CVE-2017-17506: Out of bounds read in the function OBS-URL: https://build.opensuse.org/request/show/848496 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=139
2020-11-14 12:11:35 +01:00
+##add_test (NAME MPI_TEST_testphdf5 COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_NUMPROC_FLAG} ${MPIEXEC_MAX_NUMPROCS} ${MPIEXEC_PREFLAGS} $<TARGET_FILE:testphdf5> ${MPIEXEC_POSTFLAGS} ${SKIP_testphdf5})
Accepting request 726430 from home:anag:branches:science - Update to version 1.10.5: * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5-RELEASE.txt - Bump fortran library soname, sonum_F from 100 to 102. - Adjust library installation path, use %hpc_prefix/lib64 in x86_64 and %hpc_libdir in all other cases - Patches refreshed: * hdf5-LD_LIBRARY_PATH.patch * hdf5-1.8.11-abort_unknown_host_config.patch * PPC64LE-Fix-long-double-handling.patch * hdf5-Remove-timestamps-from-binaries.patch * Disable-phdf5-tests.patch - Patch disabled, upstream have changed the file that was being patched, while it could be ported, it's unknown if this patch is still needed. * hdf5-mpi.patch - Patch removed, merged upstream * 0001-Fix-return-value-in-test_libver_bounds_open.patch OBS-URL: https://build.opensuse.org/request/show/726430 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=111
2019-09-03 09:57:43 +02:00
set_tests_properties (MPI_TEST_testphdf5 PROPERTIES
FIXTURES_REQUIRED par_clear_testphdf5
ENVIRONMENT "HDF5_ALARM_SECONDS=3600;srcdir=${HDF5_TEST_PAR_BINARY_DIR}"
Accepting request 1173662 from home:badshah400:branches:science * Update to version 1.12.3. * Drop upstreamed patches: Remove-duplicate-code.patch, H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch, H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch, Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch, Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch, Compound-datatypes-may-not-have-members-of-size-0.patch, H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch, Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch * New BuildRequires: hostname. * Work around an sed hack in upstream configure file by dropping "-Werror=return-type" from RPM %optflags. OBS-URL: https://build.opensuse.org/request/show/1173662 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=174
2024-05-14 17:19:49 +02:00
Index: hdf5-1.12.3/testpar/Makefile.am
Accepting request 726430 from home:anag:branches:science - Update to version 1.10.5: * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5-RELEASE.txt - Bump fortran library soname, sonum_F from 100 to 102. - Adjust library installation path, use %hpc_prefix/lib64 in x86_64 and %hpc_libdir in all other cases - Patches refreshed: * hdf5-LD_LIBRARY_PATH.patch * hdf5-1.8.11-abort_unknown_host_config.patch * PPC64LE-Fix-long-double-handling.patch * hdf5-Remove-timestamps-from-binaries.patch * Disable-phdf5-tests.patch - Patch disabled, upstream have changed the file that was being patched, while it could be ported, it's unknown if this patch is still needed. * hdf5-mpi.patch - Patch removed, merged upstream * 0001-Fix-return-value-in-test_libver_bounds_open.patch OBS-URL: https://build.opensuse.org/request/show/726430 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=111
2019-09-03 09:57:43 +02:00
===================================================================
Accepting request 1173662 from home:badshah400:branches:science * Update to version 1.12.3. * Drop upstreamed patches: Remove-duplicate-code.patch, H5O__pline_decode-Make-more-resilient-to-out-of-bounds-read.patch, H5O_dtype_decode_helper-Parent-of-enum-needs-to-have-same-size-as-enum-itself.patch, Pass-compact-chunk-size-info-to-ensure-requested-elements-are-within-bounds.patch, Make-sure-info-block-for-external-links-has-at-least-3-bytes.patch, Compound-datatypes-may-not-have-members-of-size-0.patch, H5IMget_image_info-H5Sget_simple_extent_dims-does-not-exceed-array-size.patch, Check-for-overflow-when-calculating-on-disk-attribute-data-size-2459.patch * New BuildRequires: hostname. * Work around an sed hack in upstream configure file by dropping "-Werror=return-type" from RPM %optflags. OBS-URL: https://build.opensuse.org/request/show/1173662 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=174
2024-05-14 17:19:49 +02:00
--- hdf5-1.12.3.orig/testpar/Makefile.am
+++ hdf5-1.12.3/testpar/Makefile.am
@@ -29,7 +29,7 @@ check_SCRIPTS = $(TEST_SCRIPT_PARA)
Accepting request 539811 from home:eeich:hpc_alt - Update to 1.10.1: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt - Fix-warnings-for-missing-returns.patch: replace: hdf5-non_void_return.patch - PPC64LE-Fix-long-double-handling.patch: replace: hdf5-ldouble-ppc64le.patch - Disable-phdf5-tests.patch: replace: hdf5_disable_testphdf5.patch - Disabling validation tests for the MPI variant for now as they seem to cause issues in OBS. OBS-URL: https://build.opensuse.org/request/show/539811 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=55
2017-11-08 11:04:37 +01:00
# Test programs. These are our main targets.
#
Accepting request 992096 from home:badshah400:hdf5 - Update to version 1.12.2 - Minor re-base of existing patches to apply cleanly: - Drop upstreamed patch: hdf5-1.10.8-pr1494-fix-release-check-version.patch. OBS-URL: https://build.opensuse.org/request/show/992096 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=155
2022-08-11 21:19:20 +02:00
-TEST_PROG_PARA=t_mpi t_bigio testphdf5 t_cache t_cache_image t_pread t_pshutdown t_prestart t_init_term t_shapesame t_filters_parallel t_2Gio
+TEST_PROG_PARA=t_mpi t_bigio t_cache t_cache_image t_pread t_pshutdown t_prestart t_init_term t_shapesame t_filters_parallel t_2Gio
Accepting request 539811 from home:eeich:hpc_alt - Update to 1.10.1: https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1-RELEASE.txt - Fix-warnings-for-missing-returns.patch: replace: hdf5-non_void_return.patch - PPC64LE-Fix-long-double-handling.patch: replace: hdf5-ldouble-ppc64le.patch - Disable-phdf5-tests.patch: replace: hdf5_disable_testphdf5.patch - Disabling validation tests for the MPI variant for now as they seem to cause issues in OBS. OBS-URL: https://build.opensuse.org/request/show/539811 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=55
2017-11-08 11:04:37 +01:00
Accepting request 726430 from home:anag:branches:science - Update to version 1.10.5: * https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5-RELEASE.txt - Bump fortran library soname, sonum_F from 100 to 102. - Adjust library installation path, use %hpc_prefix/lib64 in x86_64 and %hpc_libdir in all other cases - Patches refreshed: * hdf5-LD_LIBRARY_PATH.patch * hdf5-1.8.11-abort_unknown_host_config.patch * PPC64LE-Fix-long-double-handling.patch * hdf5-Remove-timestamps-from-binaries.patch * Disable-phdf5-tests.patch - Patch disabled, upstream have changed the file that was being patched, while it could be ported, it's unknown if this patch is still needed. * hdf5-mpi.patch - Patch removed, merged upstream * 0001-Fix-return-value-in-test_libver_bounds_open.patch OBS-URL: https://build.opensuse.org/request/show/726430 OBS-URL: https://build.opensuse.org/package/show/science/hdf5?expand=0&rev=111
2019-09-03 09:57:43 +02:00
# t_pflush1 and t_pflush2 are used by testpflush.sh
check_PROGRAMS = $(TEST_PROG_PARA) t_pflush1 t_pflush2
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