Accepting request 107061 from devel:libraries:c_c++
Fixed the rpmlint warning for the license. Changed from BSD to BSD-3-Clause. OBS-URL: https://build.opensuse.org/request/show/107061 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/hdf5?expand=0&rev=1
This commit is contained in:
Stephan Kulow
Git OBS Bridge
commit
70208ce99f
23
.gitattributes
vendored
Normal file
23
.gitattributes
vendored
Normal file
@ -0,0 +1,23 @@
|
|||||||
|
## Default LFS
|
||||||
|
*.7z filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.bsp filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.bz2 filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.gem filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.gz filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.jar filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.lz filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.lzma filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.obscpio filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.oxt filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.pdf filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.png filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.rpm filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.tbz filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.tbz2 filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.tgz filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.ttf filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.txz filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.whl filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.xz filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.zip filter=lfs diff=lfs merge=lfs -text
|
||||||
|
*.zst filter=lfs diff=lfs merge=lfs -text
|
||||||
1
.gitignore
vendored
Normal file
1
.gitignore
vendored
Normal file
@ -0,0 +1 @@
|
|||||||
|
.osc
|
||||||
10
h5comp
Normal file
10
h5comp
Normal file
@ -0,0 +1,10 @@
|
|||||||
|
#!/bin/bash
|
||||||
|
|
||||||
|
ARCH=$(uname -m)
|
||||||
|
|
||||||
|
case $ARCH in
|
||||||
|
x86_64 | ppc64 | ia64 | s390 ) BITS=64;;
|
||||||
|
* ) BITS=32;;
|
||||||
|
esac
|
||||||
|
|
||||||
|
exec $0-${BITS} "$@"
|
||||||
3
hdf5-1.8.8.tar.bz2
Normal file
3
hdf5-1.8.8.tar.bz2
Normal file
@ -0,0 +1,3 @@
|
|||||||
|
version https://git-lfs.github.com/spec/v1
|
||||||
|
oid sha256:b0ebb0b5478c6c0427631d4ad08f96e39f1b09fde615aa98d2a1b8fb7f6dced3
|
||||||
|
size 5827394
|
||||||
33
hdf5-LD_LIBRARY_PATH.patch
Normal file
33
hdf5-LD_LIBRARY_PATH.patch
Normal file
@ -0,0 +1,33 @@
|
|||||||
|
diff -up hdf5-1.8.8/configure.LD_LIBRARY_PATH hdf5-1.8.8/configure
|
||||||
|
--- hdf5-1.8.8/configure.LD_LIBRARY_PATH 2011-11-16 11:21:54.511269486 -0700
|
||||||
|
+++ hdf5-1.8.8/configure 2011-11-16 11:28:18.673392600 -0700
|
||||||
|
@@ -26746,8 +26746,6 @@ $as_echo_n "checking how to print long l
|
||||||
|
if ${hdf5_cv_printf_ll+:} false; then :
|
||||||
|
$as_echo_n "(cached) " >&6
|
||||||
|
else
|
||||||
|
- LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo $AM_LDFLAGS $LDFLAGS | sed -e 's/-L/:/g' -e 's/ //g'`"
|
||||||
|
-export LD_LIBRARY_PATH
|
||||||
|
|
||||||
|
for hdf5_cv_printf_ll in l ll L q unknown; do
|
||||||
|
if test "$cross_compiling" = yes; then :
|
||||||
|
diff -up hdf5-1.8.8/src/Makefile.in.LD_LIBRARY_PATH hdf5-1.8.8/src/Makefile.in
|
||||||
|
--- hdf5-1.8.8/src/Makefile.in.LD_LIBRARY_PATH 2011-11-15 08:13:54.000000000 -0700
|
||||||
|
+++ hdf5-1.8.8/src/Makefile.in 2011-11-16 11:43:42.938914069 -0700
|
||||||
|
@@ -1267,8 +1267,6 @@ help:
|
||||||
|
# Remove the generated .c file if errors occur unless HDF5_Make_Ignore
|
||||||
|
# is set to ignore the error.
|
||||||
|
H5Tinit.c: H5detect$(EXEEXT)
|
||||||
|
- LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) | \
|
||||||
|
- sed -e 's/-L/:/g' -e 's/ //g'`" \
|
||||||
|
$(RUNSERIAL) ./H5detect$(EXEEXT) > $@ || \
|
||||||
|
(test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
|
||||||
|
($(RM) $@ ; exit 1)
|
||||||
|
@@ -1279,8 +1277,6 @@ H5Tinit.c: H5detect$(EXEEXT)
|
||||||
|
# Remove the generated .c file if errors occur unless HDF5_Make_Ignore
|
||||||
|
# is set to ignore the error.
|
||||||
|
H5lib_settings.c: H5make_libsettings$(EXEEXT) libhdf5.settings
|
||||||
|
- LD_LIBRARY_PATH="$$LD_LIBRARY_PATH`echo $(LDFLAGS) | \
|
||||||
|
- sed -e 's/-L/:/g' -e 's/ //g'`" \
|
||||||
|
$(RUNSERIAL) ./H5make_libsettings$(EXEEXT) > $@ || \
|
||||||
|
(test $$HDF5_Make_Ignore && echo "*** Error ignored") || \
|
||||||
|
($(RM) $@ ; exit 1)
|
||||||
50
hdf5-non_void_return.patch
Normal file
50
hdf5-non_void_return.patch
Normal file
@ -0,0 +1,50 @@
|
|||||||
|
Index: hl/src/H5LTanalyze.l
|
||||||
|
===================================================================
|
||||||
|
--- hl/src/H5LTanalyze.l.orig 2011-11-27 14:19:17.000000000 +0100
|
||||||
|
+++ hl/src/H5LTanalyze.l 2011-11-27 14:20:12.619164660 +0100
|
||||||
|
@@ -184,6 +184,7 @@ int my_yyinput(char *buf, int max_size)
|
||||||
|
int H5LTyyerror(char *msg)
|
||||||
|
{
|
||||||
|
printf("ERROR: %s before \"%s\".\n", msg, yytext);
|
||||||
|
+ return (0); // return from non void fix
|
||||||
|
}
|
||||||
|
|
||||||
|
int yywrap()
|
||||||
|
Index: test/dt_arith.c
|
||||||
|
===================================================================
|
||||||
|
--- test/dt_arith.c.orig 2011-11-27 14:22:13.000000000 +0100
|
||||||
|
+++ test/dt_arith.c 2011-11-27 14:22:21.908435252 +0100
|
||||||
|
@@ -3470,6 +3470,7 @@ error:
|
||||||
|
else if(run_test==TEST_DENORM || run_test==TEST_SPECIAL)
|
||||||
|
return 1;
|
||||||
|
#endif
|
||||||
|
+ return 1; // return from non void fix
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
Index: tools/h5diff/h5diff_common.c
|
||||||
|
===================================================================
|
||||||
|
--- tools/h5diff/h5diff_common.c.orig 2011-11-07 23:11:35.000000000 +0100
|
||||||
|
+++ tools/h5diff/h5diff_common.c 2011-11-27 14:23:49.105943847 +0100
|
||||||
|
@@ -69,6 +69,7 @@ static check_options(diff_opt_t* options
|
||||||
|
printf("Try '-h' or '--help' option for more information or see the %s entry in the 'HDF5 Reference Manual'.\n", PROGRAMNAME);
|
||||||
|
h5diff_exit(EXIT_FAILURE);
|
||||||
|
}
|
||||||
|
+ return (0); // no return in non void function fix
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
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Index: hl/src/H5LTanalyze.c
|
||||||
|
===================================================================
|
||||||
|
--- hl/src/H5LTanalyze.c.orig 2011-11-07 23:11:38.000000000 +0100
|
||||||
|
+++ hl/src/H5LTanalyze.c 2011-11-27 21:59:27.188216404 +0100
|
||||||
|
@@ -2332,6 +2332,9 @@ int my_yyinput(char *buf, int max_size)
|
||||||
|
int H5LTyyerror(char *msg)
|
||||||
|
{
|
||||||
|
printf("ERROR: %s before \"%s\".\n", msg, yytext);
|
||||||
|
+ return (0); // return from non void fix. Fix is already applied at lexer
|
||||||
|
+ // file but i will not re-generate this file as it looks it is changed
|
||||||
|
+ // by hand ...
|
||||||
|
}
|
||||||
|
|
||||||
|
int yywrap()
|
||||||
250
hdf5.changes
Normal file
250
hdf5.changes
Normal file
@ -0,0 +1,250 @@
|
|||||||
|
-------------------------------------------------------------------
|
||||||
|
Sun Feb 19 04:46:42 UTC 2012 - ocefpaf@gmail.com
|
||||||
|
|
||||||
|
- Removed "Fixup headers and scripts for multiarch".
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Nov 30 09:02:37 UTC 2011 - jengelh@medozas.de
|
||||||
|
|
||||||
|
- Remove redundant/unwanted tags/section (cf. specfile guidelines)
|
||||||
|
- Use %_smp_mflags for parallel building
|
||||||
|
- Accurate rpmgroup selection for shared library packages
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Nov 29 20:05:19 UTC 2011 - ocefpaf@gmail.com
|
||||||
|
|
||||||
|
- un-commented --with-pthread and --with-ssl.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
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||||||
|
Mon Nov 28 14:34:24 UTC 2011 - ocefpaf@gmail.com
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||||||
|
|
||||||
|
- Update to 1.8.8
|
||||||
|
* Add patch to avoid setting LD_LIBRARY_PATH
|
||||||
|
* Add patch hdf5-non_void_return.patch
|
||||||
|
* Fixed non_void_return (thanks to Boris Manojlovic).
|
||||||
|
* Drop tstlite patch
|
||||||
|
* drop ppc64 longdouble patch, not required anymore
|
||||||
|
* Catch up with some Fedora modifications
|
||||||
|
- Add rpm macro %%{_hdf5_version} for convenience
|
||||||
|
* No Fortran modules for opensuse < 11.4 (Do not pass make check)
|
||||||
|
|
||||||
|
New Features
|
||||||
|
============
|
||||||
|
|
||||||
|
Configuration
|
||||||
|
-------------
|
||||||
|
- Added the --enable-fortran2003 flag to enable Fortran2003 support
|
||||||
|
in the HDF5 Fortran library. The flag should be used along with the
|
||||||
|
--enable-fortran flag and takes affect only when the Fortran compiler
|
||||||
|
is Fortran2003 compliant. (EIP - 2011/11/14)
|
||||||
|
- Added checks for clock_gettime and mach/mach_time.h to both configure and
|
||||||
|
CMake. This will support the move from gettimeofday to clock_gettime's
|
||||||
|
monotonic timer in the profiling code in a future release.
|
||||||
|
(DER - 2011/10/12)
|
||||||
|
|
||||||
|
Library
|
||||||
|
-------
|
||||||
|
- The Windows VFD code has been removed with the exception of the functions
|
||||||
|
which set it (H5Pset_fapl_windows, for example). Setting the Windows
|
||||||
|
VFD now really sets the SEC2 VFD. The WINDOWS_MAX_BUF and
|
||||||
|
WINDOWS_USE_STDIO configuration options and #defines have also been
|
||||||
|
removed. NOTE: Since the Windows VFD was a clone of the SEC2 VFD, this
|
||||||
|
change should be transparent to users.
|
||||||
|
(DER - 2011/10/12 - HDFFV-7740, HDFFV-7744)
|
||||||
|
- H5Tcreate now supports the string type (fixed-length and variable-
|
||||||
|
length). (SLU - 2011/05/20)
|
||||||
|
|
||||||
|
Parallel Library
|
||||||
|
----------------
|
||||||
|
- Added new H5Pget_mpio_actual_chunk_opt_mode and
|
||||||
|
H5Pget_mpio_actual_io_mode API routines for querying whether/how
|
||||||
|
a collective I/O operation completed. (QAK - 2011/10/12)
|
||||||
|
|
||||||
|
Tools
|
||||||
|
-----
|
||||||
|
- None
|
||||||
|
|
||||||
|
High-Level APIs
|
||||||
|
---------------
|
||||||
|
- Added the following Fortran wrappers for the Dimension Scale APIs:
|
||||||
|
h5dsset_scale_f
|
||||||
|
h5dsattach_scale_f
|
||||||
|
h5dsdetach_scale_f
|
||||||
|
h5dsis_attached_f
|
||||||
|
h5dsis_scale_f
|
||||||
|
h5dsset_label_f
|
||||||
|
h5dsget_label_f
|
||||||
|
h5dsget_scale_name_f
|
||||||
|
h5dsget_num_scales_f
|
||||||
|
(EIP for SB - 2011/10/13 - HDFFV-3797)
|
||||||
|
|
||||||
|
Fortran API
|
||||||
|
-----------
|
||||||
|
- The HDF5 Fortran library was enhanced to support the Fortran 2003 standard.
|
||||||
|
The following features are available when the HDF5 library is configured
|
||||||
|
using the --enable-fortran and --enable-fortran2003 configure flags AND
|
||||||
|
if the Fortran compiler is Fortran 2003 compliant:
|
||||||
|
|
||||||
|
- Subroutines overloaded with the C_PTR derived type:
|
||||||
|
h5pget_f
|
||||||
|
h5pget_fill_value_f
|
||||||
|
h5pinsert_f
|
||||||
|
h5pregister_f
|
||||||
|
h5pset_f
|
||||||
|
h5pset_fill_value_f
|
||||||
|
h5rcreate_f
|
||||||
|
h5rderefrence_f
|
||||||
|
h5rget_name_f
|
||||||
|
h5rget_obj_type_f
|
||||||
|
- Subroutines overloaded with the C_PTR derived type
|
||||||
|
and simplified signatures:
|
||||||
|
h5aread_f
|
||||||
|
h5awrite_f
|
||||||
|
h5dread_f
|
||||||
|
h5dwrite_f
|
||||||
|
- New subroutines
|
||||||
|
h5dvlen_reclaim_f
|
||||||
|
h5literate_by_name_f
|
||||||
|
h5literate_f
|
||||||
|
h5ovisit_f
|
||||||
|
h5tconvert_f
|
||||||
|
h5pset_nbit_f
|
||||||
|
h5pset_scaleoffset_f
|
||||||
|
- Subroutines with additional optional parameters:
|
||||||
|
h5pcreate_class_f
|
||||||
|
(EIP - 2011/10/14)
|
||||||
|
|
||||||
|
C++ API
|
||||||
|
-------
|
||||||
|
- None
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu Jun 2 20:39:35 UTC 2011 - ocefpaf@yahoo.com.br
|
||||||
|
|
||||||
|
- uncomment make check
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue May 24 14:37:23 UTC 2011 - pgajdos@novell.com
|
||||||
|
|
||||||
|
- updated to 1.8.7
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Fri Apr 29 16:11:29 CEST 2011 - pth@suse.de
|
||||||
|
|
||||||
|
- undrop package.
|
||||||
|
- Do type-punning using unions to be able to compile without
|
||||||
|
-fno-strict-aliasing.
|
||||||
|
- Don't use macros in patch names.
|
||||||
|
- Use _cv_ in variables to be cached by configure.
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Thu May 7 19:40:59 CEST 2009 - pgajdos@suse.cz
|
||||||
|
|
||||||
|
- fixed build with new gcc, see [bnc#501751]
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Mar 2 17:00:47 CET 2009 - crrodriguez@suse.de
|
||||||
|
|
||||||
|
- save 9MB removing static libraries
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Jan 13 11:41:28 CET 2009 - pgajdos@suse.cz
|
||||||
|
|
||||||
|
- updated to 1.8.2:
|
||||||
|
- Upgraded libtool to version 2.2.6a. (MAM - 2008/10/15).
|
||||||
|
- Added two new public routines: H5Pget_elink_fapl() and
|
||||||
|
H5Pset_elink_fapl(). (see bug #1247) (VC - 2008/10/13)
|
||||||
|
- Improved free space tracking in file to be faster. (QAK - 2008/10/06)
|
||||||
|
- Added 'mounted' field to H5G_info_t struct. (QAK - 2008/07/15)
|
||||||
|
- h5repack: added new options -u and -b to add a userblock to an HDF5
|
||||||
|
file during the repack. (PVN - 2008/08/26)
|
||||||
|
- h5repack: added options -t and -a to call H5Pset_alignment while
|
||||||
|
creating a repacked file. (PVN - 2008/08/29)
|
||||||
|
- h5ls: added capability to traverse through external links when the -r
|
||||||
|
(recursive) flag is given. (NAF - 2008/09/16)
|
||||||
|
- h5ls: added -E option to enable traversal of external links.
|
||||||
|
h5ls will not traverse external links without this flag being set.
|
||||||
|
(NAF - 2008/10/06)
|
||||||
|
- h5dump: when -b flag is used without a keyword after it, binary
|
||||||
|
output defaults to NATIVE. MEMORY keyword was deprecated
|
||||||
|
and replaced by NATIVE keyword. (PVN - 2008/10/30)
|
||||||
|
- h5diff: returns 1 when file graphs differ by any object.
|
||||||
|
Error return code was changed to 2 from -1. (PVN - 2008/10/30)
|
||||||
|
- h5import: TEXTFPE (scientific format) was deprecated. Use TEXTFP
|
||||||
|
instead (PVN - 2008/10/30)
|
||||||
|
- Added optional parameter 'mounted' to H5Gget_info_f,
|
||||||
|
H5Gget_info_by_idx_f, H5Gget_info_by_name_f (MSB - 2008/09/24)
|
||||||
|
- Added H5Tget_native_type_f (MSB - 2008/09/30)
|
||||||
|
- These member functions were added as wrapper for H5Rdereference to
|
||||||
|
replace the incorrect IdComponent::dereference().
|
||||||
|
void H5Object::dereference(H5Object& obj, void* ref,
|
||||||
|
H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
void H5Object::dereference(H5File& h5file, void* ref,
|
||||||
|
H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
void H5Object::dereference(Attribute& obj, void* ref,
|
||||||
|
H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
In addition, these constructors were added to create the associated
|
||||||
|
objects by way of dereference:
|
||||||
|
DataSet(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
DataSet(H5File& file, void* ref, H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
DataSet(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
Group(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
Group(H5File& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
Group(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
DataType(H5Object& obj, void* ref, H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
DataType(H5File& file, void* ref, H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
DataType(Attribute& attr, void* ref, H5R_type_t ref_type=H5R_OBJECT)
|
||||||
|
(BMR - 2008/10/29)
|
||||||
|
- removed destdir.patch
|
||||||
|
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Jan 12 11:13:33 CET 2009 - pgajdos@suse.cz
|
||||||
|
|
||||||
|
- fortran modules builds from now [bnc#457593]
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Nov 11 11:49:54 CET 2008 - pgajdos@suse.cz
|
||||||
|
|
||||||
|
- fixing build of fortran interface moved to the future
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed Jul 2 10:45:51 CEST 2008 - pgajdos@suse.cz
|
||||||
|
|
||||||
|
- updated to 1.8.1 [bnc#401626]
|
||||||
|
* Enhanced group object management
|
||||||
|
* Enhanced attribute management and more efficient meta data handling
|
||||||
|
* Expanded datatype features
|
||||||
|
* Creation order tracking and indexing
|
||||||
|
* Improved meta data caching and cache control
|
||||||
|
* UTF-8 encoding
|
||||||
|
* New I/O filters: n-bit and scale+offset compression
|
||||||
|
* New link (H5L) and object (H5O) interfaces and features
|
||||||
|
* External and user-defined links
|
||||||
|
* New high-level APIs:
|
||||||
|
HDF5 Packet Table (H5PT) and HDF5 Dimension Scale (H5DS)
|
||||||
|
* C++ and Fortran interfaces for older high-level APIs:
|
||||||
|
H5Lite (H5LT), H5Image (H5IM), and H5Table (H5TB)
|
||||||
|
* New and improved tools
|
||||||
|
- removed doc package (doc/html no longer provided with package)
|
||||||
|
- octave builds againist 1.6 compatibility stuff
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Wed May 7 13:12:11 CEST 2008 - pgajdos@suse.cz
|
||||||
|
|
||||||
|
- repaired no-return-in-nonvoid-function
|
||||||
|
(noreturn.patch)
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Mon Apr 28 11:43:08 CEST 2008 - pgajdos@suse.cz
|
||||||
|
|
||||||
|
- repaired build for
|
||||||
|
* ia64 (%ifarch in hdf5.spec)
|
||||||
|
* s390, s390x (s390.patch)
|
||||||
|
|
||||||
|
-------------------------------------------------------------------
|
||||||
|
Tue Mar 25 11:11:13 CET 2008 - pgajdos@suse.cz
|
||||||
|
|
||||||
|
- package moved from BS, project science
|
||||||
|
- needed by octave 3.0
|
||||||
|
|
||||||
217
hdf5.spec
Normal file
217
hdf5.spec
Normal file
@ -0,0 +1,217 @@
|
|||||||
|
#
|
||||||
|
# spec file for package hdf5 (Version 1.8.8)
|
||||||
|
#
|
||||||
|
# Copyright (c) 2009-2011 SUSE LINUX Products GmbH, Nuernberg, Germany.
|
||||||
|
#
|
||||||
|
# All modifications and additions to the file contributed by third parties
|
||||||
|
# remain the property of their copyright owners, unless otherwise agreed
|
||||||
|
# upon. The license for this file, and modifications and additions to the
|
||||||
|
# file, is the same license as for the pristine package itself (unless the
|
||||||
|
# license for the pristine package is not an Open Source License, in which
|
||||||
|
# case the license is the MIT License). An "Open Source License" is a
|
||||||
|
# license that conforms to the Open Source Definition (Version 1.9)
|
||||||
|
# published by the Open Source Initiative.
|
||||||
|
|
||||||
|
# Please submit bugfixes or comments via http://bugs.opensuse.org/
|
||||||
|
#
|
||||||
|
|
||||||
|
%define hdf5_libver 0
|
||||||
|
%define libname libhdf5
|
||||||
|
|
||||||
|
Name: hdf5
|
||||||
|
Version: 1.8.8
|
||||||
|
Release: 0
|
||||||
|
Summary: A general purpose library and file format for storing scientific data
|
||||||
|
License: BSD-3-Clause
|
||||||
|
Group: Development/Libraries/Other
|
||||||
|
URL: http://www.hdfgroup.org/HDF5/
|
||||||
|
Source0: http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-%{version}%{?snaprel}.tar.bz2
|
||||||
|
Source1: h5comp
|
||||||
|
Patch0: hdf5-LD_LIBRARY_PATH.patch
|
||||||
|
Patch1: hdf5-non_void_return.patch
|
||||||
|
BuildRoot: %{_tmppath}/%{name}-%{version}-build
|
||||||
|
BuildRequires: krb5-devel, openssl-devel, zlib-devel, gcc-fortran, gcc-c++
|
||||||
|
BuildRequires: fdupes
|
||||||
|
|
||||||
|
%description
|
||||||
|
HDF5 is a general purpose library and file format for storing scientific data.
|
||||||
|
HDF5 can store two primary objects: datasets and groups. A dataset is
|
||||||
|
essentially a multidimensional array of data elements, and a group is a
|
||||||
|
structure for organizing objects in an HDF5 file. Using these two basic
|
||||||
|
objects, one can create and store almost any kind of scientific data
|
||||||
|
structure, such as images, arrays of vectors, and structured and unstructured
|
||||||
|
grids. You can also mix and match them in HDF5 files according to your needs.
|
||||||
|
|
||||||
|
%package -n %{libname}-%{hdf5_libver}
|
||||||
|
Summary: HDF 5 runtime libraries
|
||||||
|
Group: System/Libraries
|
||||||
|
|
||||||
|
%description -n %{libname}-%{hdf5_libver}
|
||||||
|
The HDF project involves the development and support of software and
|
||||||
|
file formats for scientific data management. The HDF software includes
|
||||||
|
I/O libraries and tools for analyzing, visualizing, and converting
|
||||||
|
scientific data.
|
||||||
|
|
||||||
|
This package contains the HDF 5 runtime libraries.
|
||||||
|
|
||||||
|
%package -n %{libname}_hl%{hdf5_libver}
|
||||||
|
Summary: HDF 5 runtimelibraries
|
||||||
|
Group: System/Libraries
|
||||||
|
|
||||||
|
%description -n %{libname}_hl%{hdf5_libver}
|
||||||
|
The HDF project involves the development and support of software and
|
||||||
|
file formats for scientific data management. The HDF software includes
|
||||||
|
I/O libraries and tools for analyzing, visualizing, and converting
|
||||||
|
scientific data.
|
||||||
|
|
||||||
|
This package contains the HDF 5 runtime libraries.
|
||||||
|
|
||||||
|
%package devel
|
||||||
|
Summary: Hierarchical Data File Format Version 5
|
||||||
|
Group: Development/Libraries/Parallel
|
||||||
|
Requires: %{name} = %{version}
|
||||||
|
# Required by Fortran programs?
|
||||||
|
Requires: %{libname}-%{hdf5_libver} = %{version}
|
||||||
|
Requires: %{libname}_hl%{hdf5_libver} = %{version}
|
||||||
|
|
||||||
|
%description devel
|
||||||
|
The HDF project involves the development and support of software and
|
||||||
|
file formats for scientific data management. The HDF software includes
|
||||||
|
I/O libraries and tools for analyzing, visualizing, and converting
|
||||||
|
scientific data.
|
||||||
|
|
||||||
|
This package contains all files needed to create projects that use
|
||||||
|
hdf5.
|
||||||
|
|
||||||
|
%package devel-static
|
||||||
|
Summary: Hierarchical Data File Format Version 5 - static libraries
|
||||||
|
Group: Development/Libraries/C and C++
|
||||||
|
Requires: hdf5-devel
|
||||||
|
|
||||||
|
%description devel-static
|
||||||
|
The HDF project involves the development and support of software and
|
||||||
|
file formats for scientific data management. The HDF software includes
|
||||||
|
I/O libraries and tools for analyzing, visualizing, and converting
|
||||||
|
scientific data.
|
||||||
|
|
||||||
|
This package provides the static libraries.
|
||||||
|
|
||||||
|
%package examples
|
||||||
|
Summary: Examples for HDF5
|
||||||
|
Group: Development/Libraries/Parallel
|
||||||
|
Requires: %{libname}-%{hdf5_libver} = %{version}
|
||||||
|
Requires: %{libname}_hl%{hdf5_libver} = %{version}
|
||||||
|
|
||||||
|
%description examples
|
||||||
|
Examples of HDF5 library use.
|
||||||
|
|
||||||
|
%prep
|
||||||
|
%setup -q
|
||||||
|
%patch0 -p1 -b .LD_LIBRARY_PATH
|
||||||
|
%patch1 -b .non_void_return
|
||||||
|
|
||||||
|
#This should be fixed in 1.8.7
|
||||||
|
find \( -name '*.[ch]*' -o -name '*.f90' -o -name '*.txt' \) -exec chmod -x {} +
|
||||||
|
|
||||||
|
%build
|
||||||
|
export CC=gcc
|
||||||
|
export CXX=g++
|
||||||
|
export F9X=gfortran
|
||||||
|
export CFLAGS="${RPM_OPT_FLAGS/O2/O0}"
|
||||||
|
# export CFLAGS="%%{optflags} -fno-strict-aliasing"
|
||||||
|
|
||||||
|
%configure \
|
||||||
|
--disable-dependency-tracking \
|
||||||
|
%if 0%{?suse_version} > 1140
|
||||||
|
--enable-fortran \
|
||||||
|
%endif
|
||||||
|
--enable-hl \
|
||||||
|
--enable-shared \
|
||||||
|
--enable-cxx \
|
||||||
|
--with-pthread \
|
||||||
|
--with-ssl \
|
||||||
|
# --with-pic
|
||||||
|
|
||||||
|
make %{?_smp_mflags}
|
||||||
|
|
||||||
|
%install
|
||||||
|
%makeinstall docdir=%{buildroot}%{_docdir}
|
||||||
|
rm -rf %{buildroot}/%{_libdir}/*.la %{buildroot}/%{_libdir}/*.settings
|
||||||
|
|
||||||
|
find %{buildroot}%{_datadir}/hdf5_examples -type f \
|
||||||
|
| grep -v ".sh$" | xargs chmod 644
|
||||||
|
|
||||||
|
%fdupes -s %{buildroot}/%{_datadir}
|
||||||
|
|
||||||
|
%if 0%{?suse_version} > 1140
|
||||||
|
binaries="h5c++ h5cc h5fc"
|
||||||
|
%else
|
||||||
|
binaries="h5c++ h5cc"
|
||||||
|
%endif
|
||||||
|
|
||||||
|
# rpm macro for version checking
|
||||||
|
mkdir -p %{buildroot}%{_sysconfdir}/rpm
|
||||||
|
cat > %{buildroot}%{_sysconfdir}/rpm/macros.hdf5 <<EOF
|
||||||
|
#
|
||||||
|
# RPM macros for R packaging
|
||||||
|
#
|
||||||
|
|
||||||
|
#
|
||||||
|
# Make R search index.txt
|
||||||
|
#
|
||||||
|
%_hdf5_version %{version}
|
||||||
|
EOF
|
||||||
|
|
||||||
|
%check
|
||||||
|
make check
|
||||||
|
|
||||||
|
%post -n %{libname}-%{hdf5_libver} -p /sbin/ldconfig
|
||||||
|
|
||||||
|
%postun -n %{libname}-%{hdf5_libver} -p /sbin/ldconfig
|
||||||
|
|
||||||
|
%post -n %{libname}_hl%{hdf5_libver} -p /sbin/ldconfig
|
||||||
|
|
||||||
|
%postun -n %{libname}_hl%{hdf5_libver} -p /sbin/ldconfig
|
||||||
|
|
||||||
|
%files
|
||||||
|
%defattr(-,root,root)
|
||||||
|
%doc COPYING MANIFEST README.txt release_docs/RELEASE.txt
|
||||||
|
%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt release_docs/HISTORY-1_8.txt
|
||||||
|
%doc release_docs/RELEASE.txt
|
||||||
|
%{_bindir}/*
|
||||||
|
|
||||||
|
%files -n %{libname}-%{hdf5_libver}
|
||||||
|
%defattr(0755,root,root)
|
||||||
|
%{_libdir}/libhdf5.so.*
|
||||||
|
%{_libdir}/libhdf5_cpp.so.*
|
||||||
|
%if 0%{?suse_version} > 1140
|
||||||
|
%{_libdir}/libhdf5_fortran.so.*
|
||||||
|
%endif
|
||||||
|
|
||||||
|
|
||||||
|
%files -n libhdf5_hl%{hdf5_libver}
|
||||||
|
%defattr(0755,root,root)
|
||||||
|
%{_libdir}/libhdf5_hl.so.*
|
||||||
|
%{_libdir}/libhdf5_hl_cpp.so.*
|
||||||
|
%if 0%{?suse_version} > 1140
|
||||||
|
%{_libdir}/libhdf5hl_fortran.so.*
|
||||||
|
%endif
|
||||||
|
|
||||||
|
%files devel
|
||||||
|
%defattr(-,root,root)
|
||||||
|
%config(noreplace) %{_sysconfdir}/rpm/macros.hdf5
|
||||||
|
%{_includedir}/*.h
|
||||||
|
%{_libdir}/*.so
|
||||||
|
%if 0%{?suse_version} > 1140
|
||||||
|
%{_includedir}/*.mod
|
||||||
|
%endif
|
||||||
|
|
||||||
|
%files devel-static
|
||||||
|
%defattr(-,root,root)
|
||||||
|
%{_libdir}/*.a
|
||||||
|
|
||||||
|
%files examples
|
||||||
|
%defattr(-,root,root)
|
||||||
|
%{_datadir}/hdf5_examples
|
||||||
|
|
||||||
|
%changelog
|
||||||
Loading…
Reference in New Issue
Block a user