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Accepting request 318150 from science

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- update to 1.8.15

fixed baselibs.conf compared to previous version

OBS-URL: https://build.opensuse.org/request/show/318150
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/hdf5?expand=0&rev=23
This commit is contained in:
Stephan Kulow 2015-07-25 05:43:29 +00:00 committed by Git OBS Bridge
parent a5a06c5b4e
commit f9b95bef44
7 changed files with 128 additions and 99 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

24
baselibs.conf
View File

@ -1,18 +1,18 @@
libhdf5-9
libhdf5-10
hdf5-devel
requires -<targettype>
requires "libhdf5-9-<targettype> = <version>"
requires "libhdf5_hl9-<targettype> = <version>"
libhdf5-9-openmpi
requires "libhdf5-10-<targettype> = <version>"
requires "libhdf5_hl10-<targettype> = <version>"
libhdf5-10-openmpi
hdf5-openmpi-devel
requires -openmpi-<targettype>
requires "libhdf5-9-openmpi-<targettype> = <version>"
requires "libhdf5_hl9-openmpi-<targettype> = <version>"
libhdf5-9-mvapich2
libhdf5_hl9
libhdf5_hl9-mvapich2
libhdf5_hl9-openmpi
requires "libhdf5-10-openmpi-<targettype> = <version>"
requires "libhdf5_hl10-openmpi-<targettype> = <version>"
libhdf5-10-mvapich2
libhdf5_hl10
libhdf5_hl10-mvapich2
libhdf5_hl10-openmpi
hdf5-mvapich2-devel
requires -openmpi-<targettype>
requires "libhdf5-9-mvapich2-<targettype> = <version>"
requires "libhdf5_hl9-mvapich2-<targettype> = <version>"
requires "libhdf5-10-mvapich2-<targettype> = <version>"
requires "libhdf5_hl10-mvapich2-<targettype> = <version>"

3
hdf5-1.8.14.tar.bz2
View File

@ -1,3 +0,0 @@
version https://git-lfs.github.com/spec/v1
oid sha256:53722cb9f5977af2908f92fc1a3f8c597800a5cb448cfe5c75060d6335bb9bab
size 9503743

3
hdf5-1.8.15.tar.bz2 Normal file
View File

@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:0003ac76314b9c3dd819f595eb33890f02f6bf000414013a89f9907ac09e3920
size 10002545

66
hdf5-configure-long-double.patch
View File

@ -1,66 +0,0 @@
Index: hdf5-1.8.14/configure
===================================================================
--- hdf5-1.8.14.orig/configure
+++ hdf5-1.8.14/configure
@@ -30288,7 +30288,7 @@ else
/* Test if the last 2 bytes of mantissa are lost. Mainly for FreeBSD on Intel
* architecture(sleipnir) where it happens. */
/*if(endian==0 && c2[0]==0 && c2[1]==0)*/ /*little endian*/
- if(endian==0 && c2[0]==0) { /*little endian*/
+ if(endian==0 && size == 12 && c2[0]==0) { /*little endian*/
ret = 1;
goto done;
}
@@ -30307,16 +30307,16 @@ else
* instead of 0x0000403effffffffffffffff, 0x0000403efffffffffffffffe, ...,
* 0x0000403efffffffffffff000 ...
*/
- if(endian==0 && c2_cyg[0]==0 && c2_cyg[1]==0 && c2_cyg[2]==0 && c2_cyg[3]==0)
+ if(endian==0 && size == 12 && c2_cyg[0]==0 && c2_cyg[1]==0 && c2_cyg[2]==0 && c2_cyg[3]==0)
ret = 1;
+ if(c2_cyg)
+ free(c2_cyg);
done:
if(c1)
free(c1);
if(c2)
free(c2);
- if(c2_cyg)
- free(c2_cyg);
exit(ret);
}
Index: hdf5-1.8.14/configure.ac
===================================================================
--- hdf5-1.8.14.orig/configure.ac
+++ hdf5-1.8.14/configure.ac
@@ -3625,7 +3625,7 @@ else
/* Test if the last 2 bytes of mantissa are lost. Mainly for FreeBSD on Intel
* architecture(sleipnir) where it happens. */
/*if(endian==0 && c2[0]==0 && c2[1]==0)*/ /*little endian*/
- if(endian==0 && c2[0]==0) { /*little endian*/
+ if(endian==0 && size == 12 && c2[0]==0) { /*little endian*/
ret = 1;
goto done;
}
@@ -3644,16 +3644,16 @@ else
* instead of 0x0000403effffffffffffffff, 0x0000403efffffffffffffffe, ...,
* 0x0000403efffffffffffff000 ...
*/
- if(endian==0 && c2_cyg[0]==0 && c2_cyg[1]==0 && c2_cyg[2]==0 && c2_cyg[3]==0)
+ if(endian==0 && size == 12 && c2_cyg[0]==0 && c2_cyg[1]==0 && c2_cyg[2]==0 && c2_cyg[3]==0)
ret = 1;
+ if(c2_cyg)
+ free(c2_cyg);
done:
if(c1)
free(c1);
if(c2)
free(c2);
- if(c2_cyg)
- free(c2_cyg);
exit(ret);
}
], [hdf5_cv_ullong_to_ldouble_precision=yes], [hdf5_cv_ullong_to_ldouble_precision=no],)])

13
hdf5-non_void_return.patch
View File

@ -49,19 +49,6 @@ Index: tools/h5copy/h5copy.c
leave(int ret)
{
if (fname_src)
Index: tools/h5repack/h5repack_main.c
===================================================================
--- tools/h5repack/h5repack_main.c.orig
+++ tools/h5repack/h5repack_main.c
@@ -21,7 +21,7 @@
#define PROGRAMNAME "h5repack"
static int parse_command_line(int argc, const char **argv, pack_opt_t* options);
-static void leave(int ret);
+static void leave(int ret) __attribute__((__noreturn__));
/* module-scoped variables */
Index: tools/misc/h5mkgrp.c
===================================================================
--- tools/misc/h5mkgrp.c.orig

94
hdf5.changes
View File

@ -1,3 +1,97 @@
-------------------------------------------------------------------
Thu Jul 23 11:30:56 UTC 2015 - toddrme2178@gmail.com
- Fix baselibs.conf
-------------------------------------------------------------------
Wed Jul 22 11:23:14 UTC 2015 - toddrme2178@gmail.com
- update to 1.8.15
* New Features
+ Library
- Added Memory Allocation Functions that Use the Library's Allocator
- H5Pset_istore_k and H5Pset_sym_k added validation of "ik" to not
exceed the max v1 btree entries (2 bytes) to these two routines.
- Added Functions to Control the Value of H5PL_no_plugin_g without
Using an Environment Variable
+ Parallel Library
- Attached an attribute destroy callback to MPI_COMM_SELF that
shuts down the HDF5 library when MPI_COMM_SELF is destroyed,
in other words, on MPI_Finalize. This should fix several issues
that users see when they forget to close HDF5 objects before
+ Fortran API
- Added Global Variables. These new global variables are equivalent to
the C definitions without the '_F':
o H5G_UDLINK_F
o H5G_SAME_LOC_F
o H5O_TYPE_UNKNOWN_F
o H5O_TYPE_GROUP_F
o H5O_TYPE_DATASET_F
o H5O_NAMED_DATATYPE_F
o H5O_TYPE_NTYPES_F
+ C++ API
- New Wrappers for C Functions H5P[s/g]et_libver_bounds
- New Wrappers to Get the Object Header's Version
- New DataType Constructor
+ Support for New Platforms, Languages, and Compilers
- Support for Linux 3.10.0-123.20.1.el7 added (LK - 2015/04/01)
* Bug Fixes since HDF5-1.8.14
+ Library
- Addition of Error Tracing Functionality to Several C API Calls
- H5Rdereference Now Checks for HADDR_UNDEF or Uninitialized References
- Fixed Bugs in H5Sextent_copy
+ Parallel Library
- Fixed a Potential Memory Error
- Parallel Test Problem Fixed
- MPE Support
+ Tools
- h5repack crashed on enumerated 8-bit type.
- h52gif crashed non-8bit images.
- perform/benchpar.c retired.
- Source perform/ directory moved to tools/perform.
+ Fortran API
- Fortran Fails with --enable-fortran2003 and Intel 15.x Compilers
- h5tenum_insert_f Does Not Work with Default 8 Byte Integers
(xlf compiler)
- Some Fortran APIs Never Returned the Error State
- Fixed h5pget_class_f
+ C++ API
- Combined Two H5File::getObjCount Overloaded Methods
The following two methods
o ssize_t getObjCount(unsigned types) const;
o ssize_t getObjCount() const;
were combined into one:
o ssize_t getObjCount(unsigned types = H5F_OBJ_ALL) const;
- Many Warnings Were Removed
- Functionality Deprecation
The following two constructors of classes AbstractDs, IdComponent,
H5Location, and H5Object are no longer appropriate after the data member
"id" had been moved from IdComponent to the sub-classes in previous
releases.
o <Classname>(const hid_t h5_id);
o <Classname>(const <Classname>& original);
The copy constructors were no-op and removed in 1.8.15. The other
constructors will be removed from 1.10 release, and then from 1.8.17
if their removal does not cause any problems.
+ High-Level APIs:
- Suppress Warnings from Flex/Bison-generated Code
- Changed hdf5_hl.h to Include the HDF5 Main Library "hdf5.h"
- H5PTcreate_fl Does Not Convert to Memory Datatype
- Fix for H5LT Attribute Functions
+ Fortran High-Level APIs:
- Internal Library Fix for Missing Argument Declaration
- Build in thread-safe mode to allow parallel reads
* These are only unsupported to avoid confusing casual users.
The fotran and C++ libraries don't support thread-safe mode,
while the C library does. So you have to explicitly allow
building the thread-safe C library and the non-thread-safe C++
and fortran libraries in order to make sure only people who
have done their research do so. Since users are going to be
accessing this through other programs, this doesn't matter.
- Build fortran 2003 libraries
- Rebase hdf5-non_void_return.patch
- Remove irrelevant hdf5-configure-long-double.patch
-------------------------------------------------------------------
Mon May 11 13:37:50 UTC 2015 - dmueller@suse.com

24
hdf5.spec
View File

@ -16,7 +16,7 @@
#
%define hdf5_libver 9
%define hdf5_libver 10
%define libname libhdf5
%if 0%{?sles_version}
@ -29,7 +29,7 @@
%define _mpi %{?_openmpi:openmpi} %{?_mvapich2:mvapich2}
Name: hdf5
Version: 1.8.14
Version: 1.8.15
Release: 0
Summary: A general purpose library and file format for storing scientific data
License: BSD-3-Clause
@ -44,8 +44,7 @@ Patch2: hdf5-1.8.11-abort_unknown_host_config.patch
%ifarch %arm
Patch4: hdf5-1.8.10-tests-arm.patch
%endif
Patch5: hdf5-configure-long-double.patch
Patch6: hdf5-ldouble-ppc64le.patch
Patch5: hdf5-ldouble-ppc64le.patch
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: gcc-c++
%if 0%{?suse_version} > 1140
@ -285,7 +284,6 @@ test "%{hdf5_libver}" = "${LT_VERS_INTERFACE}" || exit 1
%patch4 -p0 -b .tests-arm
%endif
%patch5 -p1
%patch6 -p1
echo "prepare parallel builds: %_mpi"
for build_dir in build %_mpi; do
@ -306,16 +304,29 @@ fi
test -e config/linux-gnueabi || cp config/linux-gnu config/linux-gnueabi
%endif
# NOTE: --enable-unsupported is required when --enable-fortran
# and/or --enable-cxx is enabled along with --enable-threadsafe.
# Building with thise combination results in thread-safe C
# libraries and non-thread-safe fotran and/or C++ libraries. So
# you have to explicitly allow building the thread-safe C
# library and the non-thread-safe C++ and fortran libraries in
# order to make sure people don't assume that their fotran or
# C++ code is thread-safe. Since our users are going to be
# accessing this through other programs, this doesn't matter.
pushd build
%configure \
--docdir=%{_docdir}/%{name} \
--disable-dependency-tracking \
%if 0%{?suse_version} > 1140
--enable-fortran \
--enable-fortran2003 \
%endif
--enable-unsupported \
--enable-hl \
--enable-shared \
--enable-cxx \
--enable-threadsafe \
--with-pthread
make V=1 %{?_smp_mflags}
@ -339,9 +350,12 @@ export LD_LIBRARY_PATH="%{_libdir}/mpi/gcc/$mpi/%_lib"
--disable-dependency-tracking \
%if 0%{?suse_version} > 1140
--enable-fortran \
--enable-fortran2003 \
%endif
--enable-unsupported \
--enable-hl \
--enable-shared \
--enable-threadsafe \
--enable-parallel \
--with-pthread