cceb4efe37
remove noisy and unneeded entries in changes file as requested (forwarded request 134414 from scorot) OBS-URL: https://build.opensuse.org/request/show/134430 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/hdf5?expand=0&rev=6
565 lines
17 KiB
RPMSpec
565 lines
17 KiB
RPMSpec
#
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# spec file for package hdf5
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#
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# Copyright (c) 2012 SUSE LINUX Products GmbH, Nuernberg, Germany.
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via http://bugs.opensuse.org/
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#
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%define hdf5_libver 0
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%define libname libhdf5
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%if 0%{?sles_version}
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%define _mpi openmpi mvapich2
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%else
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%define _mpi openmpi
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%endif
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Name: hdf5
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Version: 1.8.9
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Release: 0
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Summary: A general purpose library and file format for storing scientific data
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License: BSD-3-Clause
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Group: Development/Libraries/Other
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Url: http://www.hdfgroup.org/HDF5/
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Source0: http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-%{version}%{?snaprel}.tar.bz2
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Patch0: hdf5-LD_LIBRARY_PATH.patch
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Patch1: hdf5-non_void_return.patch
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# Fix typo bug in parallel h5diff (fixed in 1.9.x)
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Patch3: hdf5-ph5diff.patch
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%ifarch %arm
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Patch4: hdf5-1.8.9-tests-arm.patch
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%endif
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BuildRoot: %{_tmppath}/%{name}-%{version}-build
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BuildRequires: gcc-c++
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%if 0%{?suse_version} > 1140
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BuildRequires: gcc-fortran
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%endif
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BuildRequires: krb5-devel
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BuildRequires: openssl-devel
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BuildRequires: zlib-devel
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%if 0%{?suse_version} >= 1110
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BuildRequires: fdupes
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%endif
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BuildRequires: openmpi-devel
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%if 0%{?sles_version}
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BuildRequires: mvapich2-devel
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%endif
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%description
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HDF5 is a general purpose library and file format for storing scientific data.
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HDF5 can store two primary objects: datasets and groups. A dataset is
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essentially a multidimensional array of data elements, and a group is a
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structure for organizing objects in an HDF5 file. Using these two basic
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objects, one can create and store almost any kind of scientific data
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structure, such as images, arrays of vectors, and structured and unstructured
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grids. You can also mix and match them in HDF5 files according to your needs.
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%package -n %{libname}-%{hdf5_libver}
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Summary: HDF 5 runtime libraries
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Group: System/Libraries
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%description -n %{libname}-%{hdf5_libver}
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package contains the HDF 5 runtime libraries.
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%package -n %{libname}_hl%{hdf5_libver}
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Summary: HDF 5 runtimelibraries
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Group: System/Libraries
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%description -n %{libname}_hl%{hdf5_libver}
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package contains the HDF 5 runtime libraries.
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%package devel
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Summary: Hierarchical Data File Format Version 5
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Group: Development/Libraries/Parallel
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Requires: %{name} = %{version}
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# Required by Fortran programs?
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Requires: %{libname}-%{hdf5_libver} = %{version}
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Requires: %{libname}_hl%{hdf5_libver} = %{version}
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%description devel
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package contains all files needed to create projects that use
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hdf5.
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%package devel-static
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Summary: Hierarchical Data File Format Version 5 - static libraries
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Group: Development/Libraries/C and C++
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Requires: hdf5-devel
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%description devel-static
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package provides the static libraries.
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%package examples
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Summary: Examples for HDF5
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Group: Development/Libraries/Parallel
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Requires: %{libname}-%{hdf5_libver} = %{version}
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Requires: %{libname}_hl%{hdf5_libver} = %{version}
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%description examples
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Examples of HDF5 library use.
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%package -n %{name}-openmpi
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Summary: A general purpose library and file format for storing scientific data
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Group: Development/Libraries/Other
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%description -n %{name}-openmpi
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HDF5 is a general purpose library and file format for storing scientific data.
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HDF5 can store two primary objects: datasets and groups. A dataset is
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essentially a multidimensional array of data elements, and a group is a
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structure for organizing objects in an HDF5 file. Using these two basic
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objects, one can create and store almost any kind of scientific data
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structure, such as images, arrays of vectors, and structured and unstructured
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grids. You can also mix and match them in HDF5 files according to your needs.
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%package -n %{libname}-%{hdf5_libver}-openmpi
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Summary: HDF 5 runtime libraries
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Group: System/Libraries
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%description -n %{libname}-%{hdf5_libver}-openmpi
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package contains the HDF 5 runtime libraries.
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%package -n %{libname}_hl%{hdf5_libver}-openmpi
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Summary: HDF 5 runtimelibraries
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Group: System/Libraries
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%description -n %{libname}_hl%{hdf5_libver}-openmpi
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package contains the HDF 5 runtime libraries.
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%package openmpi-devel
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Summary: Hierarchical Data File Format Version 5
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Group: Development/Libraries/Parallel
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Requires: %{name}-openmpi = %{version}
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# Required by Fortran programs?
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Requires: %{libname}-%{hdf5_libver}-openmpi = %{version}
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Requires: %{libname}_hl%{hdf5_libver}-openmpi = %{version}
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%description openmpi-devel
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package contains all files needed to create projects that use
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hdf5.
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%package openmpi-devel-static
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Summary: Hierarchical Data File Format Version 5 - static libraries
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Group: Development/Libraries/C and C++
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Requires: hdf5-openmpi-devel
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%description openmpi-devel-static
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package provides the static libraries.
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%if 0%{?sles_version}
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%package -n %{name}-mvapich2
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Summary: A general purpose library and file format for storing scientific data
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Group: Development/Libraries/Other
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%description -n %{name}-mvapich2
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HDF5 is a general purpose library and file format for storing scientific data.
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HDF5 can store two primary objects: datasets and groups. A dataset is
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essentially a multidimensional array of data elements, and a group is a
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structure for organizing objects in an HDF5 file. Using these two basic
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objects, one can create and store almost any kind of scientific data
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structure, such as images, arrays of vectors, and structured and unstructured
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grids. You can also mix and match them in HDF5 files according to your needs.
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%package -n %{libname}-%{hdf5_libver}-mvapich2
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Summary: HDF 5 runtime libraries
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Group: System/Libraries
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%description -n %{libname}-%{hdf5_libver}-mvapich2
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package contains the HDF 5 runtime libraries.
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%package -n %{libname}_hl%{hdf5_libver}-mvapich2
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Summary: HDF 5 runtimelibraries
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Group: System/Libraries
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%description -n %{libname}_hl%{hdf5_libver}-mvapich2
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package contains the HDF 5 runtime libraries.
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%package mvapich2-devel
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Summary: Hierarchical Data File Format Version 5
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Group: Development/Libraries/Parallel
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Requires: %{name}-mvapich2 = %{version}
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# Required by Fortran programs?
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Requires: %{libname}-%{hdf5_libver}-mvapich2 = %{version}
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Requires: %{libname}_hl%{hdf5_libver}-mvapich2 = %{version}
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%description mvapich2-devel
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package contains all files needed to create projects that use
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hdf5.
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%package mvapich2-devel-static
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Summary: Hierarchical Data File Format Version 5 - static libraries
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Group: Development/Libraries/C and C++
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Requires: hdf5-mvapich2-devel
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%description mvapich2-devel-static
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The HDF project involves the development and support of software and
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file formats for scientific data management. The HDF software includes
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I/O libraries and tools for analyzing, visualizing, and converting
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scientific data.
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This package provides the static libraries.
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%endif
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%prep
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%setup -q
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%patch0 -p1 -b .LD_LIBRARY_PATH
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%patch1 -p0 -b .non_void_return
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%patch3 -p1 -b .ph5diff
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%ifarch %arm
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%patch4 -p0 -b .tests-arm
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%endif
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set -- *
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for mpi in %_mpi
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do
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mkdir $mpi
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cp -ap "$@" $mpi
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done
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%build
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export CC=gcc
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export CXX=g++
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export F9X=gfortran
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export CFLAGS="${RPM_OPT_FLAGS/O2/O0}"
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# export CFLAGS="%%{optflags} -fno-strict-aliasing"
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%configure \
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--disable-dependency-tracking \
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%if 0%{?suse_version} > 1140
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--enable-fortran \
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%endif
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--enable-hl \
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--enable-shared \
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--enable-cxx \
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--with-pthread
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make %{?_smp_mflags}
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for mpi in %_mpi;
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do
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cd $mpi
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export CC="%{_libdir}/mpi/gcc/$mpi/bin/mpicc"
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export FC="%{_libdir}/mpi/gcc/$mpi/bin/mpif90"
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export F77="%{_libdir}/mpi/gcc/$mpi/bin/mpif77"
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export LD_LIBRARY_PATH=%{_libdir}/mpi/gcc/$mpi/%_lib
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%configure \
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--prefix=%{_libdir}/mpi/gcc/$mpi \
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--bindir=%{_libdir}/mpi/gcc/$mpi/bin \
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--libdir=%{_libdir}/mpi/gcc/$mpi/%_lib \
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--datadir=%{_libdir}/mpi/gcc/$mpi/share \
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--includedir=%{_libdir}/mpi/gcc/$mpi/include \
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--disable-dependency-tracking \
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%if 0%{?suse_version} > 1140
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--enable-fortran \
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%endif
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--enable-hl \
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--enable-shared \
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--enable-parallel \
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--with-pthread
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make %{?_smp_mflags}
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cd ..
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done
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%install
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%makeinstall docdir=%{buildroot}%{_docdir}
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rm -rf %{buildroot}/%{_libdir}/*.la
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find %{buildroot}%{_datadir}/hdf5_examples -type f \
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| grep -v ".sh$" | xargs chmod 644
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%if 0%{?suse_version} >= 1110
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%fdupes -s %{buildroot}/%{_datadir}
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%endif
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# rpm macro for version checking
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mkdir -p %{buildroot}%{_sysconfdir}/rpm
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cat > %{buildroot}%{_sysconfdir}/rpm/macros.hdf5 <<EOF
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#
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# RPM macros for R packaging
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#
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#
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# Make R search index.txt
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#
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%_hdf5_version %{version}
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EOF
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# install parallel version
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for mpi in %_mpi;
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do
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cd $mpi
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%makeinstall docdir=%{buildroot}%{_docdir}
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rm -rf %{buildroot}/%{_libdir}/mpi/gcc/$mpi/%_lib/*.la
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cd ..
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done
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%check
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make check
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%post -n %{libname}-%{hdf5_libver} -p /sbin/ldconfig
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%postun -n %{libname}-%{hdf5_libver} -p /sbin/ldconfig
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%post -n %{libname}_hl%{hdf5_libver} -p /sbin/ldconfig
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%postun -n %{libname}_hl%{hdf5_libver} -p /sbin/ldconfig
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%post -n %{libname}-%{hdf5_libver}-openmpi -p /sbin/ldconfig
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%postun -n %{libname}-%{hdf5_libver}-openmpi -p /sbin/ldconfig
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%post -n %{libname}_hl%{hdf5_libver}-openmpi -p /sbin/ldconfig
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%postun -n %{libname}_hl%{hdf5_libver}-openmpi -p /sbin/ldconfig
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%if 0%{?sles_version}
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%post -n %{libname}-%{hdf5_libver}-mvapich2 -p /sbin/ldconfig
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%postun -n %{libname}-%{hdf5_libver}-mvapich2 -p /sbin/ldconfig
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%post -n %{libname}_hl%{hdf5_libver}-mvapich2 -p /sbin/ldconfig
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%postun -n %{libname}_hl%{hdf5_libver}-mvapich2 -p /sbin/ldconfig
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%endif
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%files
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%defattr(-,root,root)
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%doc COPYING MANIFEST README.txt release_docs/RELEASE.txt
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%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt release_docs/HISTORY-1_8.txt
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%doc release_docs/RELEASE.txt
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%{_bindir}/gif2h5
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%{_bindir}/h52gif
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%{_bindir}/h5copy
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%{_bindir}/h5debug
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%{_bindir}/h5diff
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%{_bindir}/h5dump
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%{_bindir}/h5import
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%{_bindir}/h5jam
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%{_bindir}/h5ls
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%{_bindir}/h5mkgrp
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%{_bindir}/h5perf_serial
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%{_bindir}/h5redeploy
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%{_bindir}/h5repack
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%{_bindir}/h5repart
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%{_bindir}/h5stat
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%{_bindir}/h5unjam
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%files -n %{libname}-%{hdf5_libver}
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%defattr(0755,root,root)
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%{_libdir}/libhdf5.so.*
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%{_libdir}/libhdf5_cpp.so.*
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%if 0%{?suse_version} > 1140
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%{_libdir}/libhdf5_fortran.so.*
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%endif
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%files -n libhdf5_hl%{hdf5_libver}
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%defattr(0755,root,root)
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%{_libdir}/libhdf5_hl.so.*
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%{_libdir}/libhdf5_hl_cpp.so.*
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%if 0%{?suse_version} > 1140
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%{_libdir}/libhdf5hl_fortran.so.*
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%endif
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%files devel
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%defattr(-,root,root)
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%config(noreplace) %{_sysconfdir}/rpm/macros.hdf5
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%{_bindir}/h5c++
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%{_bindir}/h5cc
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%if 0%{?suse_version} > 1140
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%{_bindir}/h5fc
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%endif
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%{_includedir}/*.h
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%{_libdir}/*.so
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%{_libdir}/*.settings
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%if 0%{?suse_version} > 1140
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%{_includedir}/*.mod
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%endif
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%files devel-static
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%defattr(-,root,root)
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%{_libdir}/*.a
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%files examples
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%defattr(-,root,root)
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%{_datadir}/hdf5_examples
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%files -n %{name}-openmpi
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%defattr(-,root,root)
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%doc COPYING MANIFEST README.txt release_docs/RELEASE.txt
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%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt release_docs/HISTORY-1_8.txt
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%doc release_docs/RELEASE.txt
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%{_libdir}/mpi/gcc/openmpi/bin/gif2h5
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%{_libdir}/mpi/gcc/openmpi/bin/h52gif
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%{_libdir}/mpi/gcc/openmpi/bin/h5copy
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%{_libdir}/mpi/gcc/openmpi/bin/h5debug
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%{_libdir}/mpi/gcc/openmpi/bin/h5diff
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%{_libdir}/mpi/gcc/openmpi/bin/h5dump
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%{_libdir}/mpi/gcc/openmpi/bin/h5import
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%{_libdir}/mpi/gcc/openmpi/bin/h5jam
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%{_libdir}/mpi/gcc/openmpi/bin/h5ls
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%{_libdir}/mpi/gcc/openmpi/bin/h5mkgrp
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%{_libdir}/mpi/gcc/openmpi/bin/h5perf
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%{_libdir}/mpi/gcc/openmpi/bin/h5perf_serial
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%{_libdir}/mpi/gcc/openmpi/bin/h5redeploy
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%{_libdir}/mpi/gcc/openmpi/bin/h5repack
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%{_libdir}/mpi/gcc/openmpi/bin/h5repart
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%{_libdir}/mpi/gcc/openmpi/bin/h5stat
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%{_libdir}/mpi/gcc/openmpi/bin/h5unjam
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%{_libdir}/mpi/gcc/openmpi/bin/ph5diff
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|
%files -n %{libname}-%{hdf5_libver}-openmpi
|
|
%defattr(0755,root,root)
|
|
%{_libdir}/mpi/gcc/openmpi/%_lib/libhdf5.so.*
|
|
%if 0%{?suse_version} > 1140
|
|
%{_libdir}/mpi/gcc/openmpi/%_lib/libhdf5_fortran.so.*
|
|
%endif
|
|
|
|
%files -n libhdf5_hl%{hdf5_libver}-openmpi
|
|
%defattr(0755,root,root)
|
|
%{_libdir}/mpi/gcc/openmpi/%_lib/libhdf5_hl.so.*
|
|
%if 0%{?suse_version} > 1140
|
|
%{_libdir}/mpi/gcc/openmpi/%_lib/libhdf5hl_fortran.so.*
|
|
%endif
|
|
|
|
%files openmpi-devel
|
|
%defattr(-,root,root)
|
|
%{_libdir}/mpi/gcc/openmpi/bin/h5pcc
|
|
%if 0%{?suse_version} > 1140
|
|
%{_libdir}/mpi/gcc/openmpi/bin/h5pfc
|
|
%endif
|
|
%{_libdir}/mpi/gcc/openmpi/include/*.h
|
|
%{_libdir}/mpi/gcc/openmpi/%_lib/*.so
|
|
%{_libdir}/mpi/gcc/openmpi/%_lib/*.settings
|
|
%if 0%{?suse_version} > 1140
|
|
%{_libdir}/mpi/gcc/openmpi/include/*.mod
|
|
%endif
|
|
|
|
%files openmpi-devel-static
|
|
%defattr(-,root,root)
|
|
%{_libdir}/mpi/gcc/openmpi/%_lib/*.a
|
|
|
|
%if 0%{?sles_version}
|
|
%files -n %{name}-mvapich2
|
|
%defattr(-,root,root)
|
|
%doc COPYING MANIFEST README.txt release_docs/RELEASE.txt
|
|
%doc release_docs/HISTORY-1_0-1_8_0_rc3.txt release_docs/HISTORY-1_8.txt
|
|
%doc release_docs/RELEASE.txt
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/gif2h5
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h52gif
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5copy
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5debug
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5diff
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5dump
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5import
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5jam
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5ls
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5mkgrp
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5perf
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5perf_serial
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5redeploy
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5repack
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5repart
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5stat
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5unjam
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/ph5diff
|
|
|
|
%files -n %{libname}-%{hdf5_libver}-mvapich2
|
|
%defattr(0755,root,root)
|
|
%{_libdir}/mpi/gcc/mvapich2/%_lib/libhdf5.so.*
|
|
%if 0%{?suse_version} > 1140
|
|
%{_libdir}/mpi/gcc/mvapich2/%_lib/libhdf5_fortran.so.*
|
|
%endif
|
|
|
|
%files -n libhdf5_hl%{hdf5_libver}-mvapich2
|
|
%defattr(0755,root,root)
|
|
%{_libdir}/mpi/gcc/mvapich2/%_lib/libhdf5_hl.so.*
|
|
%if 0%{?suse_version} > 1140
|
|
%{_libdir}/mpi/gcc/mvapich2/%_lib/libhdf5hl_fortran.so.*
|
|
%endif
|
|
|
|
%files mvapich2-devel
|
|
%defattr(-,root,root)
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5pcc
|
|
%if 0%{?suse_version} > 1140
|
|
%{_libdir}/mpi/gcc/mvapich2/bin/h5pfc
|
|
%endif
|
|
%{_libdir}/mpi/gcc/mvapich2/include/*.h
|
|
%{_libdir}/mpi/gcc/mvapich2/%_lib/*.so
|
|
%{_libdir}/mpi/gcc/mvapich2/%_lib/*.settings
|
|
%if 0%{?suse_version} > 1140
|
|
%{_libdir}/mpi/gcc/mvapich2/include/*.mod
|
|
%endif
|
|
|
|
%files mvapich2-devel-static
|
|
%defattr(-,root,root)
|
|
%{_libdir}/mpi/gcc/mvapich2/%_lib/*.a
|
|
%endif
|
|
|
|
%changelog
|