Commit Graph

3 Commits

Author SHA256 Message Date
Dirk Stoecker
292c9efb9e Accepting request 1084765 from home:amanzini:branches:science
- Update to 1.5.0:
  * Significant speed ups to the fqzcomp codec via code restructuring
    and use of memory prefetch instructions. Encode is 30-40% faster
    and decode 5-8% faster.
  * Remove unused ax_with_libdeflate.m4 file from build system
- removed patch fix_ix86_build.patch already merged in upstream
- Update to 1.4.0:
  * This is almost entirely minor bug fixing with a few small updates.
  * Optimise compression / speed of the name tokeniser
  * Improvements for Intel -m32 builds, including better AVX2 validation
  * Detect Neon capability at runtime via operating system APIs.
  * Update hts_pack to operate in line with CRAMcodecs spec, where the number of symbols > 16.
  * Fixed too-stringent buffer overflow checking in O1 rans decoder.

OBS-URL: https://build.opensuse.org/request/show/1084765
OBS-URL: https://build.opensuse.org/package/show/science/htscodecs?expand=0&rev=5
2023-05-12 09:50:10 +00:00
c861ce8245 Accepting request 1002208 from home:StefanBruens:branches:science
- Update to 1.3.0:
  * The primary change in this release is a new SIMD enabled
    rANS codec.
    There is a 32-way unrolled rANS implementation. This is accessed
    using the existing rans 4x16 API with the RANS_ORDER_X32 bit set.
  * Improved memory allocation via a new htscodecs_tls_alloc function.
  * Some external functions have been renamed, with the old ones
    still existing in a deprecated fashion.
  * Improved test framework with an "entropy" tool that iterates
    over all entropy encoders.
  * Reworked fuzzing infrastructure.
  * Small speed improvements to various rANS encoders and decoders.
  * Substantial memory reduction to the name tokeniser (tok3).
  * Fixed undefined behaviour in our use of _builtin_clz().
  * Fixed a few redundant #includes.
  * Work around strict aliasing bugs, uncovered with gcc -O2.
  * Fixed an issue with encoding data blocks close to 2GB in size.
  * Fix encode error with large blocks using RANS_ORDER_STRIPE.
- Add fix_ix86_build.patch

OBS-URL: https://build.opensuse.org/request/show/1002208
OBS-URL: https://build.opensuse.org/package/show/science/htscodecs?expand=0&rev=3
2022-09-11 06:19:50 +00:00
ef7a9140e1 Accepting request 971254 from home:susnux:branches:science
Required for libhts

OBS-URL: https://build.opensuse.org/request/show/971254
OBS-URL: https://build.opensuse.org/package/show/science/htscodecs?expand=0&rev=1
2022-05-02 09:30:00 +00:00