Accepting request 1132207 from home:uncomfyhalomacro:branches:science
- Remove debug package. It's not created. Still we won't strip debug symbols from julia as it will cause issues. - Declare that it conflicts with juliaup. - Update tagged release banner message that says it is an unofficial experimental build - Add mbedtls-hardcoded-libs.patch - Update description - Add llvm-link-shared.patch - Add openlibm.patch - Add libblastrampoline-hardcoded-libs.patch - Add use-system-libuv-correctly.patch - Use sed to replace julia-hardcoded-libs.patch - Add patch julia-suitesparse-7.patch - Update julia-env-script-interpreter.patch - Add new patches * 21d4c2f1.patch * 959902f1.patch * e08e1444.patch * f11bfc6c.patch * julia-hardcoded-libs.patch * julia-libgit2-1.7.patch * julia-libunwind-1.9.patch - Update to julia version 1.9.4 ** CHANGELOG TOO HUGE SINCE 1.6.3 ** See https://github.com/JuliaLang/julia/compare/v1.6.3...v1.9.4 - Remove a lot of old patches * julia-fix_doc_build.patch * julia-fix-mbedtls-build-failure-gcc-11.patch * julia-fix-task-build-failure-gcc-11.patch OBS-URL: https://build.opensuse.org/request/show/1132207 OBS-URL: https://build.opensuse.org/package/show/science/julia?expand=0&rev=114
This commit is contained in:
Soc Virnyl Estela
committed by
Git OBS Bridge
Git OBS Bridge
parent
bd3f4624e7
commit
e15cadffe0
288
julia.spec
288
julia.spec
@@ -1,4 +1,4 @@
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#
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# spec file for package julia
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#
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# Copyright (c) 2021 SUSE LLC
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@@ -23,47 +23,64 @@
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%undefine _build_create_debug
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%define __arch_install_post export NO_BRP_STRIP_DEBUG=true
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%global __provides_exclude_from ^%{_libdir}/%{name}/.*\\.so$
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# List all bundled libraries.
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%global _privatelibs lib(LLVM-.*|ccalltest|dSFMT|git2|llvmcalltest|openlibm|suitesparse_wrapper|mbedcrypto|mbedtls|mbedx509|uv)\\.so.*
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%global __provides_exclude ^(%{_privatelibs})$
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%global __requires_exclude ^(%{_privatelibs})$
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%define libjulia_sover_major 1
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%define libjulia_sover_minor 6
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%define libjulia_sover_minor 9
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%if "@BUILD_FLAVOR@%{nil}" == "compat"
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%define compat_mode 1
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%else
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%define compat_mode 0
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%endif
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Version: 1.6.3
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# LTO currently makes building blastrampoline and Julia itself fail
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# It is not enabled upstream anyway
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%global _lto_cflags %nil
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Version: 1.9.4
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Release: 0
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URL: http://julialang.org/
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Source0: https://github.com/JuliaLang/julia/releases/download/v%{version}/julia-%{version}-full.tar.gz
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Source1: julia-rpmlintrc
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Source99: juliabuildopts
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# PATCH-FIX-OPENSUSE julia-env-script-interpreter.patch ronisbr@gmail.com -- Change script interpreted to avoid errors in rpmlint.
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Patch0: julia-env-script-interpreter.patch
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# PATCH-FIX-OPENSUSE julia-fix_doc_build.patch ronisbr@gmail.com -- Makefile is building the docs with `USE_SYSTEM_CSL=1` even if they are already available in the tarball.
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Patch1: julia-fix_doc_build.patch
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# PATCH-FIX-UPSTREAM julia-fix-mbedtls-build-failure-gcc-11.patch ronisbr@gmail.com - Fix MBEDTLS building using GCC 11.
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Patch2: julia-fix-mbedtls-build-failure-gcc-11.patch
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# PATCH-FIX-UPSTREAM julia-fix-task-build-failure-gcc-11.patch pandom79@gmail.com - Fix task.c building using GCC 11.
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Patch3: julia-fix-task-build-failure-gcc-11.patch
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Patch1: julia-env-script-interpreter.patch
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Patch2: https://gitlab.archlinux.org/archlinux/packaging/packages/julia/-/raw/main/e08e1444.patch?ref_type=heads#/e08e1444.patch
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Patch3: https://gitlab.archlinux.org/archlinux/packaging/packages/julia/-/raw/main/959902f1.patch?ref_type=heads#/959902f1.patch
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Patch4: https://gitlab.archlinux.org/archlinux/packaging/packages/julia/-/raw/main/f11bfc6c.patch?ref_type=heads#/f11bfc6c.patch
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Patch5: https://gitlab.archlinux.org/archlinux/packaging/packages/julia/-/raw/main/21d4c2f1.patch?ref_type=heads#/21d4c2f1.patch
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Patch6: https://gitlab.archlinux.org/archlinux/packaging/packages/julia/-/raw/main/julia-libunwind-1.6.patch?ref_type=heads#/julia-libunwind-1.9.patch
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Patch8: https://gitlab.archlinux.org/archlinux/packaging/packages/julia/-/raw/main/julia-libgit2-1.7.patch?ref_type=heads#/julia-libgit2-1.7.patch
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Patch9: https://gitlab.archlinux.org/archlinux/packaging/packages/julia/-/raw/main/julia-suitesparse-7.patch?ref_type=heads#/julia-suitesparse-7.patch
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Patch10: use-system-libuv-correctly.patch
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Patch11: openlibm.patch
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Patch12: llvm-link-shared.patch
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Patch13: https://gitlab.archlinux.org/archlinux/packaging/packages/julia/-/raw/main/julia-hardcoded-libs.patch?ref_type=heads#/julia-hardcoded-libs.patch
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Patch14: mbedtls-hardcoded-libs.patch
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Patch15: libblastrampoline-hardcoded-libs.patch
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BuildRequires: arpack-ng-devel >= 3.3.0
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BuildRequires: llvm15-devel
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BuildRequires: libblastrampoline-devel
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BuildRequires: lld15
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BuildRequires: libwhich
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BuildRequires: libgit2-devel
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BuildRequires: zlib-devel
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BuildRequires: p7zip >= 16
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BuildRequires: dSFMT-devel
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BuildRequires: libuv-devel
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BuildRequires: mbedtls-devel
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BuildRequires: openlibm-devel
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BuildRequires: utf8proc-devel
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BuildRequires: blas-devel
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BuildRequires: cmake
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BuildRequires: double-conversion-devel
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BuildRequires: fdupes
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BuildRequires: fftw3-threads-devel >= 3.3.4
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BuildRequires: gcc-c++
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BuildRequires: gcc
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BuildRequires: gcc-fortran
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BuildRequires: gmp-devel >= 6.1.2
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BuildRequires: hicolor-icon-theme
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BuildRequires: lapack-devel >= 3.5.0
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BuildRequires: libcurl-devel
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BuildRequires: libnghttp2-devel
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BuildRequires: openblas-common-devel
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BuildRequires: libopenblas_openmp-devel >= 0.3.5
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BuildRequires: libssh2-devel >= 1.9.0
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BuildRequires: libunwind-devel >= 1.3.1
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@@ -79,24 +96,12 @@ BuildRequires: python >= 2.5
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BuildRequires: readline-devel
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BuildRequires: suitesparse-devel >= 5.4.0
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BuildRequires: update-desktop-files
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BuildRequires: zlib-devel >= 1.2.11
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Requires: libamd2
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Requires: libarpack2
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Requires: libcamd2
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Requires: libccolamd2
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Requires: libcholmod3
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Requires: libcolamd2
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Requires: libfftw3_threads3
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Requires: libgmp10
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Requires: libmpfr6
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Requires: libopenblas_openmp0 >= 0.3.5
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Requires: libpcre2-8-0
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Requires: libspqr2
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Requires: libsuitesparseconfig5
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Requires: libumfpack5
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Requires: ncurses
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BuildRequires: ca-certificates
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Conflicts: juliaup
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Requires: p7zip >= 16
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Requires: readline
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Requires: ca-certificates
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Requires: julia-devel = %{version}
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Recommends: arpack-ng-devel
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Recommends: git
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Recommends: gmp-devel
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@@ -140,6 +145,9 @@ library. The library, largely written in Julia itself, also integrates mature,
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best-of-breed C and Fortran libraries for linear algebra, random number
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generation, signal processing, and string processing.
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This package is experimental and by no means supported by upstream. If you want
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to use julia, please install juliaup instead
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%package devel
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Summary: Julia development, debugging and testing files
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Group: Development/Languages/Other
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@@ -155,45 +163,50 @@ debugging version of Julia. This package is normally not needed when programming
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in the Julia language, but rather for embedding Julia into external programs or
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debugging Julia itself.
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%package debug
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Summary: Julia debugging
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Group: Development/Languages/Other
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Requires: %{name} = %{version}
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%if 0%{?compat_mode}
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Conflicts: julia-debug
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%endif
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%description debug
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Contains a debugging version of Julia system image and Julia library.
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%if 0%{?compat_mode} == 0
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%package doc
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Summary: Julia documentation and code examples
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Group: Documentation/Other
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BuildArch: noarch
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%description doc
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Contains the Julia manual, the reference documentation of the standard library.
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%endif
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%{expand:%global juliabuildopts %(cat %{SOURCE99})}
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%prep
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%setup -q -n julia-%{version}
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%patch0 -p1
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%patch1 -p1
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%patch2 -p1
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%patch3 -p1
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patch -p1 -i %{PATCH1}
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patch -p1 -i %{PATCH2}
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patch -p1 -i %{PATCH3}
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patch -p1 -i %{PATCH4}
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patch -p1 -i %{PATCH5}
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# libunwind 1.6 compatibility
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patch -p1 -i %{PATCH6}
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# Fix tests with libgit2 1.7
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patch -p1 -i %{PATCH8}
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# Make.inc puts it in the wrong libpath
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# patch -p1 -i %{PATCH10}
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patch -p1 -i %{PATCH11}
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patch -p1 -i %{PATCH12}
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patch -p1 -i %{PATCH13}
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patch -p1 -i %{PATCH14}
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patch -p1 -i %{PATCH15}
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%ifarch aarch64 %{arm}
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# https://github.com/JuliaLang/julia/issues/41613#issuecomment-976535193
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sed -i 's#$(eval $(call symlink_system_library,CSL,libquadmath,0))##' base/Makefile
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%endif
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# remove .gitignore
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find . -name ".git*" -exec rm {} \;
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pushd stdlib/srccache
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tar -xzf SparseArrays-37e6e58706a54c5a1b96a17cda7d3e8be8bcb190.tar.gz
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patch -d JuliaSparse-SparseArrays.jl-37e6e58 -p1 -i %{PATCH9}
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rm SparseArrays-37e6e58706a54c5a1b96a17cda7d3e8be8bcb190.tar.gz
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tar -czf SparseArrays-37e6e58706a54c5a1b96a17cda7d3e8be8bcb190.tar.gz JuliaSparse-SparseArrays.jl-37e6e58
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md5sum SparseArrays-37e6e58706a54c5a1b96a17cda7d3e8be8bcb190.tar.gz | cut -d ' ' -f 1 > ../../deps/checksums/SparseArrays-37e6e58706a54c5a1b96a17cda7d3e8be8bcb190.tar.gz/md5
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sha512sum SparseArrays-37e6e58706a54c5a1b96a17cda7d3e8be8bcb190.tar.gz | cut -d ' ' -f 1 > ../../deps/checksums/SparseArrays-37e6e58706a54c5a1b96a17cda7d3e8be8bcb190.tar.gz/sha512
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popd
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# Work around bug that prompts zlib to be downloaded even when not used
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# https://github.com/JuliaLang/julia/pull/42524/files#r734972945
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sed "s/ \$(build_prefix)\\/manifest\\/zlib//" -i deps/llvm.mk
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%build
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# Workaround for https://github.com/JuliaLang/julia/issues/27118
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%global build_cxxflags %(echo %{build_cxxflags} | sed 's/-Wp,-D_GLIBCXX_ASSERTIONS //')
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# Workaround for https://github.com/JuliaLang/julia/issues/39822
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# and https://bugzilla.redhat.com/show_bug.cgi?id=1928696
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%global build_cflags %(echo %{build_cflags} | sed 's/-Wp,-D_GNU_SOURCE //')
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%if 0%{?compat_mode} == 0
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%ifarch x86_64
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@@ -225,7 +238,7 @@ find . -name ".git*" -exec rm {} \;
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%define julia_march x86-64
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%endif
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%ifarch armv6l armv6hl
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%ifarch armv6l armv6hl aarch64
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export LDFLAGS="$LDFLAGS -latomic"
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%endif
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@@ -233,14 +246,18 @@ export LDFLAGS="$LDFLAGS -latomic"
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# GCC-11.
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# Ref.: https://build.opensuse.org/package/show/security:tls/mbedtls
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export CFLAGS="%{optflags} -Wno-stringop-overflow -Wno-maybe-uninitialized"
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export CXXLAGS="%{optflags} -Wno-stringop-overflow -Wno-maybe-uninitialized"
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export CXXFLAGS="%{optflags} -Wno-stringop-overflow -Wno-maybe-uninitialized"
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%define julia_builddir %{_builddir}/%{name}/
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make %{?_smp_mflags} \
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MARCH=%{julia_march} \
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%ifarch aarch64
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JULIA_CPU_TARGET="generic" \
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JULIA_CPU_TARGET="generic;cortex-a57;thunderx2t99;armv8.2-a,crypto,fullfp16,lse,rdm" \
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%endif
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%ifarch x86_64
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JULIA_CPU_TARGET="generic;sandybridge,-xsaveopt,clone_all;haswell,-rdrnd,base(1)" \
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%endif
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build_prefix=%{_builddir}/%{buildsubdir}/build%{_prefix} \
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build_libdir=%{_builddir}/%{buildsubdir}/build%{_libdir} \
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prefix=%{_prefix} \
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bindir=%{_bindir} \
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libdir=%{_libdir} \
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@@ -248,7 +265,42 @@ make %{?_smp_mflags} \
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datarootdir=%{_datarootdir} \
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includedir=%{_includedir} \
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sysconfdir=%{_sysconfdir} \
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%{juliabuildopts} \
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USE_BINARYBUILDER=0 \
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USE_SYSTEM_CSL=1 \
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USE_SYSTEM_LLVM=1 \
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USE_SYSTEM_LLD=1 \
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USE_SYSTEM_LIBUNWIND=1 \
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USE_SYSTEM_PCRE=1 \
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USE_SYSTEM_BLAS=1 \
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OPENBLAS_LIBNAMESUFFIX= \
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USE_SYSTEM_LAPACK=1 \
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USE_SYSTEM_LIBBLASTRAMPOLINE=1 \
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USE_SYSTEM_GMP=1 \
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USE_SYSTEM_MPFR=1 \
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USE_SYSTEM_LIBSUITESPARSE=1 \
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USE_SYSTEM_SUITESPARSE=1 \
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USE_INTEL_JITEVENTS=0 \
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USE_SYSTEM_LIBWHICH=1 \
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USE_SYSTEM_DSFMT=1 \
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USE_SYSTEM_LIBUV=0 \
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USE_SYSTEM_UTF8PROC=1 \
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USE_SYSTEM_LIBGIT2=1 \
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USE_SYSTEM_LIBSSH2=1 \
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USE_SYSTEM_MBEDTLS=1 \
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USE_SYSTEM_CURL=1 \
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USE_SYSTEM_PATCHELF=1 \
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USE_SYSTEM_ZLIB=1 \
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USE_SYSTEM_P7ZIP=1 \
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USE_SYSTEM_OPENLIBM=1 \
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USE_BLAS64=0 \
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LIBBLAS=-lblas \
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LIBBLASNAME=libblas \
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LIBLAPACK=-llapack \
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LIBLAPACKNAME=liblapack \
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JLDFLAGS="$LDFLAGS" \
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VERBOSE=1 \
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LLVM_CONFIG=llvm-config \
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TAGGED_RELEASE_BANNER="openSUSE %{suse_version} experimental build (unofficial)" \
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release debug
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%check
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@@ -256,11 +308,22 @@ make %{?_smp_mflags} \
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# make %{?_smp_mflags} test
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%install
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# We need these compilation flags to avoid error when building MBEDTLS with
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# GCC-11.
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# Ref.: https://build.opensuse.org/package/show/security:tls/mbedtls
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export CFLAGS="%{optflags} -Wno-stringop-overflow -Wno-maybe-uninitialized"
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export CXXFLAGS="%{optflags} -Wno-stringop-overflow -Wno-maybe-uninitialized"
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make install DESTDIR=%{buildroot} \
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MARCH=%{julia_march} \
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%ifarch aarch64
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JULIA_CPU_TARGET="generic" \
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JULIA_CPU_TARGET="generic;cortex-a57;thunderx2t99;armv8.2-a,crypto,fullfp16,lse,rdm" \
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%endif
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%ifarch x86_64
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JULIA_CPU_TARGET="generic;sandybridge,-xsaveopt,clone_all;haswell,-rdrnd,base(1)" \
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%endif
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build_prefix=%{_builddir}/%{buildsubdir}/build%{_prefix} \
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build_libdir=%{_builddir}/%{buildsubdir}/build%{_libdir} \
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prefix=%{_prefix} \
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bindir=%{_bindir} \
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libdir=%{_libdir} \
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@@ -268,14 +331,48 @@ make install DESTDIR=%{buildroot} \
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datarootdir=%{_datarootdir} \
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includedir=%{_includedir} \
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sysconfdir=%{_sysconfdir} \
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%{juliabuildopts}
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USE_BINARYBUILDER=0 \
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||||
USE_SYSTEM_CSL=1 \
|
||||
USE_SYSTEM_LLVM=1 \
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||||
USE_SYSTEM_LLD=1 \
|
||||
USE_SYSTEM_LIBUNWIND=1 \
|
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USE_SYSTEM_PCRE=1 \
|
||||
USE_SYSTEM_BLAS=1 \
|
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OPENBLAS_LIBNAMESUFFIX= \
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||||
USE_SYSTEM_LAPACK=1 \
|
||||
USE_SYSTEM_LIBBLASTRAMPOLINE=1 \
|
||||
USE_SYSTEM_GMP=1 \
|
||||
USE_SYSTEM_MPFR=1 \
|
||||
USE_SYSTEM_LIBSUITESPARSE=1 \
|
||||
USE_SYSTEM_SUITESPARSE=1 \
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||||
USE_INTEL_JITEVENTS=0 \
|
||||
USE_SYSTEM_LIBWHICH=1 \
|
||||
USE_SYSTEM_DSFMT=1 \
|
||||
USE_SYSTEM_LIBUV=0 \
|
||||
USE_SYSTEM_UTF8PROC=1 \
|
||||
USE_SYSTEM_LIBGIT2=1 \
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||||
USE_SYSTEM_LIBSSH2=1 \
|
||||
USE_SYSTEM_MBEDTLS=1 \
|
||||
USE_SYSTEM_CURL=1 \
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||||
USE_SYSTEM_PATCHELF=1 \
|
||||
USE_SYSTEM_ZLIB=1 \
|
||||
USE_SYSTEM_P7ZIP=1 \
|
||||
USE_SYSTEM_OPENLIBM=1 \
|
||||
USE_BLAS64=0 \
|
||||
LIBBLAS=-lblas \
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||||
LIBBLASNAME=libblas \
|
||||
LIBLAPACK=-llapack \
|
||||
LIBLAPACKNAME=liblapack \
|
||||
JLDFLAGS="$LDFLAGS" \
|
||||
VERBOSE=1 \
|
||||
LLVM_CONFIG=llvm-config \
|
||||
TAGGED_RELEASE_BANNER="openSUSE %{suse_version} experimental build (unofficial)"
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||||
|
||||
# GZip man page.
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||||
gzip %{buildroot}/%{_mandir}/man1/julia.1
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||||
# Copy the man page for every executable.
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||||
cd %{buildroot}/%{_mandir}/man1/
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ln -sf julia.1.gz julia-debug.1.gz
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||||
|
||||
rm -f %{buildroot}%{_libdir}/julia/libuv.a
|
||||
rm -f %{buildroot}%{_datadir}/julia/base/build.h
|
||||
@@ -286,14 +383,21 @@ mkdir -p %{buildroot}%{_docdir}/julia
|
||||
mv -f %{buildroot}%{_datadir}/doc/julia/* %{buildroot}%{_docdir}/julia/
|
||||
rm -r %{buildroot}%{_datadir}/doc/julia
|
||||
|
||||
ln -sfv /var/lib/ca-certificates/ca-bundle.pem %{buildroot}%{_datadir}/julia/cert.pem # Needed by some julia packages
|
||||
|
||||
# Remove execution permission on documentation files.
|
||||
chmod -x+X -R %{buildroot}%{_docdir}/julia/*
|
||||
|
||||
# Remove hidden files from stdlib.
|
||||
pushd %{buildroot}%{_datadir}/julia/stdlib/
|
||||
find . -name ".codecov.yml" -exec rm -rf {} \;
|
||||
find . -name ".gitignore" -exec rm -rf {} \;
|
||||
find . -name ".travis.yml" -exec rm -rf {} \;
|
||||
# Remove hidden files and zero-length files and directories from stdlib.
|
||||
pushd %{buildroot}
|
||||
find . -name ".codecov.yml" -prune -execdir rm -rf {} \;
|
||||
find . -name ".git*" -prune -execdir rm -rf {} \;
|
||||
find . -name ".ci" -prune -execdir rm -rf {} \;
|
||||
find . -name ".devcontainer" -prune -execdir rm -rf {} \;
|
||||
find . -name ".travis.yml" -prune -execdir rm -rf {} \;
|
||||
find . -empty -type d -prune -execdir rm -rf {} \;
|
||||
find . -empty -type f -prune -execdir rm -rf {} \;
|
||||
find . -name "*.orig" -prune -execdir rm -rf {} \;
|
||||
popd
|
||||
|
||||
%if 0%{?compat_mode}
|
||||
@@ -315,8 +419,6 @@ rm %{buildroot}%{_datadir}/appdata/julia.appdata.xml
|
||||
%postun -p /sbin/ldconfig
|
||||
%post devel -p /sbin/ldconfig
|
||||
%postun devel -p /sbin/ldconfig
|
||||
%post debug -p /sbin/ldconfig
|
||||
%postun debug -p /sbin/ldconfig
|
||||
|
||||
%files
|
||||
%doc CONTRIBUTING.md NEWS.md README.md
|
||||
@@ -326,10 +428,16 @@ rm %{buildroot}%{_datadir}/appdata/julia.appdata.xml
|
||||
%{_datadir}/julia/base
|
||||
%{_datadir}/julia/base.cache
|
||||
%{_datadir}/julia/stdlib
|
||||
%{_datadir}/julia/compiled*
|
||||
%{_datadir}/julia/cert.pem
|
||||
%dir %{_libexecdir}/julia
|
||||
%{_libexecdir}/julia/*
|
||||
|
||||
%if !%{?compat_mode}
|
||||
%dir %{_datadir}/appdata/
|
||||
%{_datadir}/appdata/julia.appdata.xml
|
||||
%dir %{_docdir}/julia
|
||||
%{_docdir}/julia/*
|
||||
%endif
|
||||
%{_datadir}/applications/julia.desktop
|
||||
%{_libdir}/julia/
|
||||
@@ -337,11 +445,6 @@ rm %{buildroot}%{_datadir}/appdata/julia.appdata.xml
|
||||
%{_mandir}/man1/julia.1%{?ext_man}
|
||||
%dir %{_sysconfdir}/julia/
|
||||
%config(noreplace) %{_sysconfdir}/julia/startup.jl
|
||||
# Exclude debugging files.
|
||||
%exclude %{_libdir}/julia/libccalltest.so.debug
|
||||
%exclude %{_libdir}/julia/sys-debug.so
|
||||
# Exclude documentation.
|
||||
%exclude %{_docdir}/julia/html
|
||||
|
||||
%files devel
|
||||
%{_datadir}/julia/test/
|
||||
@@ -350,21 +453,4 @@ rm %{buildroot}%{_datadir}/appdata/julia.appdata.xml
|
||||
%{_libdir}/libjulia.so.%{libjulia_sover_major}
|
||||
%{_libdir}/libjulia.so
|
||||
|
||||
%files debug
|
||||
%{_bindir}/julia-debug
|
||||
%{_libdir}/libjulia-debug.so.%{libjulia_sover_major}.%{libjulia_sover_minor}
|
||||
%{_libdir}/libjulia-debug.so.%{libjulia_sover_major}
|
||||
%{_libdir}/libjulia-debug.so
|
||||
%{_libdir}/julia/libccalltest.so.debug
|
||||
%{_libdir}/julia/sys-debug.so
|
||||
%{_mandir}/man1/julia-debug.1%{?ext_man}
|
||||
|
||||
%if 0%{?compat_mode} == 0
|
||||
%files doc
|
||||
%{_docdir}/julia
|
||||
%exclude %{_docdir}/julia/CONTRIBUTING.md
|
||||
%exclude %{_docdir}/julia/NEWS.md
|
||||
%exclude %{_docdir}/julia/README.md
|
||||
%endif
|
||||
|
||||
%changelog
|
||||
|
||||
Reference in New Issue
Block a user