lalapps/lalapps.spec

#
# spec file for package lalapps
#
# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.

# Please submit bugfixes or comments via https://bugs.opensuse.org/
#


%define skip_python2 1
# NEP 29: astropy, numpy, scipy do not have a python36 flavor package in TW
%define skip_python36 1
Name:           lalapps
Version:        9.2.1
Release:        0
Summary:        LSC Algorithm Library Applications
License:        GPL-2.0-or-later
Group:          Productivity/Scientific/Physics
URL:            https://wiki.ligo.org/Computing/DASWG/LALSuite
Source:         https://software.igwn.org/sources/source/lalsuite/%{name}-%{version}.tar.xz
# PATCH-FIX-UPSTREAM lalapps-fix-uninitialised-var.patch badshah400@gmail.com -- Fix usage of uninitialised variable
Patch0:         lalapps-fix-uninitialised-var.patch
# PATCH-FIX-UPSTREAM lalapps-disable-testWeave-for-non-x86_64.patch badshah400@gmail.com -- Disable Weave related tests on all but x86_64 where tolerance errors show up, see https://git.ligo.org/lscsoft/lalsuite/-/issues/105
Patch2:         lalapps-disable-testWeave-for-non-x86_64.patch
BuildRequires:  %{python_module astropy}
BuildRequires:  %{python_module devel}
BuildRequires:  %{python_module glue}
BuildRequires:  %{python_module lal >= 7.3.0}
BuildRequires:  %{python_module lalburst >= 2.0.1}
BuildRequires:  %{python_module lalframe >= 3.0.1}
BuildRequires:  %{python_module lalinference >= 4.1.3}
BuildRequires:  %{python_module lalmetaio >= 4.0.1}
BuildRequires:  %{python_module lalpulsar >= 6.0.1}
BuildRequires:  %{python_module matplotlib}
BuildRequires:  %{python_module numpy-devel}
BuildRequires:  %{python_module numpy}
BuildRequires:  %{python_module scipy}
BuildRequires:  cfitsio-devel
BuildRequires:  fdupes
BuildRequires:  openmpi-devel
BuildRequires:  pkgconfig
BuildRequires:  python-rpm-macros
BuildRequires:  swig
BuildRequires:  pkgconfig(fftw3)
BuildRequires:  pkgconfig(framel) >= 8.39.2
BuildRequires:  pkgconfig(gsl)
BuildRequires:  pkgconfig(lal) >= 7.3.0
BuildRequires:  pkgconfig(lalburst) >= 2.0.1
BuildRequires:  pkgconfig(lalframe) >= 3.0.1
BuildRequires:  pkgconfig(lalinference) >= 4.1.3
BuildRequires:  pkgconfig(lalinspiral) >= 4.0.2
BuildRequires:  pkgconfig(lalmetaio) >= 4.0.1
BuildRequires:  pkgconfig(lalpulsar) >= 6.0.1
BuildRequires:  pkgconfig(lalsimulation) >= 5.2.0
# SECTION For tests
BuildRequires:  %{python_module pytest}
BuildRequires:  bc
BuildRequires:  lalpulsar-data
Requires:       python3-%{name} = %{version}
# /SECTION
# SECTION Required for Patch2
BuildRequires:  libtool
# /SECTION
# 32-bit no longer supported upstream
ExcludeArch:    %{ix86}
%define python_subpackage_only 1
%python_subpackages

%description
The LSC Algorithm Library Applications for gravitational wave data analysis.
This package contains applications that are built on tools in the LSC
Algorithm Library.

%package -n python-%{name}
Summary:        LSC Algorithm Library Applications
Group:          Productivity/Scientific/Physics
Requires:       python-h5py
Requires:       python-lal >= 7.3.0
Requires:       python-lalburst >= 2.0.1
Requires:       python-lalframe >= 3.0.1
Requires:       python-lalinference >= 4.1.3
Requires:       python-lalmetaio >= 4.0.1
Requires:       python-lalpulsar >= 6.0.1
Requires:       python-ligo-lw
Requires:       python-ligo-segments
Requires:       python-matplotlib
Requires:       python-numpy
Requires:       python-scipy

%description -n python-%{name}
The LSC Algorithm Library Applications for gravitational wave data analysis.
This package contains applications that are built on tools in the LSC
Algorithm Library.

This package contains the python files

%prep
%autosetup -p1

%build
# Patch2 touches autotool files
autoreconf -fvi
%{python_expand # Necessary to run %%configure for all active python flavors
export PYTHON=%{_bindir}/$python
mkdir ../$python
cp -pr ./ ../$python
pushd ../$python
%configure --enable-swig
%make_build
popd
}

%install
%{python_expand # install for all active python flavors
export PYTHON=$python
pushd ../$python
%make_install
popd
}

# env-based hashbang /usr/bin/env tclsh => /usr/bin/tclsh
sed -Ei "1{s/env //}" %{buildroot}%{_bindir}/lalapps_CopySFTs

# SECTION EXPORT LAL SPECIFIC ENV VARIABLES
# We do not use upstream's env files because they also set more generic
# variables (e.g. PATH) which may ruin setups

# NUKE UPSTREAM ENV SCRIPTS
rm %{buildroot}%{_sysconfdir}/%{name}-user-env.*

cat << EOF >> %{name}.sh
export LALAPPS_PREFIX=%{_prefix}
export LALAPPS_DATADIR=%{_datadir}/%{name}
EOF

cat << EOF >> %{name}.csh
setenv LALAPPS_PREFIX "%{_prefix}"
setenv LALAPPS_DATADIR "%{_datadir}/%{name}"
EOF

cat << EOF >> %{name}.fish
set LALAPPS_PREFIX (echo "%{_prefix}" | %{_bindir}/sed -e 's| |:|g;')
set LALAPPS_DATADIR (echo "%{_datadir}/%{name}" | %{_bindir}/sed -e 's| |:|g;')
EOF

install -D -m0644 %{name}.sh %{buildroot}%{_sysconfdir}/profile.d/%{name}.sh
install -D -m0644 %{name}.csh %{buildroot}%{_sysconfdir}/profile.d/%{name}.csh
install -D -m0644 %{name}.fish %{buildroot}%{_sysconfdir}/profile.d/%{name}.fish

# /SECTION

# SECTION REMOVE STATIC LIB AND LIBTOOL ARCHIVE
find %{buildroot}%{_libdir}/ -name "*.a" -delete -print
find %{buildroot} -type f -name "*.la" -delete -print
# /SECTION

%python_expand %fdupes %{buildroot}%{$python_sitearch}/%{name}/
%fdupes %{buildroot}/%{_datadir}/%{name}/

%check
%{python_expand #
export PYTHON=$python
pushd ../$python
%make_build check
popd
}

%files -n %{name}
%license COPYING
%{_bindir}/*
%{_datadir}/lalapps/
%{_mandir}/man1/*
%config %{_sysconfdir}/profile.d/%{name}.*

%files %{python_files %{name}}
%{python_sitearch}/*

%changelog