Accepting request 809707 from home:badshah400:GW
NOTE: Depends on sr#809706 The LSC Algorithm Library Applications for gravitational wave data analysis. OBS-URL: https://build.opensuse.org/request/show/809707 OBS-URL: https://build.opensuse.org/package/show/science/lalapps?expand=0&rev=1
This commit is contained in:
Git OBS Bridge
commit
2110091cc2
23
.gitattributes
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23
.gitattributes
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.jar filter=lfs diff=lfs merge=lfs -text
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*.lz filter=lfs diff=lfs merge=lfs -text
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*.lzma filter=lfs diff=lfs merge=lfs -text
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*.obscpio filter=lfs diff=lfs merge=lfs -text
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*.oxt filter=lfs diff=lfs merge=lfs -text
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*.pdf filter=lfs diff=lfs merge=lfs -text
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*.png filter=lfs diff=lfs merge=lfs -text
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*.rpm filter=lfs diff=lfs merge=lfs -text
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*.tbz filter=lfs diff=lfs merge=lfs -text
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.ttf filter=lfs diff=lfs merge=lfs -text
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*.txz filter=lfs diff=lfs merge=lfs -text
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*.whl filter=lfs diff=lfs merge=lfs -text
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*.xz filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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1
.gitignore
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1
.gitignore
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.osc
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3
lalapps-6.25.1.tar.xz
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3
lalapps-6.25.1.tar.xz
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version https://git-lfs.github.com/spec/v1
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oid sha256:ef91dbe0c8926bd279b04ace327a61d5d88e14887b11664419edefa63e337224
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size 5002476
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74
lalapps-fix-uninitialised-var.patch
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74
lalapps-fix-uninitialised-var.patch
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Index: lalapps-6.24.0/src/string/StringSearch.c
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===================================================================
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--- lalapps-6.24.0.orig/src/string/StringSearch.c
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+++ lalapps-6.24.0/src/string/StringSearch.c
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@@ -203,7 +203,7 @@ int main(int argc,char *argv[])
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unsigned seg_length;
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StringTemplate strtemplate[MAXTEMPLATES];
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int NTemplates;
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- int NTemplates_fix; /* number of template given by the template bank file */
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+ int NTemplates_fix = 0; /* number of template given by the template bank file */
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REAL8 fcutoff_fix[MAXTEMPLATES]; /* high frequency cutoffs given by the template bank file */
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SnglBurst *events=NULL;
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MetadataTable process;
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Index: lalapps-6.24.0/src/pulsar/SFTTools/SFTvalidate.c
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===================================================================
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--- lalapps-6.24.0.orig/src/pulsar/SFTTools/SFTvalidate.c
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+++ lalapps-6.24.0/src/pulsar/SFTTools/SFTvalidate.c
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@@ -59,7 +59,7 @@ int main(int argc, char** argv) {
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/* and read successive SFTs blocks from the file and validate CRC
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checksums */
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for (count=0; 1; count++) {
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- struct headertag2 info,lastinfo;
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+ struct headertag2 info,lastinfo={};
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int err=0, swapendian, move, j;
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err=ReadSFTHeader(fp, &info, NULL, &swapendian, 1);
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Index: lalapps-6.24.0/src/pulsar/SFTTools/SFTdumpheader.c
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===================================================================
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--- lalapps-6.24.0.orig/src/pulsar/SFTTools/SFTdumpheader.c
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+++ lalapps-6.24.0/src/pulsar/SFTTools/SFTdumpheader.c
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@@ -54,7 +54,7 @@ int main(int argc, char **argv) {
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/* and read successive SFTs blocks from the file and print headers */
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for (count=0; 1; count++) {
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- struct headertag2 info,lastinfo;
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+ struct headertag2 info,lastinfo={};
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int err=0, swapendian, move;
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char *mycomment;
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Index: lalapps-6.24.0/src/pulsar/SFTTools/SFTdumpall.c
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===================================================================
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--- lalapps-6.24.0.orig/src/pulsar/SFTTools/SFTdumpall.c
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+++ lalapps-6.24.0/src/pulsar/SFTTools/SFTdumpall.c
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@@ -55,7 +55,7 @@ int main(int argc, char **argv) {
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/* and read successive SFTs blocks from the file and print headers */
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for (count=0; 1; count++) {
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- struct headertag2 info, lastinfo;
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+ struct headertag2 info, lastinfo={};
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int err=0, swapendian, move;
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char *mycomment;
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int whence = (int)ftell(fp);
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Index: lalapps-6.24.0/src/pulsar/HoughFstat/HierarchicalSearch.c
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===================================================================
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--- lalapps-6.24.0.orig/src/pulsar/HoughFstat/HierarchicalSearch.c
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+++ lalapps-6.24.0/src/pulsar/HoughFstat/HierarchicalSearch.c
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@@ -1270,7 +1270,7 @@ void SetUpSFTs( LALStatus *status, /**
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REAL8 timebase, tObs, deltaFsft;
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UINT4 k,numSFTby2;
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LIGOTimeGPS tStartGPS, tEndGPS, refTimeGPS, tMidGPS;
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- SFTCatalogSequence catalogSeq;
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+ SFTCatalogSequence catalogSeq = {};
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REAL8 doppWings, fMin, fMax;
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REAL8 startTime_freqLo, startTime_freqHi;
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@@ -1531,7 +1531,7 @@ void ComputeFstatHoughMap(LALStatus *sta
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LIGOTimeGPSVector *tsMid;
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REAL8Vector *timeDiffV=NULL;
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UINT8Vector hist; /* histogram vector */
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- UINT8Vector histTotal; /* total histogram vector */
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+ UINT8Vector histTotal = {}; /* total histogram vector */
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HoughStats stats; /* statistics struct */
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CHAR *fileStats = NULL;
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FILE *fpStats = NULL;
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63
lalapps.changes
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63
lalapps.changes
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-------------------------------------------------------------------
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Wed May 27 22:34:40 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
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- Fix package description.
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-------------------------------------------------------------------
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Mon Feb 3 01:32:43 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
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- Update to version 6.25.1
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* MakeSFTs.c: fix incorrect XLAL error checks
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- Changes from version 6.25.0:
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* O3b release
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- Update version numbers in BuildRequires and Requires in keeping
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with upstream.
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-------------------------------------------------------------------
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Mon Jan 20 22:45:54 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
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- Disable python2 builds to prepare for removal of py2 support;
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switch Requires to python3 modules.
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-------------------------------------------------------------------
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Tue Oct 1 14:13:06 UTC 2019 - Atri Bhattacharya <badshah400@gmail.com>
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- Build packages for both python2 and python3.
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-------------------------------------------------------------------
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Mon Jul 22 15:46:41 UTC 2019 - Atri Bhattacharya <badshah400@gmail.com>
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- Add lalapps-fix-uninitialised-var.patch: Fix usage of
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uninitialised variables.
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-------------------------------------------------------------------
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Mon Jul 22 14:40:08 UTC 2019 - Atri Bhattacharya <badshah400@gmail.com>
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- Update to version 6.24.0:
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* O3 release.
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- Drop patches incorporated upstream:
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* lalapps-gcc8-format-overflow-errors.patch
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* lalapps-truncation-errors-with-gcc82.patch
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* lalapps-drop-abandoned-code.patch.
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-------------------------------------------------------------------
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Fri Feb 8 13:32:21 UTC 2019 - badshah400@gmail.com
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- Switch builds to python2.
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- Switch installable package name to use python{2,3}- naming
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scheme.
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-------------------------------------------------------------------
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Fri Feb 8 13:01:54 UTC 2019 - badshah400@gmail.com
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- Explicitly use python3- for Requires.
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-------------------------------------------------------------------
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Thu Feb 7 14:59:25 UTC 2019 - badshah400@gmail.com
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- Update Requires for %{name}.
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-------------------------------------------------------------------
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Thu Feb 7 14:07:00 UTC 2019 - badshah400@gmail.com
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- Initial package
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151
lalapps.spec
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151
lalapps.spec
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#
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# spec file for package lalapps
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#
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# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%define skip_python2 1
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Name: lalapps
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Version: 6.25.1
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Release: 0
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Summary: LSC Algorithm Library Applications
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License: GPL-2.0-or-later
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Group: Productivity/Scientific/Physics
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URL: https://wiki.ligo.org/Computing/DASWG/LALSuite
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Source: http://software.ligo.org/lscsoft/source/lalsuite/%{name}-%{version}.tar.xz
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# PATCH-FIX-UPSTREAM lalapps-fix-uninitialised-var.patch badshah400@gmail.com -- Fix usage of uninitialised variable
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Patch0: lalapps-fix-uninitialised-var.patch
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BuildRequires: %{python_module astropy}
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BuildRequires: %{python_module devel}
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BuildRequires: %{python_module glue}
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BuildRequires: %{python_module lalburst >= 1.5.4}
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BuildRequires: %{python_module lalframe >= 1.5.0}
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BuildRequires: %{python_module lalinference >= 1.11.0}
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BuildRequires: %{python_module lalmetaio >= 1.6.0}
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BuildRequires: %{python_module lalpulsar >= 1.18.0}
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BuildRequires: %{python_module lal >= 6.21.0}
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BuildRequires: %{python_module matplotlib}
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BuildRequires: %{python_module numpy-devel}
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BuildRequires: %{python_module numpy}
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BuildRequires: %{python_module scipy}
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BuildRequires: cfitsio-devel
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BuildRequires: fdupes
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BuildRequires: openmpi-devel
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BuildRequires: pkgconfig
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BuildRequires: python-rpm-macros
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BuildRequires: swig
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BuildRequires: pkgconfig(fftw3)
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BuildRequires: pkgconfig(gsl)
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BuildRequires: pkgconfig(lal) >= 6.21.0
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BuildRequires: pkgconfig(lalburst) >= 1.5.4
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BuildRequires: pkgconfig(lalframe) >= 1.5.0
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BuildRequires: pkgconfig(lalinference) >= 1.11.0
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BuildRequires: pkgconfig(lalinspiral) >= 1.10.0
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BuildRequires: pkgconfig(lalmetaio) >= 1.6.0
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BuildRequires: pkgconfig(lalpulsar) >= 1.18.0
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BuildRequires: pkgconfig(lalsimulation) >= 1.10.0
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BuildRequires: pkgconfig(libframe)
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Requires: python3-lal >= 6.21.0
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Requires: python3-lalburst >= 1.5.4
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Requires: python3-lalframe >= 1.5.0
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Requires: python3-lalinference >= 1.11.0
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Requires: python3-lalinspiral >= 1.10.0
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Requires: python3-lalmetaio >= 1.6.0
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Requires: python3-lalpulsar >= 1.18.0
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Requires: python3-lalsimulation >= 1.10.0
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Requires: python3-numpy
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Requires: python3-scipy
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%python_subpackages
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%description
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The LSC Algorithm Library Applications for gravitational wave data analysis.
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This package contains applications that are built on tools in the LSC
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Algorithm Library.
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%prep
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%autosetup -p1
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# FIX env-BASED HASHBANGS
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sed -Ei "1{s|/usr/bin/env python|/usr/bin/python3|}" \
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src/pulsar/CrossCorr/*.py \
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src/pulsar/HeterodyneSearch/make_frame_cache
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%build
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||||||
|
%{python_expand # Necessary to run %%configure with both py2 and py3
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|
export PYTHON=%{_bindir}/$python
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||||||
|
mkdir ../$python
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||||||
|
cp -pr ./ ../$python
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||||||
|
pushd ../$python
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%configure --enable-swig
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|
make %{?_smp_mflags}
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|
popd
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||||||
|
}
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||||||
|
|
||||||
|
%install
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|
%{python_expand # py2 and py3 make_install
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|
export PYTHON=$python
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|
pushd ../$python
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|
%make_install
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||||||
|
popd
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|
}
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|
|
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|
# SECTION EXPORT LAL SPECIFIC ENV VARIABLES
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|
# We do not use upstream's env files because they also set more generic
|
||||||
|
# variables (e.g. PATH) which may ruin setups
|
||||||
|
|
||||||
|
# NUKE UPSTREAM ENV SCRIPTS
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|
rm %{buildroot}%{_sysconfdir}/%{name}-user-env.*
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||||||
|
cat << EOF >> %{name}.sh
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|
export LALAPPS_PREFIX=%{_prefix}
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|
export LALAPPS_DATADIR=%{_datadir}/%{name}
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||||||
|
EOF
|
||||||
|
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||||||
|
cat << EOF >> %{name}.csh
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|
setenv LALAPPS_PREFIX "%{_prefix}"
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||||||
|
setenv LALAPPS_DATADIR "%{_datadir}/%{name}"
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||||||
|
EOF
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||||||
|
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||||||
|
cat << EOF >> %{name}.fish
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|
set LALAPPS_PREFIX (echo "%{_prefix}" | %{_bindir}/sed -e 's| |:|g;')
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|
set LALAPPS_DATADIR (echo "%{_datadir}/%{name}" | %{_bindir}/sed -e 's| |:|g;')
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||||||
|
EOF
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||||||
|
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||||||
|
install -D -m0644 %{name}.sh %{buildroot}%{_sysconfdir}/profile.d/%{name}.sh
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||||||
|
install -D -m0644 %{name}.csh %{buildroot}%{_sysconfdir}/profile.d/%{name}.csh
|
||||||
|
install -D -m0644 %{name}.fish %{buildroot}%{_sysconfdir}/profile.d/%{name}.fish
|
||||||
|
|
||||||
|
# /SECTION
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||||||
|
|
||||||
|
# SECTION REMOVE STATIC LIB AND LIBTOOL ARCHIVE
|
||||||
|
find %{buildroot}%{_libdir}/ -name "*.a" -delete -print
|
||||||
|
find %{buildroot} -type f -name "*.la" -delete -print
|
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|
# /SECTION
|
||||||
|
|
||||||
|
%python_expand %fdupes %{buildroot}%{$python_sitearch}/%{name}/
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|
%fdupes %{buildroot}/%{_datadir}/%{name}/
|
||||||
|
|
||||||
|
%files -n %{name}
|
||||||
|
%license COPYING
|
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|
%{_bindir}/*
|
||||||
|
%{_datadir}/lalapps/
|
||||||
|
%{_mandir}/man1/*
|
||||||
|
%config %{_sysconfdir}/profile.d/%{name}.*
|
||||||
|
|
||||||
|
%files %{python_files}
|
||||||
|
%{python_sitearch}/*
|
||||||
|
|
||||||
|
%changelog
|
||||||
Loading…
Reference in New Issue
Block a user