Atri Bhattacharya
3528a24633
Add lalapps-disable-testWeave-for-non-x86_64.patch: Disable Weave related tests on all but x86_64 where tolerance errors show up, see https://git.ligo.org/lscsoft/lalsuite/-/issues/105, boo#1189928; introduces BuildRequires: libtool and requires running autoreconf before configure. OBS-URL: https://build.opensuse.org/request/show/919074 OBS-URL: https://build.opensuse.org/package/show/science/lalapps?expand=0&rev=13
198 lines
6.7 KiB
RPMSpec
198 lines
6.7 KiB
RPMSpec
#
|
|
# spec file for package lalapps
|
|
#
|
|
# Copyright (c) 2021 SUSE LLC
|
|
#
|
|
# All modifications and additions to the file contributed by third parties
|
|
# remain the property of their copyright owners, unless otherwise agreed
|
|
# upon. The license for this file, and modifications and additions to the
|
|
# file, is the same license as for the pristine package itself (unless the
|
|
# license for the pristine package is not an Open Source License, in which
|
|
# case the license is the MIT License). An "Open Source License" is a
|
|
# license that conforms to the Open Source Definition (Version 1.9)
|
|
# published by the Open Source Initiative.
|
|
|
|
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
|
#
|
|
|
|
|
|
%define skip_python2 1
|
|
# NEP 29: astropy, numpy, scipy do not have a python36 flavor package in TW
|
|
%define skip_python36 1
|
|
Name: lalapps
|
|
Version: 7.2.0
|
|
Release: 0
|
|
Summary: LSC Algorithm Library Applications
|
|
License: GPL-2.0-or-later
|
|
Group: Productivity/Scientific/Physics
|
|
URL: https://wiki.ligo.org/Computing/DASWG/LALSuite
|
|
Source: http://software.ligo.org/lscsoft/source/lalsuite/%{name}-%{version}.tar.xz
|
|
# PATCH-FIX-UPSTREAM lalapps-fix-uninitialised-var.patch badshah400@gmail.com -- Fix usage of uninitialised variable
|
|
Patch0: lalapps-fix-uninitialised-var.patch
|
|
# PATCH-FIX-UPSTREAM lalapps-gcc11-array-bounds-decl.patch badshah400@gmail.com -- Fix building with gcc 11 by correcting array bounds declaration; patch part of upstream merge request [https://git.ligo.org/lscsoft/lalsuite/-/merge_requests/1605]
|
|
Patch1: lalapps-gcc11-array-bounds-decl.patch
|
|
# PATCH-FIX-UPSTREAM lalapps-disable-testWeave-for-non-x86_64.patch badshah400@gmail.com -- Disable Weave related tests on all but x86_64 where tolerance errors show up, see https://git.ligo.org/lscsoft/lalsuite/-/issues/105
|
|
Patch2: lalapps-disable-testWeave-for-non-x86_64.patch
|
|
BuildRequires: %{python_module astropy}
|
|
BuildRequires: %{python_module devel}
|
|
BuildRequires: %{python_module glue}
|
|
BuildRequires: %{python_module lal >= 7.1.0}
|
|
BuildRequires: %{python_module lalburst >= 1.5.3}
|
|
BuildRequires: %{python_module lalframe >= 1.5.0}
|
|
BuildRequires: %{python_module lalinference >= 2.0.0}
|
|
BuildRequires: %{python_module lalmetaio >= 2.0.0}
|
|
BuildRequires: %{python_module lalpulsar >= 3.0.0}
|
|
BuildRequires: %{python_module matplotlib}
|
|
BuildRequires: %{python_module numpy-devel}
|
|
BuildRequires: %{python_module numpy}
|
|
BuildRequires: %{python_module scipy}
|
|
BuildRequires: cfitsio-devel
|
|
BuildRequires: fdupes
|
|
BuildRequires: openmpi-devel
|
|
BuildRequires: pkgconfig
|
|
BuildRequires: python-rpm-macros
|
|
BuildRequires: swig
|
|
BuildRequires: pkgconfig(fftw3)
|
|
BuildRequires: pkgconfig(framel) >= 8.39.2
|
|
BuildRequires: pkgconfig(gsl)
|
|
BuildRequires: pkgconfig(lal) >= 7.1.0
|
|
BuildRequires: pkgconfig(lalburst) >= 1.5.3
|
|
BuildRequires: pkgconfig(lalframe) >= 1.5.0
|
|
BuildRequires: pkgconfig(lalinference) >= 2.0.0
|
|
BuildRequires: pkgconfig(lalinspiral) >= 2.0.0
|
|
BuildRequires: pkgconfig(lalmetaio) >= 2.0.0
|
|
BuildRequires: pkgconfig(lalpulsar) >= 3.0.0
|
|
BuildRequires: pkgconfig(lalsimulation) >= 2.5.0
|
|
# SECTION For tests
|
|
BuildRequires: %{python_module pytest}
|
|
BuildRequires: bc
|
|
BuildRequires: lalpulsar-data
|
|
Requires: python3-%{name} = %{version}
|
|
# /SECTION
|
|
# SECTION Required for Patch2
|
|
BuildRequires: libtool
|
|
# /SECTION
|
|
# 32-bit no longer supported upstream
|
|
ExcludeArch: %{ix86}
|
|
%define python_subpackage_only 1
|
|
%python_subpackages
|
|
|
|
%description
|
|
The LSC Algorithm Library Applications for gravitational wave data analysis.
|
|
This package contains applications that are built on tools in the LSC
|
|
Algorithm Library.
|
|
|
|
%package -n python-%{name}
|
|
Summary: LSC Algorithm Library Applications
|
|
Group: Productivity/Scientific/Physics
|
|
Requires: python-h5py
|
|
Requires: python-lal >= 7.1.0
|
|
Requires: python-lalburst >= 1.5.3
|
|
Requires: python-lalframe >= 1.5.0
|
|
Requires: python-lalinference >= 2.0.0
|
|
Requires: python-lalinspiral >= 2.0.0
|
|
Requires: python-lalmetaio >= 2.0.0
|
|
Requires: python-lalpulsar >= 3.0.0
|
|
Requires: python-lalsimulation >= 2.5.0
|
|
Requires: python-ligo-lw
|
|
Requires: python-ligo-segments
|
|
Requires: python-matplotlib
|
|
Requires: python-numpy
|
|
Requires: python-scipy
|
|
|
|
%description -n python-%{name}
|
|
The LSC Algorithm Library Applications for gravitational wave data analysis.
|
|
This package contains applications that are built on tools in the LSC
|
|
Algorithm Library.
|
|
|
|
This package contains the python files
|
|
|
|
%prep
|
|
%autosetup -p1
|
|
|
|
# FIX env-BASED HASHBANGS
|
|
sed -Ei "1{s|/usr/bin/env python|%{_bindir}/python3|}" \
|
|
src/pulsar/HeterodyneSearch/make_frame_cache
|
|
|
|
%build
|
|
# Patch2 touches autotool files
|
|
autoreconf -fvi
|
|
%{python_expand # Necessary to run %%configure for all active python flavors
|
|
export PYTHON=%{_bindir}/$python
|
|
mkdir ../$python
|
|
cp -pr ./ ../$python
|
|
pushd ../$python
|
|
# FIXME: Failures because XLAL_ERROR implictly converts to function return type
|
|
export CFLAGS+=" -Wno-enum-conversion"
|
|
%configure --enable-swig
|
|
%make_build
|
|
popd
|
|
}
|
|
|
|
%install
|
|
%{python_expand # install for all active python flavors
|
|
export PYTHON=$python
|
|
pushd ../$python
|
|
%make_install
|
|
popd
|
|
}
|
|
|
|
# env-based hashbang /usr/bin/env tclsh => /usr/bin/tclsh
|
|
sed -Ei "1{s/env //}" %{buildroot}%{_bindir}/lalapps_CopySFTs
|
|
|
|
# SECTION EXPORT LAL SPECIFIC ENV VARIABLES
|
|
# We do not use upstream's env files because they also set more generic
|
|
# variables (e.g. PATH) which may ruin setups
|
|
|
|
# NUKE UPSTREAM ENV SCRIPTS
|
|
rm %{buildroot}%{_sysconfdir}/%{name}-user-env.*
|
|
|
|
cat << EOF >> %{name}.sh
|
|
export LALAPPS_PREFIX=%{_prefix}
|
|
export LALAPPS_DATADIR=%{_datadir}/%{name}
|
|
EOF
|
|
|
|
cat << EOF >> %{name}.csh
|
|
setenv LALAPPS_PREFIX "%{_prefix}"
|
|
setenv LALAPPS_DATADIR "%{_datadir}/%{name}"
|
|
EOF
|
|
|
|
cat << EOF >> %{name}.fish
|
|
set LALAPPS_PREFIX (echo "%{_prefix}" | %{_bindir}/sed -e 's| |:|g;')
|
|
set LALAPPS_DATADIR (echo "%{_datadir}/%{name}" | %{_bindir}/sed -e 's| |:|g;')
|
|
EOF
|
|
|
|
install -D -m0644 %{name}.sh %{buildroot}%{_sysconfdir}/profile.d/%{name}.sh
|
|
install -D -m0644 %{name}.csh %{buildroot}%{_sysconfdir}/profile.d/%{name}.csh
|
|
install -D -m0644 %{name}.fish %{buildroot}%{_sysconfdir}/profile.d/%{name}.fish
|
|
|
|
# /SECTION
|
|
|
|
# SECTION REMOVE STATIC LIB AND LIBTOOL ARCHIVE
|
|
find %{buildroot}%{_libdir}/ -name "*.a" -delete -print
|
|
find %{buildroot} -type f -name "*.la" -delete -print
|
|
# /SECTION
|
|
|
|
%python_expand %fdupes %{buildroot}%{$python_sitearch}/%{name}/
|
|
%fdupes %{buildroot}/%{_datadir}/%{name}/
|
|
|
|
%check
|
|
%{python_expand #
|
|
export PYTHON=$python
|
|
pushd ../$python
|
|
%make_build check
|
|
popd
|
|
}
|
|
|
|
%files -n %{name}
|
|
%license COPYING
|
|
%{_bindir}/*
|
|
%{_datadir}/lalapps/
|
|
%{_mandir}/man1/*
|
|
%config %{_sysconfdir}/profile.d/%{name}.*
|
|
|
|
%files %{python_files %{name}}
|
|
%{python_sitearch}/*
|
|
|
|
%changelog
|