diff -Pdpru matomo.orig/plugins/CoreUpdater/Commands/Update.php matomo/plugins/CoreUpdater/Commands/Update.php
--- matomo.orig/plugins/CoreUpdater/Commands/Update.php	2020-11-23 20:20:18.000000000 +0100
+++ matomo/plugins/CoreUpdater/Commands/Update.php	2020-11-24 14:16:58.087597130 +0100
@@ -70,7 +70,11 @@ class Update extends ConsoleCommand
                 $this->writeSuccessMessage($output, array(Piwik::translate('CoreUpdater_DbUpgradeNotExecuted')));
             }
 
+            // Only show if autoupdate is enabled. Don't show if update through distribution package update.
+            $enableAutoUpdate = (bool) Config::getInstance()->General['enable_auto_update'];
+            if ($enableAutoUpdate === true){
             $this->writeAlertMessageWhenCommandExecutedWithUnexpectedUser($output);
+            }
 
 
         } catch(NoUpdatesFoundException $e) {