Index: matomo/plugins/CoreUpdater/Commands/Update.php
===================================================================
--- matomo.orig/plugins/CoreUpdater/Commands/Update.php
+++ matomo/plugins/CoreUpdater/Commands/Update.php
@@ -79,8 +79,11 @@ class Update extends ConsoleCommand
                     $this->writeSuccessMessage($output, array(Piwik::translate('CoreUpdater_DbUpgradeNotExecuted')));
                 }
 
+                // Only show if autoupdate is enabled. Don't show if update through distribution package update.
+                $enableAutoUpdate = (bool) Config::getInstance()->General['enable_auto_update'];
+                if ($enableAutoUpdate === true){
                 $this->writeAlertMessageWhenCommandExecutedWithUnexpectedUser($output);
-
+                }
 
             } catch (NoUpdatesFoundException $e) {
                 // Do not fail if no updates were found