- Add Cast-function-pointer-types-so-they-can-be-compared-without-warnings.patch
to fix compilation issues with GCC >= 14 - Add workaround a missing bash function definition OBS-URL: https://build.opensuse.org/package/show/science:HPC/mpibash?expand=0&rev=15
This commit is contained in:
Git OBS Bridge
commit
362edef39a
23
.gitattributes
vendored
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23
.gitattributes
vendored
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.jar filter=lfs diff=lfs merge=lfs -text
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*.lz filter=lfs diff=lfs merge=lfs -text
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*.lzma filter=lfs diff=lfs merge=lfs -text
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*.obscpio filter=lfs diff=lfs merge=lfs -text
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*.oxt filter=lfs diff=lfs merge=lfs -text
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*.pdf filter=lfs diff=lfs merge=lfs -text
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*.png filter=lfs diff=lfs merge=lfs -text
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*.rpm filter=lfs diff=lfs merge=lfs -text
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*.tbz filter=lfs diff=lfs merge=lfs -text
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.ttf filter=lfs diff=lfs merge=lfs -text
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*.txz filter=lfs diff=lfs merge=lfs -text
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*.whl filter=lfs diff=lfs merge=lfs -text
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*.xz filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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1
.gitignore
vendored
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1
.gitignore
vendored
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.osc
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@ -0,0 +1,49 @@
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commit 4ae8e1670ea5495275bcf873cb2513302e56702a
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Author: Scott Pakin <pakin@lanl.gov>
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Date: Wed Feb 19 13:38:08 2020 -0700
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Cast function pointer types so they can be compared without warnings
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diff --git src/coll.c src/coll.c
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index 0ee5964fdd6a..890896a20b72 100644
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--- src/coll.c
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+++ src/coll.c
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@@ -122,7 +122,7 @@ static char *mpi_bcast_doc[] = {
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DEFINE_BUILTIN(mpi_bcast, "mpi_bcast [message] name");
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/* Define a reduction-type function (allreduce, scan, exscan, etc.). */
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-typedef int (*reduction_func_t)(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm);
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+typedef int (*reduction_func_t)(const void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm);
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/* Parse an operation name into an MPI_Op. Return 1 on success, 0 on
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* failure. */
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@@ -213,25 +213,25 @@ reduction_like (WORD_LIST *list, char *funcname, reduction_func_t func)
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/* Parse the target variable, which must not be read-only. */
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YES_ARGS(list);
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varname = list->word->word;
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- if (mpibash_rank != 0 || func != MPI_Exscan)
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+ if (mpibash_rank != 0 || (void *)func != (void *)MPI_Exscan)
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REQUIRE_WRITABLE(varname);
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list = list->next;
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no_args(list);
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/* Perform the reduction operation. Bind the given array variable
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* to the result and, for minloc/maxloc, the associated rank. */
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- if (mpibash_rank != 0 || func != MPI_Exscan) {
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+ if (mpibash_rank != 0 || (void *)func != (void *)MPI_Exscan) {
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bind_array_variable(varname, 0, "", 0);
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bind_array_variable(varname, 1, "", 0);
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}
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if (operation == MPI_MINLOC || operation == MPI_MAXLOC) {
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MPI_TRY(func(&number, &result, 1, MPI_LONG_INT, operation, MPI_COMM_WORLD));
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- if (mpibash_rank != 0 || func != MPI_Exscan)
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+ if (mpibash_rank != 0 || (void *)func != (void *)MPI_Exscan)
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mpibash_bind_array_variable_number(varname, 1, result.rank, 0);
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}
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else
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MPI_TRY(func(&number.value, &result.value, 1, MPI_LONG, operation, MPI_COMM_WORLD));
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- if (mpibash_rank != 0 || func != MPI_Exscan)
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+ if (mpibash_rank != 0 || (void *)func != (void *)MPI_Exscan)
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mpibash_bind_array_variable_number(varname, 0, result.value, 0);
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return EXECUTION_SUCCESS;
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}
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@ -0,0 +1,21 @@
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commit 16a19ee4c568047fb03581b23b4fcb273a615474
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Author: Scott Pakin <pakin@lanl.gov>
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Date: Wed Feb 19 13:43:40 2020 -0700
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Replace deprecated MPI_Errhandler_set with newer MPI_Comm_set_errhandler
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Resolves #17.
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diff --git src/init.c src/init.c
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index cd070a785c41..46b1127e538d 100644
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--- src/init.c
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+++ src/init.c
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@@ -77,7 +77,7 @@ mpi_init_builtin (WORD_LIST *list)
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/* Make MPI errors return instead of crash. Also, store our rank
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* and number of ranks. */
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- MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_RETURN);
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+ MPI_Comm_set_errhandler (MPI_COMM_WORLD, MPI_ERRORS_RETURN);
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MPI_Comm_rank (MPI_COMM_WORLD, &mpibash_rank);
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MPI_Comm_size (MPI_COMM_WORLD, &mpibash_num_ranks);
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3
mpibash-1.3.tar.gz
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3
mpibash-1.3.tar.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:ab39dcc0eadce765abaf685e73d38f4351e3229fdb4302aee4b9e6e70d431d99
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size 369803
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47
mpibash.changes
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47
mpibash.changes
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-------------------------------------------------------------------
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Thu Sep 5 13:29:03 UTC 2024 - Nicolas Morey <nicolas.morey@suse.com>
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- Add Cast-function-pointer-types-so-they-can-be-compared-without-warnings.patch
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to fix compilation issues with GCC >= 14
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- Add workaround a missing bash function definition
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-------------------------------------------------------------------
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Fri Feb 23 07:42:42 UTC 2024 - pgajdos@suse.com
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- Use %autosetup macro. Allows to eliminate the usage of deprecated
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%patchN
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-------------------------------------------------------------------
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Tue May 4 15:06:22 UTC 2021 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Add Replace-deprecated-MPI_Errhandler_set-with-newer-MPI_Comm_set_errhandler.patch
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to fix compilation with openmpi4
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-------------------------------------------------------------------
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Mon May 27 08:37:37 UTC 2019 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Always use the default openmpi
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-------------------------------------------------------------------
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Wed Nov 22 23:26:48 UTC 2017 - junghans@votca.org
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- Version bump to v1.3
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* drop 8.patch - got merge upstream
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* "This release includes a few bug fixes, a few improvements to
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the build process, and some extra information added to the
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documentation."
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-------------------------------------------------------------------
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Tue Nov 14 02:02:24 UTC 2017 - jengelh@inai.de
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- Ensure neutrality of description. Trim it subpackages.
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-------------------------------------------------------------------
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Fri Nov 10 16:09:11 UTC 2017 - junghans@votca.org
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- added 8.patch - circle_init_builtin: fix return value
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-------------------------------------------------------------------
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Fri Nov 10 15:41:49 UTC 2017 - junghans@votca.org
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- initial add of v1.2
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85
mpibash.spec
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85
mpibash.spec
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#
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# spec file for package mpibash
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#
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# Copyright (c) 2024 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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Name: mpibash
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Version: 1.3
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Release: 0
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Summary: Parallel scripting right from the Bourne-Again Shell
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License: GPL-3.0-or-later
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Group: Productivity/Networking/Other
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URL: https://github.com/lanl/MPI-Bash
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Source0: https://github.com/lanl/MPI-Bash/releases/download/v%{version}/mpibash-%{version}.tar.gz
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Patch0: Replace-deprecated-MPI_Errhandler_set-with-newer-MPI_Comm_set_errhandler.patch
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Patch1: Cast-function-pointer-types-so-they-can-be-compared-without-warnings.patch
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BuildRequires: bash-devel >= 4.4
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BuildRequires: libcircle-devel
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BuildRequires: openmpi-macros-devel
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%openmpi_requires
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BuildRoot: %{_tmppath}/%{name}-%{version}-build
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%description
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MPI-Bash makes it possible to parallelize Bash scripts which run a set of
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Linux commands independently over a large number of input files.
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Because MPI-Bash includes various MPI functions for data transfer and
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synchronization, it is not limited to parallel workloads
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but can incorporate phased operations (i.e. all workers must finish
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operation X before any worker is allowed to begin operation Y).
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%package examples
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Summary: Example Scripts for %{name}
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Group: Productivity/Scientific/Chemistry
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Requires: %{name} = %{version}
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%description examples
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MPI-Bash makes it possible to parallelize Bash scripts which run a set of
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Linux commands independently over a large number of input files.
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This package contains example scripts for mpibash.
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%prep
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%autosetup -p0
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%build
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%setup_openmpi
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# This is to avoid an issue with execute_shell_function which is declared in
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# /usr/include/bash/execute_cmd.h but it does not exists for "older" bash
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# versions. Once updatig to v1.4 (which will require this header), this flag should
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# be dropped
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export CFLAGS="-Wno-implicit-function-declaration"
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%configure --docdir=%{_docdir}/%{name} --with-plugindir=%{_libdir}/%{name}/ CC=mpicc
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%make_build
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%install
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%make_install
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# Fix shebang
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sed -i '1s@/usr/bin/env bash@/bin/bash@' %{buildroot}/%{_bindir}/mpibash
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sed -i '1s@env mpibash@mpibash@' %{buildroot}/%{_docdir}/%{name}/examples/* %{buildroot}/%{_bindir}/m*
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%files
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%defattr(-,root,root,-)
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%{_bindir}/m*
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%{_libdir}/%{name}/
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%{_mandir}/man1/m*
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%{_docdir}/%{name}
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%exclude %{_docdir}/%{name}/examples
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%files examples
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%defattr(-,root,root,-)
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%{_docdir}/%{name}/examples
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%changelog
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