Accepting request 882166 from home:eeich:branches:science:HPC
- Update to version 4.1.0 * collectives: Add HAN and ADAPT adaptive collectives components. Both components are off by default and can be enabled by specifying "mpirun --mca coll_adapt_priority 100 --mca coll_han_priority 100 ...". We intend to enable both by default in Open MPI 5.0. * OMPIO is now the default for MPI-IO on all filesystems, including Lustre (prior to this, ROMIO was the default for Lustre). Many thanks to Mark Dixon for identifying MPI I/O issues and providing access to Lustre systems for testing. * Minor MPI one-sided RDMA performance improvements. * Fix hcoll MPI_SCATTERV with MPI_IN_PLACE. * Add AVX support for MPI collectives. * Updates to mpirun(1) about "slots" and PE=x values. * Fix buffer allocation for large environment variables. Thanks to @zrss for reporting the issue. * Upgrade the embedded OpenPMIx to v3.2.2. * Fix issue with extra-long values in MCA files. Thanks to GitHub user @zrss for bringing the issue to our attention. * UCX: Fix zero-sized datatype transfers. * Fix --cpu-list for non-uniform modes. * Fix issue in PMIx callback caused by missing memory barrier on Arm platforms. * OFI MTL: Various bug fixes. * Fixed issue where MPI_TYPE_CREATE_RESIZED would create a datatype with unexpected extent on oddly-aligned datatypes. * collectives: Adjust default tuning thresholds for many collective algorithms * runtime: fix situation where rank-by argument does not work * Portals4: Clean up error handling corner cases * runtime: Remove --enable-install-libpmix option, which has not worked since it was added OBS-URL: https://build.opensuse.org/request/show/882166 OBS-URL: https://build.opensuse.org/package/show/science:HPC/openmpi4?expand=0&rev=12
This commit is contained in:
parent
7ca901bfb5
commit
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2
_service
2
_service
@ -8,7 +8,7 @@
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<param name="versionformat">@PARENT_TAG@.@TAG_OFFSET@.%h</param>
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<param name="versionrewrite-pattern">v(.*)</param>
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<param name="versionrewrite-replacement">\1</param>
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<param name="revision">88d8972a4085f6492dc38786c925f9dec446d49e</param>
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<param name="revision">9ac5471035b9066462506bc4d92be7a340a8058e</param>
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</service>
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<service name="recompress" mode="disabled">
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<param name="file">openmpi*.tar</param>
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@ -1,3 +0,0 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:96c05d6b25fb8781c41a6c2cda9cf069e265738557ce4c3dfdc35587fa1b88e7
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size 6301925
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3
openmpi-4.1.0.0.9ac5471035.tar.bz2
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3
openmpi-4.1.0.0.9ac5471035.tar.bz2
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@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:c6b9013b8fc5788371477d68b8a3273781c36b57600b4957af705aa70dc0688e
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size 6418922
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@ -1,3 +1,46 @@
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-------------------------------------------------------------------
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Wed Mar 24 08:01:35 UTC 2021 - Egbert Eich <eich@suse.com>
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- Update to version 4.1.0
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* collectives: Add HAN and ADAPT adaptive collectives components.
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Both components are off by default and can be enabled by specifying
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"mpirun --mca coll_adapt_priority 100 --mca coll_han_priority 100 ...".
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We intend to enable both by default in Open MPI 5.0.
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* OMPIO is now the default for MPI-IO on all filesystems, including
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Lustre (prior to this, ROMIO was the default for Lustre). Many
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thanks to Mark Dixon for identifying MPI I/O issues and providing
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access to Lustre systems for testing.
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* Minor MPI one-sided RDMA performance improvements.
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* Fix hcoll MPI_SCATTERV with MPI_IN_PLACE.
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* Add AVX support for MPI collectives.
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* Updates to mpirun(1) about "slots" and PE=x values.
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* Fix buffer allocation for large environment variables. Thanks to
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@zrss for reporting the issue.
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* Upgrade the embedded OpenPMIx to v3.2.2.
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* Fix issue with extra-long values in MCA files. Thanks to GitHub
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user @zrss for bringing the issue to our attention.
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* UCX: Fix zero-sized datatype transfers.
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* Fix --cpu-list for non-uniform modes.
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* Fix issue in PMIx callback caused by missing memory barrier on Arm platforms.
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* OFI MTL: Various bug fixes.
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* Fixed issue where MPI_TYPE_CREATE_RESIZED would create a datatype
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with unexpected extent on oddly-aligned datatypes.
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* collectives: Adjust default tuning thresholds for many collective
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algorithms
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* runtime: fix situation where rank-by argument does not work
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* Portals4: Clean up error handling corner cases
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* runtime: Remove --enable-install-libpmix option, which has not
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worked since it was added
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* UCX: Allow UCX 1.8 to be used with the btl uct
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* UCX: Replace usage of the deprecated NB API of UCX with NBX
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* OMPIO: Add support for the IME file system
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* OFI/libfabric: Added support for multiple NICs
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* OFI/libfabric: Added support for Scalable Endpoints
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* OFI/libfabric: Added btl for one-sided support
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* OFI/libfabric: Multiple small bugfixes
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* libnbc: Adding numerous performance-improving algorithms
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- Removed: reproducible.patch - replaced by spec file settings.
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-------------------------------------------------------------------
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Tue Sep 8 18:35:17 UTC 2020 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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@ -1,7 +1,7 @@
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#
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# spec file for package openmpi4
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#
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# Copyright (c) 2020 SUSE LLC
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# Copyright (c) 2021 SUSE LLC
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# Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
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# University Research and Technology
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# Corporation. All rights reserved.
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@ -42,8 +42,8 @@
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# % define build_static_devel 1
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%define pname openmpi
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%define vers 4.0.5
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%define _vers 4_0_5
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%define vers 4.1.0
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%define _vers 4_1_0
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%define m_f_ver 4
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%bcond_with ringdisabled
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@ -115,7 +115,7 @@ ExclusiveArch: do_not_build
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%global hpc_openmpi_pack_version %{hpc_openmpi_dep_version}
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%endif
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%define git_ver .0.88d8972a4085
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%define git_ver .0.9ac5471035
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#############################################################################
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#
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@ -135,7 +135,6 @@ Source2: openmpi4-rpmlintrc
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Source3: macros.hpc-openmpi
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Source4: mpivars.sh
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Source5: mpivars.csh
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Patch0: reproducible.patch
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Provides: mpi
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BuildRoot: %{_tmppath}/%{name}-%{version}-build
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BuildRequires: autoconf
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@ -401,8 +400,6 @@ openmpi%{m_f_ver}-libs
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EOF
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%endif
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%patch0 -p1
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# Live patch the VERSION file
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sed -i -e 's/^greek=.*$/greek=%{git_ver}/' -e 's/^repo_rev=.*$/repo_rev=%{version}%{git_ver}/' \
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-e 's/^date=.*$/date="OpenMPI %{version} Distribution for SUSE"/' VERSION
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@ -414,6 +411,7 @@ sed -i -e 's/^greek=.*$/greek=%{git_ver}/' -e 's/^repo_rev=.*$/repo_rev=%{versio
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#############################################################################
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%build
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# make build reproducible
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export USER=OBS
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export HOSTNAME=OBS
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%global _lto_cflags %{_lto_cflags} -ffat-lto-objects
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@ -1,126 +0,0 @@
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Author: Bernhard M. Wiedemann <bwiedemann suse de>
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Date: 2017-06-29
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make package build reproducible
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by using fixed date + hostname
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https://github.com/open-mpi/ompi/issues/3759
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https://bugzilla.opensuse.org/show_bug.cgi?id=1047218 packages do not build reproducibly from including build time
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https://bugzilla.opensuse.org/show_bug.cgi?id=1084909 +hostname
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Index: openmpi-4.0.0/autogen.pl
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===================================================================
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--- openmpi-4.0.0.orig/autogen.pl
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+++ openmpi-4.0.0/autogen.pl
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@@ -85,7 +85,7 @@ if ($^O eq "solaris") {
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}
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$username = getpwuid($>);
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-$full_hostname = `hostname`;
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+$full_hostname = "openSUSEnohostname";
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chomp($full_hostname);
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$hostname = $full_hostname;
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$hostname =~ s/^([\w\-]+)\..+/\1/;
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@@ -1190,7 +1190,7 @@ if (-e "orcm") {
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#---------------------------------------------------------------------------
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-$full_hostname = `hostname`;
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+$full_hostname = "openSUSEnohostname";
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chomp($full_hostname);
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$m4 = "dnl
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Index: openmpi-4.0.0/config/opal_functions.m4
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===================================================================
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--- openmpi-4.0.0.orig/config/opal_functions.m4
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+++ openmpi-4.0.0/config/opal_functions.m4
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@@ -94,9 +94,9 @@ EOF
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# Save some stats about this build
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#
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-OPAL_CONFIGURE_USER="`whoami`"
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-OPAL_CONFIGURE_HOST="`(hostname || uname -n) 2> /dev/null | sed 1q`"
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-OPAL_CONFIGURE_DATE="`date`"
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+OPAL_CONFIGURE_USER="openSUSEnowhoami"
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+OPAL_CONFIGURE_HOST="openSUSEnohostname"
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+OPAL_CONFIGURE_DATE="openSUSEnodate"
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OPAL_LIBNL_SANITY_INIT
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@@ -116,9 +116,9 @@ AC_DEFUN([OPAL_BASIC_SETUP],[
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# Save some stats about this build
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#
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-OPAL_CONFIGURE_USER="`whoami`"
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-OPAL_CONFIGURE_HOST="`(hostname || uname -n) 2> /dev/null | sed 1q`"
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-OPAL_CONFIGURE_DATE="`date`"
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+OPAL_CONFIGURE_USER="openSUSEnowhoami"
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+OPAL_CONFIGURE_HOST="openSUSEnohostname"
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+OPAL_CONFIGURE_DATE="openSUSEnodate"
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#
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# Make automake clean emacs ~ files for "make clean"
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Index: openmpi-4.0.0/config/opal_get_version.m4
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===================================================================
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--- openmpi-4.0.0.orig/config/opal_get_version.m4
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+++ openmpi-4.0.0/config/opal_get_version.m4
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@@ -91,7 +91,7 @@ m4_define([OPAL_GET_VERSION],[
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$2_REPO_REV=`git describe --tags --always`
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fi
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else
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- $2_REPO_REV="date`date '+%Y-%m-%d'`"
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+ $2_REPO_REV="date"
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fi
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fi
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Index: openmpi-4.0.0/ompi/tools/ompi_info/Makefile.am
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===================================================================
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--- openmpi-4.0.0.orig/ompi/tools/ompi_info/Makefile.am
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+++ openmpi-4.0.0/ompi/tools/ompi_info/Makefile.am
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@@ -27,9 +27,9 @@ AM_CFLAGS = \
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-DOPAL_CONFIGURE_USER="\"@OPAL_CONFIGURE_USER@\"" \
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-DOPAL_CONFIGURE_HOST="\"@OPAL_CONFIGURE_HOST@\"" \
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-DOPAL_CONFIGURE_DATE="\"@OPAL_CONFIGURE_DATE@\"" \
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- -DOMPI_BUILD_USER="\"$$USER\"" \
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- -DOMPI_BUILD_HOST="\"`(hostname || uname -n) 2> /dev/null | sed 1q`\"" \
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- -DOMPI_BUILD_DATE="\"`date`\"" \
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+ -DOMPI_BUILD_USER="\"USER\"" \
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+ -DOMPI_BUILD_HOST="\"openSUSEnohostname\"" \
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+ -DOMPI_BUILD_DATE="\"`date -u -r ../../../NEWS`\"" \
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-DOMPI_BUILD_CFLAGS="\"@CFLAGS@\"" \
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-DOMPI_BUILD_CPPFLAGS="\"@CPPFLAGS@\"" \
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-DOMPI_BUILD_CXXFLAGS="\"@CXXFLAGS@\"" \
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Index: openmpi-4.0.0/orte/tools/orte-info/Makefile.am
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===================================================================
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--- openmpi-4.0.0.orig/orte/tools/orte-info/Makefile.am
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+++ openmpi-4.0.0/orte/tools/orte-info/Makefile.am
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@@ -24,9 +24,9 @@ AM_CFLAGS = \
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-DOPAL_CONFIGURE_USER="\"@OPAL_CONFIGURE_USER@\"" \
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-DOPAL_CONFIGURE_HOST="\"@OPAL_CONFIGURE_HOST@\"" \
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-DOPAL_CONFIGURE_DATE="\"@OPAL_CONFIGURE_DATE@\"" \
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- -DOMPI_BUILD_USER="\"$$USER\"" \
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- -DOMPI_BUILD_HOST="\"`(hostname || uname -n) | sed 1q`\"" \
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- -DOMPI_BUILD_DATE="\"`date`\"" \
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+ -DOMPI_BUILD_USER="\"USER\"" \
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+ -DOMPI_BUILD_HOST="\"openSUSEnohostname\"" \
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+ -DOMPI_BUILD_DATE="\"`date -u -r ../../../NEWS`\"" \
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-DOMPI_BUILD_CFLAGS="\"@CFLAGS@\"" \
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-DOMPI_BUILD_CPPFLAGS="\"@CPPFLAGS@\"" \
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-DOMPI_BUILD_CXXFLAGS="\"@CXXFLAGS@\"" \
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Index: openmpi-4.0.0/oshmem/tools/oshmem_info/Makefile.am
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===================================================================
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--- openmpi-4.0.0.orig/oshmem/tools/oshmem_info/Makefile.am
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+++ openmpi-4.0.0/oshmem/tools/oshmem_info/Makefile.am
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@@ -16,9 +16,9 @@ AM_CPPFLAGS = \
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-DOPAL_CONFIGURE_USER="\"@OPAL_CONFIGURE_USER@\"" \
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-DOPAL_CONFIGURE_HOST="\"@OPAL_CONFIGURE_HOST@\"" \
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-DOPAL_CONFIGURE_DATE="\"@OPAL_CONFIGURE_DATE@\"" \
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- -DOMPI_BUILD_USER="\"$$USER\"" \
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- -DOMPI_BUILD_HOST="\"`(hostname || uname -n) 2> /dev/null | sed 1q`\"" \
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- -DOMPI_BUILD_DATE="\"`date`\"" \
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+ -DOMPI_BUILD_USER="\"USER\"" \
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+ -DOMPI_BUILD_HOST="\"openSUSEnohostname\"" \
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+ -DOMPI_BUILD_DATE="\"`date -u -r ../../../NEWS`\"" \
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-DOMPI_BUILD_CFLAGS="\"@CFLAGS@\"" \
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-DOMPI_BUILD_CPPFLAGS="\"@CPPFLAGS@\"" \
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-DOMPI_BUILD_CXXFLAGS="\"@CXXFLAGS@\"" \
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