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- Replace btl-openib-Add-VF-support-for-ConnectX-5-and-6.patch by btl-openib-Add-VF-support-for-ConnectX-4-5-and-6.patch to add ConnectX4 VF suppor OBS-URL: https://build.opensuse.org/request/show/1006488 OBS-URL: https://build.opensuse.org/package/show/science:HPC/openmpi4?expand=0&rev=22
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-------------------------------------------------------------------
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Fri Sep 23 10:24:16 UTC 2022 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Replace btl-openib-Add-VF-support-for-ConnectX-5-and-6.patch
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by btl-openib-Add-VF-support-for-ConnectX-4-5-and-6.patch to add ConnectX4 VF suppor
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-------------------------------------------------------------------
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Thu Sep 8 09:32:41 UTC 2022 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Enable libfabric on all arch
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- Switch to external libevent for all flavors
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- Switch to external hwloc and PMIx for HPC builds
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- Update rpmlintrc file to ignore missing libname suffix in libopenmpi packages
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- Add patch btl-openib-Add-VF-support-for-ConnectX-5-and-6.patch to support
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ConnectX 5 and 6 VF
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-------------------------------------------------------------------
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Wed Aug 3 08:18:34 UTC 2022 - Dirk Müller <dmueller@suse.com>
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- update to 4.1.4:
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* Fix possible length integer overflow in numerous non-blocking collective
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operations.
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* Fix segmentation fault in UCX if MPI Tool interface is finalized before
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MPI_Init is called.
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* Remove /usr/bin/python dependency in configure.
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* Fix OMPIO issue with long double etypes.
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* Update treematch topology component to fix numerous correctness issues.
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* Fix memory leak in UCX MCA parameter registration.
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* Fix long operation closing file descriptors on non-Linux systems that
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can appear as a hang to users.
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* Fix for attribute handling on GCC 11 due to pointer aliasing.
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* Fix multithreaded race in UCX PML's datatype handling.
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* Fix a correctness issue in CUDA Reduce algorithm.
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* Fix compilation issue with CUDA GPUDirect RDMA support.
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* Fix to make shmem_calloc(..., 0) conform to the OpenSHMEM specification.
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* Add UCC collectives component.
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* Fix divide by zero issue in OMPI IO component.
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* Fix compile issue with libnl when not in standard search locations.
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* Fixed a seg fault in the smcuda BTL. Thanks to Moritz Kreutzer and
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@Stadik for reporting the issue.
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* Added support for ELEMENTAL to the MPI handle comparison functions
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in the mpi_f08 module. Thanks to Salvatore Filippone for raising
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the issue.
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* Minor datatype performance improvements in the CUDA-based code paths.
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* Fix MPI_ALLTOALLV when used with MPI_IN_PLACE.
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* Fix MPI_BOTTOM handling for non-blocking collectives. Thanks to
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Lisandro Dalcin for reporting the problem.
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* Enable OPAL memory hooks by default for UCX.
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* Many compiler warnings fixes, particularly for newer versions of
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GCC.
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* Fix intercommunicator overflow with large payload collectives. Also
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fixed MPI_REDUCE_SCATTER_BLOCK for similar issues with large payload
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collectives.
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* Back-port ROMIO 3.3 fix to use stat64() instead of stat() on GPFS.
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* Fixed several non-blocking MPI collectives to not round fractions
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based on float precision.
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* Fix compile failure for --enable-heterogeneous. Also updated the
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README to clarify that --enable-heterogeneous is functional, but
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still not recomended for most environments.
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* Minor fixes to OMPIO, including:
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- Fixing the open behavior of shared memory shared file pointers.
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Thanks to Axel Huebl for reporting the issue
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- Fixes to clean up lockfiles when closing files. Thanks to Eric
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Chamberland for reporting the issue.
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* Update LSF configure failure output to be more clear (e.g., on RHEL
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platforms).
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* Update if_[in|ex]clude behavior in btl_tcp and oob_tcp to select
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*all* interfaces that fall within the specified subnet range.
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* ROMIO portability fix for OpenBSD
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* Fix handling of MPI_IN_PLACE with MPI_ALLTOALLW and improve performance
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of MPI_ALLTOALL and MPI_ALLTOALLV for MPI_IN_PLACE.
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* Fix one-sided issue with empty groups in Post-Start-Wait-Complete
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synchronization mode.
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* Fix Fortran status returns in certain use cases involving
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Generalized Requests
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* Romio datatype bug fixes.
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* Fix oshmem_shmem_finalize() when main() returns non-zero value.
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* Fix wrong affinity under LSF with the membind option.
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* Fix count==0 cases in MPI_REDUCE and MPI_IREDUCE.
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* Fix ssh launching on Bourne-flavored shells when the user has "set
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-u" set in their shell startup files.
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* Correctly process 0 slots with the mpirun --host option.
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* Ensure to unlink and rebind socket when the Open MPI session
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directory already exists.
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* Fix a segv in mpirun --disable-dissable-map.
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* Fix a potential hang in the memory hook handling.
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* Slight performance improvement in MPI_WAITALL when running in
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MPI_THREAD_MULTIPLE.
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* Fix hcoll datatype mapping and rooted operation behavior.
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* Correct some operations modifying MPI_Status.MPI_ERROR when it is
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disallowed by the MPI standard.
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* UCX updates:
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- Fix datatype reference count issues.
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- Detach dynamic window memory when freeing a window.
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- Fix memory leak in datatype handling.
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* Fix various atomic operations issues.
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* mpirun: try to set the curses winsize to the pty of the spawned
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task. Thanks to Stack Overflow user @Seriously for reporting the
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issue.
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* PMIx updates:
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- Fix compatibility with external PMIx v4.x installations.
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- Fix handling of PMIx v3.x compiler/linker flags. Thanks to Erik
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Schnetter for reporting the issue.
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- Skip SLURM-provided PMIx detection when appropriate. Thanks to
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Alexander Grund for reporting the issue.
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* Fix handling by C++ compilers when they #include the STL "<version>"
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header file, which ends up including Open MPI's text VERSION file
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(which is not C code). Thanks to @srpgilles for reporting the
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issue.
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* Fix MPI_Op support for MPI_LONG.
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* Make the MPI C++ bindings library (libmpi_cxx) explicitly depend on
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the OPAL internal library (libopen-pal). Thanks to Ye Luo for
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reporting the issue.
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* Fix configure handling of "--with-libevent=/usr".
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* Fix memory leak when opening Lustre files. Thanks to Bert Wesarg
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for submitting the fix.
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* Fix MPI_SENDRECV_REPLACE to correctly process datatype errors.
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Thanks to Lisandro Dalcin for reporting the issue.
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* Fix MPI_SENDRECV_REPLACE to correctly handle large data. Thanks
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Jakub Benda for reporting this issue and suggesting a fix.
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* Add workaround for TCP "dropped connection" errors to drastically
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reduce the possibility of this happening.
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* OMPIO updates:
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- Fix handling when AMODE is not set. Thanks to Rainer Keller for
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reporting the issue and supplying the fix.
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- Fix FBTL "posix" component linking issue. Thanks for Honggang Li
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for reporting the issue.
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- Fixed segv with MPI_FILE_GET_BYTE_OFFSET on 0-sized file view.
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- Thanks to GitHub user @shanedsnyder for submitting the issue.
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* OFI updates:
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- Multi-plane / Multi-Nic nic selection cleanups
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- Add support for exporting Open MPI memory monitors into
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Libfabric.
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- Ensure that Cisco usNIC devices are never selected by the OFI
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MTL.
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- Fix buffer overflow in OFI networking setup. Thanks to Alexander
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Grund for reporting the issue and supplying the fix.
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* Fix SSEND on tag matching networks.
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* Fix error handling in several MPI collectives.
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* Fix the ordering of MPI_COMM_SPLIT_TYPE. Thanks to Wolfgang
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Bangerth for raising the issue.
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* No longer install the orted-mpir library (it's an internal / Libtool
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convenience library). Thanks to Andrew Hesford for the fix.
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* PSM2 updates:
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- Allow advanced users to disable PSM2 version checking.
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- Fix to allow non-default installation locations of psm2.h.
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-------------------------------------------------------------------
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Wed Apr 28 11:08:54 UTC 2021 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- openmpi4 is now the default openmpi for releases > 15.3
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- Add orted-mpir-add-version-to-shared-library.patch to fix unversionned library
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- Change RPM macros install path to %{_rpmmacrodir}
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-------------------------------------------------------------------
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Wed Apr 28 09:24:33 UTC 2021 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Update to version 4.1.1
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- Fix a number of datatype issues, including an issue with
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improper handling of partial datatypes that could lead to
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an unexpected application failure.
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- Change UCX PML to not warn about MPI_Request leaks during
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MPI_FINALIZE by default. The old behavior can be restored with
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the mca_pml_ucx_request_leak_check MCA parameter.
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- Reverted temporary solution that worked around launch issues in
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SLURM v20.11.{0,1,2}. SchedMD encourages users to avoid these
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versions and to upgrade to v20.11.3 or newer.
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- Updated PMIx to v3.2.2.
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- Disabled gcc built-in atomics by default on aarch64 platforms.
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- Disabled UCX PML when UCX v1.8.0 is detected. UCX version 1.8.0 has a bug that
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may cause data corruption when its TCP transport is used in conjunction with
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the shared memory transport. UCX versions prior to v1.8.0 are not affected by
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this issue. Thanks to @ksiazekm for reporting the issue.
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- Fixed detection of available UCX transports/devices to better inform PML
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prioritization.
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- Fixed SLURM support to mark ORTE daemons as non-MPI tasks.
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- Improved AVX detection to more accurately detect supported
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platforms. Also improved the generated AVX code, and switched to
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using word-based MCA params for the op/avx component (vs. numeric
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big flags).
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- Improved OFI compatibility support and fixed memory leaks in error
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handling paths.
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- Improved HAN collectives with support for Barrier and Scatter. Thanks
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to @EmmanuelBRELLE for these changes and the relevant bug fixes.
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- Fixed MPI debugger support (i.e., the MPIR_Breakpoint() symbol).
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Thanks to @louisespellacy-arm for reporting the issue.
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- Fixed ORTE bug that prevented debuggers from reading MPIR_Proctable.
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- Removed PML uniformity check from the UCX PML to address performance
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regression.
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- Fixed MPI_Init_thread(3) statement about C++ binding and update
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references about MPI_THREAD_MULTIPLE. Thanks to Andreas Lösel for
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bringing the outdated docs to our attention.
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- Added fence_nb to Flux PMIx support to address segmentation faults.
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- Ensured progress of AIO requests in the POSIX FBTL component to
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prevent exceeding maximum number of pending requests on MacOS.
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- Used OPAL's mutli-thread support in the orted to leverage atomic
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operations for object refcounting.
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- Fixed segv when launching with static TCP ports.
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- Fixed --debug-daemons mpirun CLI option.
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- Fixed bug where mpirun did not honor --host in a managed job
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allocation.
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- Made a managed allocation filter a hostfile/hostlist.
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- Fixed bug to marked a generalized request as pending once initiated.
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- Fixed external PMIx v4.x check.
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- Fixed OSHMEM build with `--enable-mem-debug`.
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- Fixed a performance regression observed with older versions of GCC when
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__ATOMIC_SEQ_CST is used. Thanks to @BiplabRaut for reporting the issue.
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- Fixed buffer allocation bug in the binomial tree scatter algorithm when
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non-contiguous datatypes are used. Thanks to @sadcat11 for reporting the issue.
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- Fixed bugs related to the accumulate and atomics functionality in the
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osc/rdma component.
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- Fixed race condition in MPI group operations observed with
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MPI_THREAD_MULTIPLE threading level.
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- Fixed a deadlock in the TCP BTL's connection matching logic.
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- Fixed pml/ob1 compilation error when CUDA support is enabled.
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- Fixed a build issue with Lustre caused by unnecessary header includes.
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- Fixed a build issue with IMB LSF workload manager.
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- Fixed linker error with UCX SPML.
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-------------------------------------------------------------------
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Wed Mar 24 08:01:35 UTC 2021 - Egbert Eich <eich@suse.com>
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- Update to version 4.1.0
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* collectives: Add HAN and ADAPT adaptive collectives components.
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Both components are off by default and can be enabled by specifying
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"mpirun --mca coll_adapt_priority 100 --mca coll_han_priority 100 ...".
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We intend to enable both by default in Open MPI 5.0.
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* OMPIO is now the default for MPI-IO on all filesystems, including
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Lustre (prior to this, ROMIO was the default for Lustre). Many
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thanks to Mark Dixon for identifying MPI I/O issues and providing
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access to Lustre systems for testing.
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* Minor MPI one-sided RDMA performance improvements.
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* Fix hcoll MPI_SCATTERV with MPI_IN_PLACE.
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* Add AVX support for MPI collectives.
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* Updates to mpirun(1) about "slots" and PE=x values.
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* Fix buffer allocation for large environment variables. Thanks to
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@zrss for reporting the issue.
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* Upgrade the embedded OpenPMIx to v3.2.2.
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* Fix issue with extra-long values in MCA files. Thanks to GitHub
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user @zrss for bringing the issue to our attention.
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* UCX: Fix zero-sized datatype transfers.
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* Fix --cpu-list for non-uniform modes.
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* Fix issue in PMIx callback caused by missing memory barrier on Arm platforms.
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* OFI MTL: Various bug fixes.
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* Fixed issue where MPI_TYPE_CREATE_RESIZED would create a datatype
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with unexpected extent on oddly-aligned datatypes.
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* collectives: Adjust default tuning thresholds for many collective
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algorithms
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* runtime: fix situation where rank-by argument does not work
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* Portals4: Clean up error handling corner cases
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* runtime: Remove --enable-install-libpmix option, which has not
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worked since it was added
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* UCX: Allow UCX 1.8 to be used with the btl uct
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* UCX: Replace usage of the deprecated NB API of UCX with NBX
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* OMPIO: Add support for the IME file system
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* OFI/libfabric: Added support for multiple NICs
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* OFI/libfabric: Added support for Scalable Endpoints
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* OFI/libfabric: Added btl for one-sided support
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* OFI/libfabric: Multiple small bugfixes
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* libnbc: Adding numerous performance-improving algorithms
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- Removed: reproducible.patch - replaced by spec file settings.
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-------------------------------------------------------------------
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Tue Sep 8 18:35:17 UTC 2020 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Update to version 4.0.5
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- See NEWS for the detailled changelog
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-------------------------------------------------------------------
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Thu Jun 11 08:42:56 UTC 2020 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Update to version 4.0.4
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- See NEWS for the detailled changelog
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-------------------------------------------------------------------
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Tue Jun 9 08:40:06 UTC 2020 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Update to version 4.0.3
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- See NEWS for the detailled changelog
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- Fixes compilation with UCX 1.8
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- Drop memory-patcher-fix-compiler-warning.patch which was merged upstream
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-------------------------------------------------------------------
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Thu Mar 19 08:28:04 UTC 2020 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Drop different package string between SLES and Leap
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-------------------------------------------------------------------
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Wed Jan 15 09:05:14 UTC 2020 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Add memory-patcher-fix-compiler-warning.patch to fix 64bit portability issues
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-------------------------------------------------------------------
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Thu Oct 31 17:05:14 UTC 2019 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Link against libnuma (bsc#1155120)
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-------------------------------------------------------------------
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Thu Oct 24 14:40:07 UTC 2019 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>
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- Initial version (4.0.2)
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- Add reproducible.patch for reproducible builds.
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