Accepting request 717721 from devel:languages:python:numeric

OBS-URL: https://build.opensuse.org/request/show/717721
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-GridDataFormats?expand=0&rev=2

GridDataFormats-0.4.0.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:f81d6b75aa7ebd9e8b64e14558c2d2583a0589829382beb4ef69860110261512
-size 63643

GridDataFormats-0.5.0.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f317ed60708de22d1b2a76ce89a00f722d903291b1055ff1018d441870c39d69
+size 1982315

no_float128.patch

@@ -1,24 +0,0 @@
-From 069422d54344034b8f31bb19eee8a097b582c0e1 Mon Sep 17 00:00:00 2001
-From: Dominik 'Rathann' Mierzejewski <dominik@greysector.net>
-Date: Fri, 19 Jan 2018 14:56:52 +0100
-Subject: [PATCH] use longdouble instead of float128 in
- test_write_dx_ValueError
-
-float128 doesn't exist on 32-bit arches and longdouble maps to float96
-there. See also https://github.com/numpy/numpy/issues/5272 .
-This fixes issue #44.
----
- gridData/tests/test_dx.py | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/gridData/tests/test_dx.py b/gridData/tests/test_dx.py
-index 9c7714b..36c1e81 100644
---- a/gridData/tests/test_dx.py
-+++ b/gridData/tests/test_dx.py
-@@ -85,5 +85,5 @@ def test_write_dx_byte(nptype="uint8", dxtype="byte"):
- 
- 
- @raises(ValueError)
--def test_write_dx_ValueError(nptype="float128", dxtype="unknown"):
-+def test_write_dx_ValueError(nptype="longdouble", dxtype="unknown"):
-     return _test_write_dx(nptype=nptype, dxtype=dxtype)

python-GridDataFormats.changes

@@ -1,3 +1,20 @@
+-------------------------------------------------------------------
+Tue Jul 23 02:20:35 UTC 2019 - Todd R <toddrme2178@gmail.com>
+
+- Update to 0.5.0
+  + Changes
+    * supported/tested on Python 2.7, >=3.5 (official 3.4 support was
+      dropped: it might still work but is not tested anymore)
+  + Enhancements
+    * Allow parsing DX files by NAMD's GridForces module (new typequote keyword)
+    * New keyword argument ``Grid(grid=<file>, file_format=<str>)`` to set file format when
+      reading from a file
+  + Fixes
+    * Allow parsing DX files by Pymol's buggy floating-point parser
+    * Fixed loading of pickle files with .pkl suffix
+    * Better input handling when constructing a Grid object
+- Remove upstream-included no_float128.patch
+
 -------------------------------------------------------------------
 Tue May 15 18:49:17 UTC 2018 - toddrme2178@gmail.com
 

python-GridDataFormats.spec

@@ -1,7 +1,7 @@
 #
 # spec file for package python-GridDataFormats
 #
-# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
+# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
 #
 # All modifications and additions to the file contributed by third parties
 # remain the property of their copyright owners, unless otherwise agreed
@@ -15,32 +15,25 @@
 # Please submit bugfixes or comments via http://bugs.opensuse.org/
 #
 
-
-# Tests fail due to missing test directory
-%bcond_without tests
-
 %{?!python_module:%define python_module() python-%{**} python3-%{**}}
 Name:           python-GridDataFormats
-Version:        0.4.0
+Version:        0.5.0
 Release:        0
 Summary:        Python Tools for Reading and writing of data on regular grids
 License:        GPL-3.0
 Group:          Development/Libraries/Python
 Url:            https://github.com/MDAnalysis/GridDataFormats/
 Source0:        https://files.pythonhosted.org/packages/source/G/GridDataFormats/GridDataFormats-%{version}.tar.gz
-# PATCH-FIX-UPSTREAM no_float128.patch -- https://github.com/MDAnalysis/GridDataFormats/issues/44
-Patch0:         no_float128.patch
-BuildRequires:  fdupes
-BuildRequires:  python-rpm-macros
-BuildRequires:  %{python_module devel}
-BuildRequires:  %{python_module setuptools}
-BuildRequires:  %{python_module paramiko}
 BuildRequires:  %{python_module numpy >= 1.0.3}
+BuildRequires:  %{python_module paramiko}
+BuildRequires:  %{python_module setuptools}
 BuildRequires:  %{python_module six}
 BuildRequires:  %{python_module xml}
-%if %{with tests}
-BuildRequires:  %{python_module nose}
-%endif
+BuildRequires:  fdupes
+BuildRequires:  python-rpm-macros
+# SECTION test requirements
+BuildRequires:  %{python_module pytest}
+# /SECTION
 Requires:       python-numpy >= 1.0.3
 Requires:       python-six
 Requires:       python-xml
@@ -56,7 +49,6 @@ write out the data again.
 
 %prep
 %setup -n GridDataFormats-%{version}
-%patch0 -p1
 
 %build
 %python_build
@@ -65,13 +57,10 @@ write out the data again.
 %python_install
 %python_expand %fdupes %{buildroot}%{$python_sitelib}
 
-%if %{with tests}
 %check
-%python_expand nosetests-%{$python_bin_suffix}
-%endif
+%pytest
 
 %files %{python_files}
-%defattr(-,root,root)
 %doc AUTHORS CHANGELOG README.rst
 %license COPYING*
 %{python_sitelib}/gridData