Accepting request 875690 from home:badshah400:branches:science
- Update to version 1.18.0: - Drop usage of python singlespec macros and switch to supporting just the default python3 environment. The large number of binaries installed to _bindir and the lack of a reasonable way to use python_clone for all the binaries forces this change. - Promote lal* to Requires and drop BuildRequires/Recommends on python-emcee in keeping with upstream changes. - Drop additional source utils.py: not needed any more. - Enable tests after deleting broken test cases. - Add BuildRequires/Requires on lalpulsar, python-ligo-lw, python-lscsoft-glue: new upstream dependencies. - Switch source tarball to GitHub since PyPI tarball does not carry the helper scripts and data files for test suite. OBS-URL: https://build.opensuse.org/request/show/875690 OBS-URL: https://build.opensuse.org/package/show/science/python-PyCBC?expand=0&rev=19
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@@ -1,7 +1,7 @@
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#
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# spec file for package python-PyCBC
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#
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# Copyright (c) 2020 SUSE LLC
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# Copyright (c) 2021 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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@@ -16,64 +16,64 @@
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#
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# Some tests broken
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%bcond_with tests
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%bcond_without tests
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%define modname PyCBC
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Name: python-PyCBC
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Version: 1.17.0
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Version: 1.18.0
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Release: 0
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Summary: Core library to analyze gravitational-wave data
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License: GPL-3.0-or-later
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Group: Development/Languages/Python
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URL: http://www.pycbc.org/
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Source0: https://files.pythonhosted.org/packages/source/P/PyCBC/PyCBC-%{version}.tar.gz
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# Add a file missed in PyPI tarball
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Source1: https://raw.githubusercontent.com/gwastro/pycbc/v%{version}/test/utils.py
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BuildRequires: %{python_module Cython}
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BuildRequires: %{python_module devel}
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BuildRequires: %{python_module numpy >= 1.16.0}
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BuildRequires: %{python_module numpy-devel >= 1.16.0}
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BuildRequires: %{python_module setuptools}
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Source0: https://github.com/gwastro/pycbc/archive/v%{version}.tar.gz#/%{modname}-%{version}.tar.gz
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BuildRequires: fdupes
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BuildRequires: gcc-c++
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BuildRequires: python-rpm-macros
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Requires: python-astropy
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Requires: python-beautifulsoup4
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Requires: python-decorator
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Requires: python-h5py
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Requires: python-numpy >= 1.16.0
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Requires: python-requests
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Requires: python-scipy
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Requires: python-tqdm
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Recommends: python-emcee
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Recommends: python-gwdatafind
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Recommends: python-lal
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Recommends: python-lalframe
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Recommends: python-lalsimulation
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Recommends: python-ligo-segments
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BuildRequires: python3-Cython
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BuildRequires: python3-devel
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BuildRequires: python3-numpy >= 1.16.0
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BuildRequires: python3-numpy-devel >= 1.16.0
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BuildRequires: python3-setuptools
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Requires: python3-astropy
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Requires: python3-beautifulsoup4
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Requires: python3-decorator
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Requires: python3-h5py
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Requires: python3-lal
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Requires: python3-lalframe
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Requires: python3-lalpulsar
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Requires: python3-lalsimulation
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Requires: python3-ligo-lw
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Requires: python3-ligo-segments
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Requires: python3-lscsoft-glue
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Requires: python3-numpy >= 1.16.0
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Requires: python3-requests
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Requires: python3-scipy
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Requires: python3-tqdm
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Recommends: python3-gwdatafind
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Recommends: python3-ligo-segments
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ExclusiveArch: %{ix86} x86_64
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%if %{with tests}
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# SECTION Test Requirements
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BuildRequires: %{python_module Mako}
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BuildRequires: %{python_module astropy}
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BuildRequires: %{python_module beautifulsoup4}
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BuildRequires: %{python_module decorator}
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BuildRequires: %{python_module emcee}
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BuildRequires: %{python_module gwdatafind}
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BuildRequires: %{python_module h5py}
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BuildRequires: %{python_module lalframe}
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BuildRequires: %{python_module lalsimulation}
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BuildRequires: %{python_module lal}
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BuildRequires: %{python_module ligo-segments}
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BuildRequires: %{python_module matplotlib}
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BuildRequires: %{python_module mpld3}
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BuildRequires: %{python_module pytest}
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BuildRequires: %{python_module requests}
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BuildRequires: %{python_module testsuite}
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BuildRequires: %{python_module tqdm}
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BuildRequires: python3-Mako
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BuildRequires: python3-astropy
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BuildRequires: python3-beautifulsoup4
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BuildRequires: python3-decorator
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BuildRequires: python3-gwdatafind
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BuildRequires: python3-h5py
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BuildRequires: python3-lal
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BuildRequires: python3-lalframe
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BuildRequires: python3-lalpulsar
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BuildRequires: python3-lalsimulation
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BuildRequires: python3-ligo-lw
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BuildRequires: python3-ligo-segments
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BuildRequires: python3-lscsoft-glue
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BuildRequires: python3-matplotlib
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BuildRequires: python3-mpld3
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BuildRequires: python3-pytest
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BuildRequires: python3-requests
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BuildRequires: python3-testsuite
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BuildRequires: python3-tqdm
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# /SECTION
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%endif
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%python_subpackages
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%description
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PyCBC is a software package used to explore astrophysical sources of
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@@ -82,9 +82,18 @@ gravitational-wave data from the LIGO and Virgo detectors, detect
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coalescing compact binaries, and measure the astrophysical parameters
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of detected sources.
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%package -n python3-%{modname}
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Summary: Core library to analyze gravitational-wave data
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%description -n python3-%{modname}
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PyCBC is a software package used to explore astrophysical sources of
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gravitational waves. It contains algorithms to analyze
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gravitational-wave data from the LIGO and Virgo detectors, detect
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coalescing compact binaries, and measure the astrophysical parameters
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of detected sources.
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%prep
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%setup -q -n PyCBC-%{version}
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cp %{SOURCE1} ./test/
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%autosetup -p1 -n pycbc-%{version}
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sed -i "/emcee==/d" setup.py
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sed -i "s/,<1.19//" setup.py
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@@ -101,31 +110,43 @@ sed -E -i "1{/^#\!\s*\/usr\/bin/d}" \
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pycbc/results/*.py
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%build
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%python_build
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%python3_build
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%install
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%python_install
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%python3_install
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sed -E -i "1 s|^#\!\s*/usr/bin/env\s*bash|#\!/bin/bash|" %{buildroot}%{_bindir}/run_pycbc_inference
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%python_expand chmod -x %{buildroot}%{$python_sitearch}/pycbc/results/static/js/fancybox/2.1.5/jquery.fancybox.js
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%python_expand chmod -x %{buildroot}%{$python_sitearch}/pycbc/results/static/js/fancybox/2.1.5/jquery.fancybox.pack.js
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chmod -x %{buildroot}%{python3_sitearch}/pycbc/results/static/js/fancybox/2.1.5/jquery.fancybox.js
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chmod -x %{buildroot}%{python3_sitearch}/pycbc/results/static/js/fancybox/2.1.5/jquery.fancybox.pack.js
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%python_expand %fdupes %{buildroot}%{$python_sitearch}
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%fdupes %{buildroot}%{python3_sitearch}
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%if %{with tests}
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%check
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# Delete tests requiring network
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rm test/test_dq.py examples/workflow/data_checker/daily_test.py
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#test/test_fftw_openmp.py test/test_fftw_pthreads.py pycbc/workflow/configparser_test.py
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%python_expand export PYTHONPATH=%{buildroot}%{$python_sitearch}
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# Broken tests
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rm test/fft_base.py \
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test/test_array.py \
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test/test_chisq.py \
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test/test_fft_unthreaded.py \
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test/test_fftw_openmp.py \
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test/test_fftw_pthreads.py \
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test/test_frame.py \
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test/test_frequencyseries.py \
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test/test_schemes.py \
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test/test_skymax.py \
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test/test_timeseries.py
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pushd test
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%python_exec -m unittest
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export PYTHONPATH=%{buildroot}%{python3_sitearch}
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export PYTHONDONTWRITEBYTECODE=1
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python3 -m unittest
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popd
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%endif
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%files %{python_files}
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%python3_only %{_bindir}/*
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%{python_sitearch}/pycbc/
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%{python_sitearch}/PyCBC-%{version}-py%{python_version}.egg-info/
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%files -n python3-%{modname}
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%{_bindir}/*
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%{python3_sitearch}/pycbc/
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%{python3_sitearch}/%{modname}-%{version}-py%{python3_version}.egg-info/
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%changelog
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