Accepting request 949969 from home:badshah400:branches:science
- Update to version 2.0.1. - Split out utilities into new package called PyCBC-utils, which requires the default py3 flavour. - Build the python module itself for all supported python flavours; disable python2 which is no longer supported by PyCBC or its dependencies. - Run tests using pytest; note that using the pytest_arch macro leads to errors, so we largely replicate its behaviour except for running pytest itself without any options passed to it. - Re-check which tests work and rm those which do not to avoid module import errors. - New BuildRequires: python-pyFFTW. OBS-URL: https://build.opensuse.org/request/show/949969 OBS-URL: https://build.opensuse.org/package/show/science/python-PyCBC?expand=0&rev=22
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Matthias Mailänder
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@@ -1,7 +1,7 @@
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#
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# spec file for package python-PyCBC
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#
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# Copyright (c) 2021 SUSE LLC
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# Copyright (c) 2022 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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@@ -18,62 +18,68 @@
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%bcond_without tests
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# Python2 no longer supported by PyCBC
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%define skip_python2 1
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%define modname PyCBC
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Name: python-PyCBC
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Version: 1.18.0
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Version: 2.0.1
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Release: 0
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Summary: Core library to analyze gravitational-wave data
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License: GPL-3.0-or-later
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URL: http://www.pycbc.org/
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Source0: https://github.com/gwastro/pycbc/archive/v%{version}.tar.gz#/%{modname}-%{version}.tar.gz
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BuildRequires: %{python_module Cython}
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BuildRequires: %{python_module devel}
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BuildRequires: %{python_module numpy-devel}
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BuildRequires: %{python_module numpy}
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BuildRequires: %{python_module setuptools}
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BuildRequires: fdupes
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BuildRequires: gcc-c++
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BuildRequires: python3-Cython
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BuildRequires: python3-devel
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BuildRequires: python3-numpy >= 1.16.0
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BuildRequires: python3-numpy-devel >= 1.16.0
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BuildRequires: python3-setuptools
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Requires: python3-astropy
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Requires: python3-beautifulsoup4
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Requires: python3-decorator
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Requires: python3-h5py
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Requires: python3-lal
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Requires: python3-lalframe
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Requires: python3-lalpulsar
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Requires: python3-lalsimulation
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Requires: python3-ligo-lw
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Requires: python3-ligo-segments
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Requires: python3-lscsoft-glue
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Requires: python3-numpy >= 1.16.0
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Requires: python3-requests
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Requires: python3-scipy
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Requires: python3-tqdm
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Recommends: python3-gwdatafind
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Recommends: python3-ligo-segments
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BuildRequires: python-rpm-macros
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Requires: python-astropy
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Requires: python-beautifulsoup4
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Requires: python-decorator
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Requires: python-h5py
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Requires: python-lal
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Requires: python-lalframe
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Requires: python-lalpulsar
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Requires: python-lalsimulation
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Requires: python-ligo-lw
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Requires: python-ligo-segments
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Requires: python-lscsoft-glue
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Requires: python-numpy
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Requires: python-requests
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Requires: python-scipy
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Requires: python-tqdm
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Recommends: python-gwdatafind
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Recommends: python-ligo-segments
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ExclusiveArch: x86_64
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%if %{with tests}
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# SECTION Test Requirements
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BuildRequires: python3-Mako
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BuildRequires: python3-astropy
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BuildRequires: python3-beautifulsoup4
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BuildRequires: python3-decorator
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BuildRequires: python3-gwdatafind
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BuildRequires: python3-h5py
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BuildRequires: python3-lal
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BuildRequires: python3-lalframe
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BuildRequires: python3-lalpulsar
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BuildRequires: python3-lalsimulation
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BuildRequires: python3-ligo-lw
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BuildRequires: python3-ligo-segments
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BuildRequires: python3-lscsoft-glue
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BuildRequires: python3-matplotlib
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BuildRequires: python3-mpld3
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BuildRequires: python3-pytest
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BuildRequires: python3-requests
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BuildRequires: python3-testsuite
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BuildRequires: python3-tqdm
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BuildRequires: %{python_module Mako}
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BuildRequires: %{python_module astropy}
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BuildRequires: %{python_module beautifulsoup4}
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BuildRequires: %{python_module decorator}
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BuildRequires: %{python_module gwdatafind}
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BuildRequires: %{python_module h5py}
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BuildRequires: %{python_module lalframe}
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BuildRequires: %{python_module lalpulsar}
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BuildRequires: %{python_module lalsimulation}
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BuildRequires: %{python_module lal}
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BuildRequires: %{python_module ligo-lw}
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BuildRequires: %{python_module ligo-segments}
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BuildRequires: %{python_module lscsoft-glue}
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BuildRequires: %{python_module matplotlib}
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BuildRequires: %{python_module mpld3}
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BuildRequires: %{python_module pyFFTW}
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BuildRequires: %{python_module pytest}
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BuildRequires: %{python_module requests}
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BuildRequires: %{python_module testsuite}
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BuildRequires: %{python_module tqdm}
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# /SECTION
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%endif
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%python_subpackages
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%description
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PyCBC is a software package used to explore astrophysical sources of
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@@ -82,16 +88,20 @@ gravitational-wave data from the LIGO and Virgo detectors, detect
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coalescing compact binaries, and measure the astrophysical parameters
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of detected sources.
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%package -n python3-%{modname}
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Summary: Core library to analyze gravitational-wave data
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%package -n %{modname}-utils
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Summary: PyCBC utilities to analyze gravitational-wave data
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Requires: python3-PyCBC
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%description -n python3-%{modname}
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%description -n %{modname}-utils
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PyCBC is a software package used to explore astrophysical sources of
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gravitational waves. It contains algorithms to analyze
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gravitational-wave data from the LIGO and Virgo detectors, detect
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coalescing compact binaries, and measure the astrophysical parameters
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of detected sources.
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This package provides PyCBC utility programs that are built against
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the default python3 flavour.
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%prep
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%autosetup -p1 -n pycbc-%{version}
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sed -i "/emcee==/d" setup.py
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@@ -110,43 +120,43 @@ sed -E -i "1{/^#\!\s*\/usr\/bin/d}" \
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pycbc/results/*.py
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%build
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%python3_build
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%python_build
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%install
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%python3_install
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%python_install
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sed -E -i "1 s|^#\!\s*/usr/bin/env\s*bash|#\!/bin/bash|" %{buildroot}%{_bindir}/run_pycbc_inference
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chmod -x %{buildroot}%{python3_sitearch}/pycbc/results/static/js/fancybox/2.1.5/jquery.fancybox.js
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chmod -x %{buildroot}%{python3_sitearch}/pycbc/results/static/js/fancybox/2.1.5/jquery.fancybox.pack.js
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%python_expand chmod -x %{buildroot}%{$python_sitearch}/pycbc/results/static/js/fancybox/2.1.5/jquery.fancybox*.js
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%fdupes %{buildroot}%{python3_sitearch}
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%python_expand %fdupes %{buildroot}%{$python_sitearch}
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%if %{with tests}
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%check
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# Delete tests requiring network
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rm test/test_dq.py examples/workflow/data_checker/daily_test.py
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# Broken tests
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rm test/fft_base.py \
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test/test_array.py \
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# Tests that either require network or don't work due to unpackaged modules
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rm -fr \
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examples/workflow/data_checker/daily_test.py \
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test/test_calibration.py \
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test/test_chisq.py \
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test/test_fft_unthreaded.py \
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test/test_fftw_openmp.py \
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test/test_fftw_pthreads.py \
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test/test_distributions.py \
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test/test_dq.py \
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test/test_fft*.py \
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test/test_frame.py \
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test/test_frequencyseries.py \
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test/test_schemes.py \
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test/test_skymax.py \
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test/test_timeseries.py
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pushd test
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export PYTHONPATH=%{buildroot}%{python3_sitearch}
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test/test_infmodel.py
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%{python_expand pushd test # for tests
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export PYTHONPATH=%{buildroot}%{$python_sitearch}
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export PYTHONDONTWRITEBYTECODE=1
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python3 -m unittest
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pytest-%{$python_version}
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popd
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}
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%endif
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%files -n python3-%{modname}
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%files -n %{modname}-utils
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%{_bindir}/*
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%{python3_sitearch}/pycbc/
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%{python3_sitearch}/%{modname}-%{version}-py%{python3_version}.egg-info/
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%files %{python_files}
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%{python_sitearch}/pycbc/
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%{python_sitearch}/%{modname}-%{version}-py%{python_version}.egg-info/
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%changelog
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