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311674b1111ae4a505884aeecf1664c60d6ed4c41ecfc83bc9cc4c2a85850d1f
python-astropy/python-astropy.spec
Tomáš Chvátal 311674b111 Accepting request 840965 from home:bnavigator:branches:devel:languages:python:numeric 
- Update to 4.0.2
  New Features
  * astropy.utils
    astropy.utils.data.download_file now supports FTPS/FTP over 
    TLS. [#9964]
    astropy.utils.data now uses a lock-free mechanism for caching. 
    This new mechanism uses a new cache layout and so ignores 
    caches created using earlier mechanisms (which were causing 
    lockups on clusters). The two cache formats can coexist but do 
    not share any files. [#10437, #10683]
    astropy.utils.data now ignores the config item 
    astropy.utils.data.conf.download_cache_lock_attempts since no 
    locking is done. [#10437, #10683]
    astropy.utils.data.download_file and related functions now 
    interpret the parameter or config file setting timeout=0 to 
    mean they should make no attempt to download files. [#10437, 
    #10683]
    astropy.utils.import_file_to_cache now accepts a keyword-only 
    argument replace, defaulting to True, to determine whether it 
    should replace existing files in the cache, in a way as close 
    to atomic as possible. [#10437, #10683]
    astropy.utils.data.download_file and related functions now 
    treat http://example.com and http://example.com/ as equivalent. 
    [#10631]
  * astropy.wcs
    The new auxiliary WCS parameters added in WCSLIB 7.1 are now 
    exposed as the aux attribute of Wcsprm. [#10333]
    Updated bundled version of WCSLIB to v7.3. [#10433]
  Bug fixes
  * astropy.config
    Added an extra fallback to os.expanduser('~') when trying to 
    find the user home directory. [#10570]
  * astropy.constants
    Corrected definition of parsec to 648 000 / pi AU following IAU 
    2015 B2 [#10569]
  * astropy.convolution
    Fixed a bug where a float-typed integers in the argument 
    x_range of astropy.convolution.utils.discretize_oversample_1D 
    (and the 2D version as well) fails because it uses 
    numpy.linspace, which requires an int. [#10696]
  * astropy.coordinates
    Ensure that for size-1 array SkyCoord and coordinate frames the 
    attributes also properly become scalars when indexed with 0. 
    [#10113]
    Fixed a bug where SkyCoord.separation() and 
    SkyCoord.separation_3d were not accepting a frame object. 
    [#10332]
    Ensure that the lon values in SkyOffsetFrame are wrapped 
    correctly at 180 degree regardless of how the underlying data 
    is represented. [#10163]
    Fixed an error in the obliquity of the ecliptic when 
    transforming to/from the *TrueEcliptic coordinate frames. The 
    error would primarily result in an inaccuracy in the ecliptic 
    latitude on the order of arcseconds. [#10129]
    Fixed an error in the computation of the location of solar 
    system bodies where the Earth location of the observer was 
    ignored during the correction for light travel time. [#10292]
    Ensure that coordinates with proper motion that are transformed 
    to other coordinate frames still can be represented properly. 
    [#10276]
    Improve the error message given when trying to get a cartesian 
    representation for coordinates that have both proper motion and 
    radial velocity, but no distance. [#10276]
    Fixed an error where SkyCoord.apply_space_motion would return 
    incorrect results when no distance is set and proper motion is 
    high. [#10296]
    Make the parsing of angles thread-safe so that Angle can be 
    used in Python multithreading. [#10556]
    Fixed reporting of EarthLocation.info which previously raised 
    an exception. [#10592]
  * astropy.io.ascii
    Fixed a bug with the C fast_reader not correctly parsing 
    newlines when delimiter was also set to \n or \r; ensured 
    consistent handling of input strings without newline 
    characters. [#9929]
  * astropy.io.fits
    Fix integer formats of TFORMn=Iw columns in ASCII tables to 
    correctly read values exceeding int32 - setting int16, int32 or 
    int64 according to w. [#9901]
    Fix unclosed memory-mapped FITS files in FITSDiff when 
    difference found. [#10159]
    Fix crash when reading an invalid table file. [#10171]
    Fix duplication issue when setting a keyword ending with space. 
    [#10482]
    Fix ResourceWarning with fits.writeto and pathlib.Path object. 
    [#10599]
    Fix repr for commentary cards and strip spaces for commentary 
    keywords. [#10640]
    Fix compilation of cfitsio with Xcode 12. [#10772]
    Fix handling of 1-dimensional arrays with a single element in 
    BinTableHDU [#10768]
  * astropy.io.misc
    Fix id URL in baseframe-1.0.0 ASDF schema. [#10223]
    Write keys to ASDF only if the value is present, to account for 
    a change in behavior in asdf 2.8. [#10674]
  * astropy.io.registry
    Fix Table.(read|write).help when reader or writer has no 
    docstring. [#10460]
  * astropy.io.votable
    Fixed parsing failure of VOTable with no fields. When detecting 
    a non-empty table with no fields, the following warning/
    exception is issued: E25 "No FIELDs are defined; DATA section 
    will be ignored." [#10192]
  * astropy.modeling
    Fixed a problem with mapping input_units and return_units of a 
    CompoundModel to the units of the constituent models. [#10158]
    Removed hard-coded names of inputs and outputs. [#10174]
    Fixed a problem where slicing a CompoundModel by name will 
    crash if there fix_inputs operators are present. [#10224]
    Removed a limitation of fitting of data with units with 
    compound models without units when the expression involves 
    operators other than addition and subtraction. [#10415]
    Fixed a problem with fitting Linear1D and Planar2D in model 
    sets. [#10623]
    Fixed reported module name of math_functions model classes. 
    [#10694]
    Fixed reported module name of tabular model classes. [#10709]
    Do not create new math_functions models for ufuncs that are 
    only aliases (divide and mod). [#10697]
    Fix calculation of the Moffat2D derivative with respect to 
    gamma. [#10784]
  * astropy.stats
    Fixed an API regression where SigmaClip.__call__ would convert 
    masked elements to nan and upcast the dtype to float64 in its 
    output MaskedArray when using the axis parameter along with the 
    defaults masked=True and copy=True. [#10610]
    Fixed an issue where fully masked MaskedArray input to 
    sigma_clipped_stats gave incorrect results. [#10099]
    Fixed an issue where sigma_clip and SigmaClip.__call__ would 
    return a masked array instead of a ndarray when masked=False 
    and the input was a full-masked MaskedArray. [#10099]
    Fixed bug with funcs.poisson_conf_interval where an integer for 
    N with interval='kraft-burrows-nousek' would throw an error 
    with mpmath backend. [#10427]
    Fixed bug in funcs.poisson_conf_interval with interval='kraft-
    burrows-nousek' where certain combinations of source and 
    background count numbers led to ValueError due to the choice of 
    starting value for numerical optimization. [#10618]
  * astropy.table
    Fixed a bug when writing a table with mixin columns to FITS, 
    ECSV or HDF5. If one of the data attributes of the mixin (e.g. 
    skycoord.ra) had the same name as one of the table column names 
    (ra), the column (ra) would be dropped when reading the table 
    back. [#10222]
    Fixed a bug when sorting an indexed table on the indexed column 
    after first sorting on another column. [#10103]
    Fixed a bug in table argsort when called with reverse=True for 
    an indexed table. [#10103]
    Fixed a performance regression introduced in #9048 when 
    initializing a table from Python lists. Also fixed incorrect 
    behavior (for data types other than float) when those lists 
    contain np.ma.masked elements to indicate masked data. [#10636]
    Avoid modifying .meta when serializing columns to FITS. 
    [#10485]
    Avoid crash when reading a FITS table that contains mixin info 
    and PyYAML is missing. [#10485]
  * astropy.time
    Ensure that for size-1 array Time, the location also properly 
    becomes a scalar when indexed with 0. [#10113]
  * astropy.units
    Refined test_parallax to resolve difference between 2012 and 
    2015 definitions. [#10569]
  * astropy.utils
    The default IERS server has been updated to use the FTPS server 
    hosted by CDDIS. [#9964]
    Fixed memory allocation on 64-bit systems within xml.iterparse 
    [#10076]
    Fix case where None could be used in a numerical computation. 
    [#10126]
  * astropy.visualization
    Fixed a bug where the ImageNormalize clip keyword was ignored 
    when used with calling the object on data. [#10098]
    Fixed a bug where axes.xlabel/axes.ylabel where not correctly 
    set nor returned on an EllipticalFrame class WCSAxes plot.
    [#10446]
  * astropy.wcs
    Handled WCS 360 -> 0 deg crossover in fit_wcs_from_points 
    [#10155]
    Do not issue DATREF warning when MJDREF has default value. 
    [#10440]
    Fixed a bug due to which naxis argument was ignored if header 
    was supplied during the initialization of a WCS object. 
    [#10532]
  Other Changes and Additions
  * Improved the speed of sorting a large Table on a single column 
    by a factor of around 5. [#10103]
  * Ensure that astropy can be used inside Application bundles 
    built with pyinstaller. [#8795]
  * Updated the bundled CFITSIO library to 3.49. See cextern/
    cfitsio/docs/changes.txt for additional information. [#10256, 
    #10665]
  * extract_array raises a ValueError if the data type of the input 
    array is inconsistent with the fill_value. [#10602]
- Drop merged PR patches
  * astropy-pr10433-wcslib73-tests.patch gh#astropy/astropy#10433
  * astropy-pr10440-wcs-datfix.patch gh#astropy/astropy#10440
- Skip test_compound_fitting_with_units gh#astropy/astropy#10675

OBS-URL: https://build.opensuse.org/request/show/840965
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=34
2020-10-11 10:33:44 +00:00

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#
# spec file for package python-astropy
#
# Copyright (c) 2020 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
%global flavor @BUILD_FLAVOR@%{nil}
%if "%{flavor}" == "test"
%define psuffix -test
%bcond_without test
%else
%define psuffix %{nil}
%bcond_with test
%endif
%define binaries fitsdiff fitsheader fitscheck fitsinfo fits2bitmap samp_hub showtable volint wcslint
%define skip_python2 1
Name: python-astropy
Version: 4.0.2
Release: 0
Summary: Community-developed python astronomy tools
License: BSD-3-Clause
URL: https://astropy.org
Source: https://files.pythonhosted.org/packages/source/a/astropy/astropy-%{version}.tar.gz
# PATCH-FIX-UPSTREAM astropy-pr10545-remove-newline-3d_cd_hdr.patch gh#astropy/astropy#10545 -- clean up newlines after pytest output
Patch0: astropy-pr10545-remove-newline-3d_cd_hdr.patch
# Mark wcs headers as false positives for devel-file-in-non-devel-package
# These are used by the python files so they must be available.
Source100: python-astropy-rpmlintrc
BuildRequires: %{python_module Cython >= 0.21}
BuildRequires: %{python_module astropy-helpers}
BuildRequires: %{python_module devel}
BuildRequires: %{python_module numpy-devel >= 1.16}
BuildRequires: %{python_module ply}
BuildRequires: %{python_module setuptools}
BuildRequires: fdupes
BuildRequires: hdf5-devel
BuildRequires: libxml2-tools
BuildRequires: pkgconfig
BuildRequires: python-rpm-macros
BuildRequires: pkgconfig(cfitsio)
BuildRequires: pkgconfig(erfa) >= 1.7.0
BuildRequires: pkgconfig(expat)
BuildRequires: pkgconfig(wcslib)
Requires: hdf5
Requires: liberfa1 >= 1.7.0
Requires: python-dbm
Requires: python-matplotlib >= 2.1
Requires: python-numpy >= 1.7.0
Requires(post): update-alternatives
Requires(postun): update-alternatives
Recommends: libxml2-tools
Recommends: python-Bottleneck
Recommends: python-Jinja2
Recommends: python-PyYAML
Recommends: python-asdf >= 2.5
Recommends: python-beautifulsoup4
Recommends: python-bleach
Recommends: python-h5py
Recommends: python-ipython
Recommends: python-jplephem
Recommends: python-matplotlib >= 2.1
Recommends: python-pandas
Recommends: python-scikit-image
Recommends: python-scipy >= 0.18
Conflicts: perl-Data-ShowTable
%if %{with test}
# SECTION Optional requirements
BuildRequires: %{python_module Bottleneck}
BuildRequires: %{python_module Jinja2}
BuildRequires: %{python_module PyYAML}
BuildRequires: %{python_module asdf >= 2.5}
BuildRequires: %{python_module beautifulsoup4}
BuildRequires: %{python_module bleach}
BuildRequires: %{python_module h5py}
BuildRequires: %{python_module ipython}
BuildRequires: %{python_module jplephem}
BuildRequires: %{python_module matplotlib >= 2.1}
BuildRequires: %{python_module pandas}
BuildRequires: %{python_module scikit-image}
BuildRequires: %{python_module scipy >= 0.18}
# /SECTION
# SECTION test requirements
BuildRequires: %{python_module astropy = %{version}}
BuildRequires: %{python_module mpmath}
BuildRequires: %{python_module objgraph}
BuildRequires: %{python_module pytest >= 3.1}
BuildRequires: %{python_module pytest-astropy}
BuildRequires: %{python_module pytest-doctestplus >= 0.6}
BuildRequires: %{python_module pytest-mpl}
# /SECTION
%endif
%python_subpackages
%description
Astropy is a package intended to contain core functionality and some
common tools needed for performing astronomy and astrophysics research with
Python. It also provides an index for other astronomy packages and tools for
managing them.
%if !%{with test}
%prep
%setup -q -n astropy-%{version}
%autopatch -p1
# Disable test failure on DeprecationWarnings
sed -i "/enable_deprecations_as_exceptions(/,/)/ d" astropy/conftest.py
# Make sure bundled libs are not used
rm -rf cextern/expat
rm -rf cextern/erfa
rm -rf cextern/cfitsio
rm -rf cextern/wcslib
echo "[build]" >> setup.cfg
echo "use_system_libraries=1" >> setup.cfg
%build
%python_build --use-system-libraries --offline
%install
%python_install --use-system-libraries --offline
for b in %{binaries}; do
%python_clone -a %{buildroot}%{_bindir}/$b
done
chmod a-x %{buildroot}%{python_sitearch}/astropy/wcs/tests/data/header_with_time.fits
# Deduplicating files can generate a RPMLINT warning for pyc mtime
%{python_expand %fdupes %{buildroot}%{$python_sitearch}
rm -rf %{buildroot}%{$python_sitearch}/astropy/io/misc/tests/__pycache__/__init__.*.pyc
rm -rf %{buildroot}%{$python_sitearch}/astropy/io/votable/tests/__pycache__/*_test.*.pyc
rm -rf %{buildroot}%{$python_sitearch}/astropy/io/votable/tests/__pycache__/__init__.*.pyc
rm -rf %{buildroot}%{$python_sitearch}/astropy/wcs/tests/__pycache__/__init__.*.pyc
rm -rf %{buildroot}%{$python_sitearch}/astropy/wcs/tests/extension/__pycache__/__init__.*.pyc
$python -m compileall -d %{$python_sitearch} %{buildroot}%{$python_sitearch}/astropy/io/misc/tests/
$python -O -m compileall -d %{$python_sitearch} %{buildroot}%{$python_sitearch}/astropy/io/misc/tests/
$python -m compileall -d %{$python_sitearch} %{buildroot}%{$python_sitearch}/astropy/io/votable/tests/
$python -O -m compileall -d %{$python_sitearch} %{buildroot}%{$python_sitearch}/astropy/io/votable/tests/
$python -m compileall -d %{$python_sitearch} %{buildroot}%{$python_sitearch}/astropy/stats/bls/tests/
$python -O -m compileall -d %{$python_sitearch} %{buildroot}%{$python_sitearch}/astropy/stats/bls/tests/
$python -m compileall -d %{$python_sitearch} %{buildroot}%{$python_sitearch}/astropy/wcs/tests/
$python -O -m compileall -d %{$python_sitearch} %{buildroot}%{$python_sitearch}/astropy/wcs/tests/
%fdupes %{buildroot}%{$python_sitearch}
}
%endif
%if %{with test}
%check
# test matrix is ill-conditioned and fails occasionally
# https://github.com/astropy/astropy/issues/10675
donttest="compound_fitting_with_units"
%ifarch aarch64
# doctest failure because of precision errors
donttest+=" or bayesian_info_criterion_lsq"
%endif
# http://docs.astropy.org/en/latest/development/testguide.html#running-tests
# running pytest directly would require building the extensions inplace
%python_exec -B -c "import astropy, sys; sys.exit(astropy.test(args=\"-v -k \\\"not ($donttest)\\\"\"))"
%endif
%if !%{with test}
%post
%{expand:%(for b in %{binaries}; do echo "%%python_install_alternative $b"; done)}
%postun
%{expand:%(for b in %{binaries}; do echo "%%python_uninstall_alternative $b"; done)}
%files %{python_files}
%doc CHANGES.rst README.rst
%license licenses/*
%{expand:%(for b in %{binaries}; do echo "%%python_alternative %%{_bindir}/$b"; done)}
%{python_sitearch}/astropy/
%{python_sitearch}/astropy-%{version}-py*.egg-info
%endif
%changelog
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