84 lines
2.6 KiB
RPMSpec
84 lines
2.6 KiB
RPMSpec
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#
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# spec file for package python-biopython
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#
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# Copyright (c) 2024 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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# Tests require a network connection
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%bcond_with test
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%{?sle15_python_module_pythons}
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Name: python-biopython
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Version: 1.84
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Release: 0
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Summary: Python Tools for Computational Molecular Biology
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License: BSD-3-Clause AND MIT
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URL: https://biopython.org/
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Source0: https://files.pythonhosted.org/packages/source/b/biopython/biopython-%{version}.tar.gz
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Source100: python-biopython-rpmlintrc
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Patch1: https://github.com/biopython/biopython/commit/22ebf951e736bd44f04e3552a4a39723ccb3c219.patch#/py313-support.patch
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BuildRequires: %{python_module devel}
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BuildRequires: %{python_module numpy-devel}
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BuildRequires: %{python_module setuptools}
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BuildRequires: %{python_module xml}
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BuildRequires: fdupes
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BuildRequires: flex
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BuildRequires: python-rpm-macros
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Requires: python-numpy
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Requires: python-xml
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Recommends: python-matplotlib
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Recommends: python-mysql
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Recommends: python-networkx
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Recommends: python-psycopg2
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Recommends: python-pydot
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Recommends: python-pygraphviz
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Recommends: python-rdflib
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Recommends: python-reportlab
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%python_subpackages
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%description
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The Biopython Project is an international association of developers of freely
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available Python tools for computational molecular biology.
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%prep
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%autosetup -p1 -n biopython-%{version}
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find -type f -name "*.py" -exec sed -i '/^#![ ]*\/usr\/bin\/.*$/ d' {} 2>/dev/null ';'
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# Example scripts cannot be in a subdirectory
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mv -v Doc/examples examples
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%build
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export LANG=en_US.UTF-8
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%python_build
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%install
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export LANG=en_US.UTF-8
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%python_install
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%python_expand %fdupes %{buildroot}%{$python_sitearch}
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%if %{with test}
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%check
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export LANG=en_US.UTF-8
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%pytest
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%endif
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%files %{python_files}
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%doc CONTRIB.rst DEPRECATED.rst NEWS.rst README.rst
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%doc Doc/ examples/
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%license LICENSE.rst
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%{python_sitearch}/Bio/
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%{python_sitearch}/BioSQL/
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%{python_sitearch}/biopython-%{version}-py*.egg-info
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%changelog
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