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- update to 1.84:

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* The old parser stores information in a
    Bio.Blast.NCBIXML.Blast object, with attribute names based on
    plain-text Blast output. The new parser stores information in
    a Bio.Blast.Record object. This class follows the DTD that
    describes the XML in terms of attribute names and dictionary
    key names, class structure, and object types. This makes it
    easier to find the detailed description of each field in the
    NCBI Blast documentation.
  * The old parser stores alignment information directly as seen
    in the BLAST XML output, i.e. as strings with dashes to
    represent gaps. The new parser stores the alignment
    information as a Bio.Align.Alignment object, which can then
    be used to e.g. print the alignment in a different format.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-biopython?expand=0&rev=25
This commit is contained in:
Dirk Mueller
2024-10-10 15:36:57 +00:00
committed by Git OBS Bridge
parent f59a2df26c
commit 7cea57e53a
4 changed files with 22 additions and 4 deletions
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python-biopython.changes
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@@ -1,3 +1,21 @@
-------------------------------------------------------------------
Thu Oct 10 15:36:36 UTC 2024 - Dirk Müller <dmueller@suse.com>
- update to 1.84:
* The old parser stores information in a
Bio.Blast.NCBIXML.Blast object, with attribute names based on
plain-text Blast output. The new parser stores information in
a Bio.Blast.Record object. This class follows the DTD that
describes the XML in terms of attribute names and dictionary
key names, class structure, and object types. This makes it
easier to find the detailed description of each field in the
NCBI Blast documentation.
* The old parser stores alignment information directly as seen
in the BLAST XML output, i.e. as strings with dashes to
represent gaps. The new parser stores the alignment
information as a Bio.Align.Alignment object, which can then
be used to e.g. print the alignment in a different format.
-------------------------------------------------------------------
Sat Jan 20 12:29:01 UTC 2024 - Dirk Müller <dmueller@suse.com>