pool/python-biopython
SHA256
17
0
Fork 1
Code Issues Pull Requests Activity

Accepting request 874100 from home:andythe_great:branches:devel:languages:python:numeric

Browse Source 
- Update to version 1.7.8.
  * The main change is that Bio.Alphabet is no longer used. In some
    cases you will now have to specify expected letters, molecule 
    type (DNA, RNA, protein), or gap character explicitly.
  * Bio.SeqIO.parse() is faster with "fastq" format due to small 
    improvements in the Bio.SeqIO.QualityIO module.
  * The SeqFeature object's .extract() method can now be used for 
    trans-spliced locations via an optional dictionary of references.
  * As in recent releases, more of our code is now explicitly 
    available under either our original "Biopython License Agreement",
    or the very similar but more commonly used "3-Clause BSD License".
    See the LICENSE.rst file for more details.
  * Additionally, a number of small bugs and typos have been fixed
    with additions to the test suite. There has been further work to
    follow the Python PEP8, PEP257 and best practice standard coding
    style, and all of the tests have been reformatted with the black
    tool to match the main code base.
- Skip python36 because numpy no longer support it.

OBS-URL: https://build.opensuse.org/request/show/874100
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-biopython?expand=0&rev=13
This commit is contained in:
Matej Cepl
2021-02-21 06:56:38 +00:00
committed by Git OBS Bridge
parent 2c3914af7b
commit e57a808125
4 changed files with 28 additions and 6 deletions
Download Patch File Download Diff File Expand all files Collapse all files

22
python-biopython.changes
View File

@@ -1,3 +1,25 @@
-------------------------------------------------------------------
Sat Feb 20 19:29:23 UTC 2021 - andy great <andythe_great@pm.me>
- Update to version 1.7.8.
* The main change is that Bio.Alphabet is no longer used. In some
cases you will now have to specify expected letters, molecule
type (DNA, RNA, protein), or gap character explicitly.
* Bio.SeqIO.parse() is faster with "fastq" format due to small
improvements in the Bio.SeqIO.QualityIO module.
* The SeqFeature object's .extract() method can now be used for
trans-spliced locations via an optional dictionary of references.
* As in recent releases, more of our code is now explicitly
available under either our original "Biopython License Agreement",
or the very similar but more commonly used "3-Clause BSD License".
See the LICENSE.rst file for more details.
* Additionally, a number of small bugs and typos have been fixed
with additions to the test suite. There has been further work to
follow the Python PEP8, PEP257 and best practice standard coding
style, and all of the tests have been reformatted with the black
tool to match the main code base.
- Skip python36 because numpy no longer support it.
-------------------------------------------------------------------
Tue Nov 3 15:58:16 UTC 2020 - Matej Cepl <mcepl@suse.com>