Benjamin Greiner
a27ed9e1fa
## New features
* h5py.Dataset.iter_chunks() accepts slice objects with the None
value for slice.start and slice.stop attributes, or integers
(PR 2657). Example: dset.iter_chunks((slice(None, None), 4)).
This is equivalent to dset[:,4].
* A new track_times parameter when creating a group or a file to
control whether creation, modification, change and access
timestamps are stored for group objects (PR 2611). This is
False by default.
* Work to better support free-threaded mode in CPython (PR 2658,
PR 2678). This is not substantially tested yet, but some of the
most glaring issues have been resolved. See free-threading.
## Breaking Changes and Deprecations
* Support for Python 3.9 was dropped. Python 3.10 or newer is now
required to build or install h5py from this version on (PR
2640).
* The minimum supported version of HDF5 is now 1.10.7, and within
the 1.12 series the minimum supported version is now 1.12.1 (PR
2605).
* Timestamps are no longer stored by default for groups
(including the root group) if the track_order parameter is set
(PR 2611). Previously, setting this parameter also caused
timestamps to be stored in the file.
## Bug fixes
* Fixed h5py.h5p.PropLAID.get_elink_prefix method (PR 2712).
* Fixed a segfault reading unallocated variable length string
data as NumPy variable length strings (PR 2630).
* Fixed an error reading certain types of variable length data
where an entry has 0 length (PR 2717).
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-h5py?expand=0&rev=62
144 lines
4.8 KiB
RPMSpec
144 lines
4.8 KiB
RPMSpec
#
|
|
# spec file for package python-h5py
|
|
#
|
|
# Copyright (c) 2025 SUSE LLC and contributors
|
|
#
|
|
# All modifications and additions to the file contributed by third parties
|
|
# remain the property of their copyright owners, unless otherwise agreed
|
|
# upon. The license for this file, and modifications and additions to the
|
|
# file, is the same license as for the pristine package itself (unless the
|
|
# license for the pristine package is not an Open Source License, in which
|
|
# case the license is the MIT License). An "Open Source License" is a
|
|
# license that conforms to the Open Source Definition (Version 1.9)
|
|
# published by the Open Source Initiative.
|
|
|
|
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
|
#
|
|
|
|
|
|
%global flavor @BUILD_FLAVOR@%{nil}
|
|
%define pname python-h5py
|
|
# SECTION MPI DEFINITIONS
|
|
%if "%{flavor}" == "openmpi4"
|
|
%global mpi_flavor openmpi
|
|
%define mpi_vers 4
|
|
%endif
|
|
%if "%{flavor}" == "openmpi5"
|
|
%global mpi_flavor openmpi
|
|
%define mpi_vers 5
|
|
%endif
|
|
|
|
%{?mpi_flavor:%{bcond_without mpi}}%{!?mpi_flavor:%{bcond_with mpi}}
|
|
%{?with_mpi:%{!?mpi_flavor:error "No MPI family specified!"}}
|
|
|
|
%if %{with mpi}
|
|
%define my_prefix %{_libdir}/mpi/gcc/%{mpi_flavor}%{?mpi_vers}
|
|
%define my_bindir %{my_prefix}/bin
|
|
%define my_libdir %{my_prefix}/%{_lib}
|
|
%define my_incdir %{my_prefix}/include
|
|
%define my_suffix -%{mpi_flavor}%{?mpi_vers}
|
|
%define my_sitearch_in_expand %{my_libdir}/python%{$python_version}/site-packages
|
|
%else
|
|
%define my_prefix %{_prefix}
|
|
%define my_bindir %{_bindir}
|
|
%define my_libdir %{_libdir}
|
|
%define my_incdir %{_includedir}
|
|
%define my_datadir %{_datadir}
|
|
%define my_sitearch_in_expand %{$python_sitearch}
|
|
%endif
|
|
# /SECTION MPI DEFINITIONS
|
|
Name: %{pname}%{?my_suffix}
|
|
Version: 3.15.1
|
|
Release: 0
|
|
Summary: Python interface to the Hierarchical Data Format library
|
|
License: BSD-3-Clause
|
|
Group: Development/Libraries/Python
|
|
URL: https://github.com/h5py/h5py
|
|
Source: https://files.pythonhosted.org/packages/source/h/h5py/h5py-%{version}.tar.gz
|
|
BuildRequires: %{python_module Cython >= 3 with %python-Cython < 4}
|
|
BuildRequires: %{python_module devel >= 3.10}
|
|
BuildRequires: %{python_module numpy-devel >= 2.0.0}
|
|
BuildRequires: %{python_module pip}
|
|
BuildRequires: %{python_module pkgconfig >= 1.5.5}
|
|
BuildRequires: %{python_module pytest >= 8.2.2}
|
|
BuildRequires: %{python_module setuptools >= 77.0.1}
|
|
BuildRequires: %{python_module wheel}
|
|
BuildRequires: fdupes
|
|
BuildRequires: hdf5%{?my_suffix}-devel >= 1.11.5
|
|
BuildRequires: python-rpm-macros
|
|
# Work around requires_eq not finding the capability libhdf5. Need the Requires before the macro for the python subpackage rewriter
|
|
Requires: %(rpm -q --requires hdf5%{?my_suffix}-devel | grep 'libhdf5.* = ' | head -n 1)
|
|
Requires: python-numpy >= 1.21.2
|
|
%if %{with mpi}
|
|
BuildRequires: %{mpi_flavor}%{mpi_vers}-devel
|
|
BuildRequires: %{python_module mpi4py >= 3.1.2}
|
|
BuildRequires: %{python_module pytest-mpi >= 0.6}
|
|
Requires: python-mpi4py >= 3.1.2
|
|
%endif
|
|
%python_subpackages
|
|
|
|
%description
|
|
H5py provides a simple, robust read/write interface to HDF5 data from Python.
|
|
Existing Python and Numpy concepts are used for the interface; for example,
|
|
datasets on disk are represented by a proxy class that supports slicing, and
|
|
has dtype and shape attributes. HDF5 groups are presented using a dictionary
|
|
metaphor, indexed by name.
|
|
|
|
%prep
|
|
%autosetup -p1 -n h5py-%{version}
|
|
|
|
%build
|
|
%if %{with mpi}
|
|
source %{my_bindir}/mpivars.sh
|
|
export CC=mpicc
|
|
export HDF5_MPI="ON"
|
|
export HDF5_LIBDIR=%{my_libdir}
|
|
export HDF5_INCLUDEDIR=%{my_incdir}
|
|
%endif
|
|
export CFLAGS="%{optflags} -fno-strict-aliasing"
|
|
%pyproject_wheel
|
|
|
|
%install
|
|
%if %{with mpi}
|
|
%pyproject_install --prefix %{my_prefix}
|
|
%else
|
|
%pyproject_install
|
|
%endif
|
|
%python_expand %fdupes %{buildroot}%{my_sitearch_in_expand}/h5py/
|
|
|
|
%check
|
|
donttest="dummytest"
|
|
%ifarch %{ix86} %{arm}
|
|
# overflow
|
|
donttest="test_float_round_tripping or test_register_filter"
|
|
%endif
|
|
# Disable test for ppc64le because of Insufficient precision
|
|
%ifarch ppc64le
|
|
donttest+=" or test_complex256 or test_long_double or test_custom_float_promotion"
|
|
%endif
|
|
%{python_expand #
|
|
%if %{with mpi}
|
|
source %{my_bindir}/mpivars.sh
|
|
%endif
|
|
export LD_LIBRARY_PATH=%{my_libdir}
|
|
export PYTHONPATH=%{buildroot}%{my_sitearch_in_expand}
|
|
export PYTHONDONTWRITEBYTECODE=1
|
|
pytest-%{$python_bin_suffix} %{buildroot}%{my_sitearch_in_expand}/h5py/ \
|
|
%{?with_mpi:-k "not ($donttest)" -m 'not mpi_skip'}%{!?with_mpi:-k "not (TestMPI or $donttest)"}
|
|
}
|
|
|
|
%files %{python_files}
|
|
%license lzf/LICENSE.txt
|
|
%doc README.rst lzf/README.txt examples licenses/*
|
|
%if %{with mpi}
|
|
%dir %{my_libdir}/python%{python_version}
|
|
%dir %{my_libdir}/python%{python_version}/site-packages
|
|
%{my_libdir}/python%{python_version}/site-packages/h5py
|
|
%{my_libdir}/python%{python_version}/site-packages/h5py-%{version}*-info
|
|
%else
|
|
%{python_sitearch}/h5py/
|
|
%{python_sitearch}/h5py-%{version}*-info
|
|
%endif
|
|
|
|
%changelog
|