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- update to 2.30.1: * Ci: add 3.13 wheels * Fix: root version in docs * Allow to modify slider range in interactive widget * Fix: add readout_format to slider * Show correct ROOT version in documentation * Fix odr issue in type_caster which could result in ub when -flto is enabled * Remove packaging dependency * Restore cython tutorial * Support sum(w) < 0 in binned fits * Set pybind11_findpython on to use findpython cmake mode * Fix version parse * Improve maintainer metadata * Iteration limit in smart sampling to fix behavior for step functions * Support interval type and check compatibility with pydantic - renenable build for python311 (numba available) - Do not build for Python 3.6, due to no NumPy. OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-iminuit?expand=0&rev=67
2024-11-13 15:16:58 +00:00
-------------------------------------------------------------------
Wed Nov 13 15:16:48 UTC 2024 - Dirk Müller <dmueller@suse.com>
- update to 2.30.1:
* Ci: add 3.13 wheels
* Fix: root version in docs
* Allow to modify slider range in interactive widget
* Fix: add readout_format to slider
* Show correct ROOT version in documentation
* Fix odr issue in type_caster which could result in ub when
-flto is enabled
* Remove packaging dependency
* Restore cython tutorial
* Support sum(w) < 0 in binned fits
* Set pybind11_findpython on to use findpython cmake mode
* Fix version parse
* Improve maintainer metadata
-------------------------------------------------------------------
Mon Sep 23 19:25:45 UTC 2024 - Ben Greiner <code@bnavigator.de>
- Fix numba/numpy resolve blocker in obs: Test in multibuild
* -test: no numba, numpy >= 2.1
* -test-numba: numpy < 2.1 for numba 0.60
* Remove entry_points empty file workaround: fixed in toolchain
-------------------------------------------------------------------
Fri Aug 2 08:58:44 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.28.0:
* drop support for python-3.8 (gh#scikit-hep/iminuit#1015).
* Fix LeastSquares for functions with more than two arguments
(gh#scikit-hep/iminuit#1016).
* Add name argument to all cost functions
(gh#scikit-hep/iminuit#1017).
- Bump minimum required python-devel to 3.9.
-------------------------------------------------------------------
Fri Mar 15 19:54:51 UTC 2024 - Ben Greiner <code@bnavigator.de>
- Skip testing with ipywidgets on python39: no longer supported
since ipython 8.19
- Clean dependencies
- Drop rpmlintrc
-------------------------------------------------------------------
Tue Feb 20 10:43:12 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.25.2:
* update to latest root (gh#scikit-hep/iminuit#970).
- Changes from version 2.25.1:
* improve docs for make_with_signature
(gh#scikit-hep/iminuit#963).
* Update benchmark to ROOT-6.30 (gh#scikit-hep/iminuit#967).
* fix LeastSquares.visualize for models that accept parameter
array (gh#scikit-hep/iminuit#968).
- Changes from version 2.25.0:
* Some updates to the Ruff config (gh#scikit-hep/iminuit#933).
* Add extra config to pytest (gh#scikit-hep/iminuit#932).
* Cost gradient support (gh#scikit-hep/iminuit#936).
* Warn on errordef override (gh#scikit-hep/iminuit#937).
* fix: include debug info on failures
(gh#scikit-hep/iminuit#946).
* Benchmark update to ROOT 6.30 (gh#scikit-hep/iminuit#951).
* Fix use of removed array rules in test
(gh#scikit-hep/iminuit#952).
* Fix docstring parsing (gh#scikit-hep/iminuit#953).
* fix test that requires scipy and raise error on invalid value
for use_pdf (gh#scikit-hep/iminuit#962).
* Approximate CDF from PDF (gh#scikit-hep/iminuit#950).
- Do not disable any tests, fixed upstream.
-------------------------------------------------------------------
Thu Sep 7 08:27:08 UTC 2023 - Markéta Machová <mmachova@suse.com>
- Update to 2.24.0
* Fix CostSum.visualize bug
* Fix _safe_log on systems which use 32 bit floats
* Iteration limit in smart sampling to fix behavior for step functions
* Clarify meaning of 2d contours in minuit.draw_mnmatrix
* Support interval type and check compatibility with pydantic
-------------------------------------------------------------------
Fri Jun 30 18:24:19 UTC 2023 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.22.0:
* add basic latex display support if unicodeit is installed
[gh#scikit-help/iminuit#858].
* replace flake8 with ruff [gh#scikit-help/iminuit#859].
* Integer as variable [gh#scikit-help/iminuit#860].
* experimental mncontour algorithm [gh#scikit-help/iminuit#861].
* improve error message for cost function
[gh#scikit-help/iminuit#863].
* Add RooFit tutorial [gh#scikit-help/iminuit#867].
* Use unicodeitplus instead of unicodeit to render LaTeX as
unicode [gh#scikit-help/iminuit#868].
* Better ruff settings and adjustments, improvements to README
[gh#scikit-help/iminuit#871].
* Update Progressbar [gh#scikit-help/iminuit#872].
* Add hide_modules and deprecated_parameters
[gh#scikit-help/iminuit#873].
* Forward kwargs in Minuit.visualize to plotting function
[gh#scikit-help/iminuit#874].
* Ignore missing matplotlib when calling Minuit.repr_html()
[gh#scikit-help/iminuit#875].
* Rename keyword nbins to bins in UnbinnedCost.visualize
[gh#scikit-help/iminuit#876].
* Roofit tutorials [gh#scikit-help/iminuit#877].
* better log-spacing detection [gh#scikit-help/iminuit#878].
* Add LeastSquares.pulls and LeastSquares.prediction
[gh#scikit-help/iminuit#880].
* fix-typo-in-basic [gh#scikit-help/iminuit#888].
* Update fcn.hpp [gh#scikit-help/iminuit#889].
* Improve docs [gh#scikit-help/iminuit#890].
* Make covariance fields in display easier to understand
[gh#scikit-help/iminuit#891].
* New benchmarks [gh#scikit-help/iminuit#893].
* Add Minuit.fixto [gh#scikit-help/iminuit#894].
* fix: make nograd not use grad at all in automatic diff doc
[gh#scikit-help/iminuit#895].
* Use scikit-build-core [gh#scikit-help/iminuit#812].
* Update conclusions after the fix from Jonas
[gh#scikit-help/iminuit#899].
* Hide confusing notes in docs: "Not to be initialized by
users." [gh#scikit-help/iminuit#906].
- Drop missing-headers.patch: Incorporated upstream.
- Add BuildRequires: python-scikit-build-core > 0.3.0.
- Add %{name}.rpmlintc to suppress a false positive about a
missing python module (only required for python < 3.9).
-------------------------------------------------------------------
Tue Jun 20 14:15:27 UTC 2023 - Andreas Schwab <schwab@suse.de>
- missing-headers.patch: add missing headers
- Use the default compiler
- Build with %{optflags}
-------------------------------------------------------------------
Mon May 29 14:28:55 UTC 2023 - Dirk Müller <dmueller@suse.com>
- renenable build for python311 (numba available)
-------------------------------------------------------------------
Thu May 4 15:37:09 UTC 2023 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.21.3:
* Better docs for limits from annotated model parameters
(gh#scikit-hep/scikit-hep-testdata#853).
* Bump pypa/cibuildwheel from 2.12.0 to 2.12.1
(gh#scikit-hep/scikit-hep-testdata#855).
* fix template input modification bug in Template class
(gh#scikit-hep/scikit-hep-testdata#856).
-------------------------------------------------------------------
Fri Mar 24 14:45:33 UTC 2023 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.21.2:
* Fix CITATION.CFF.
- Changes from version 2.21.1:
* Fix string annotations (gh#scikit-hep/iminuit#849).
* Specifiy minimum required numpy version
(gh#scikit-hep/iminuit#848).
- Changes from version 2.21.0:
* Fix of matrix_format (gh#scikit-hep/iminuit#843).
* Support annotated model parameters
(gh#scikit-hep/iminuit#839).
* Visualize fit in minuit._repr_html_
(gh#scikit-hep/iminuit#838).
- Disable builds for python 3.11 as python311-numba is missing.
- Use GCC 12 for openSUSE >= 1550 as GCC 13 (now the default)
causes build failures.
- Update minimum version for (Build)Requires: python-numpy in
keeping with upstream.
- New BuildRequires: python-typing_extensions (for tests).
-------------------------------------------------------------------
Sat Jan 7 12:22:22 UTC 2023 - Dirk Müller <dmueller@suse.com>
- update to v2.18.0:
* Bump actions/checkout from 2 to 3
* ci: update to Python 3.11 final release
* move tutorials
* added visualize function to Minuit
* Bump pypa/cibuildwheel from 2.10.2 to 2.11.2
* add more checks for gradients
* Add Python 3.11, drop 3.6
-------------------------------------------------------------------
Wed Aug 17 21:43:27 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.16.0:
* Make FixedView act as mask for other views
[gh#scikit-hep/iminuit#781].
* Fix typing issues and enable mypy in pre-commit
[gh#scikit-hep/iminuit#783].
* Comparison with broadcast [gh#scikit-hep/iminuit#784].
* Fix corner case treatment of linear constraint
[gh#scikit-hep/iminuit#785].
* Root update [gh#scikit-hep/iminuit#786].
- Disable 'test_matrix' test in the check section for 32-bit as
the test fails for these archs due to a tolerance issue.
-------------------------------------------------------------------
Mon Jul 4 15:34:09 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.12.1:
* cost.BarlowBeestonLite: method “hpd” has been modified to fix
performance in cases where bins are not dominated by a single
template.
-------------------------------------------------------------------
Wed Jun 22 00:09:52 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.12.0:
* New
- New cost function cost.BarlowBeestonLite for template fits
with templates obtained from simulation or sWeighted data
- Formerly private chi2 utility cost functions
(cost.poisson_chi2, etc.), are now part of public API
- Support custom grid in Minuit.profile, iminuit.mncontour,
iminuit.contour
- Handle common CL values in Minuit.mnprofile and
Minuit.mncontour without scipy
* Fixes
- Skip tests that use np.float128 on platforms where this type
is not supported
- Minuit.valid now returns False if EDM is NaN
- subtract_min setting is no longer ignored by
Minuit.draw_contour
* Documentation: New study about template fits
* Minuit no longer warns when a function is used that has no
errordef attribute and Minuit.errordef is not explicitly set.
The function is assumed to be chi-square-like up to an
arbitrary constant, unless errordef is explicitly set to
something else.
* More type correctness in API, better hiding of private objects
in library
* Add option to use external pybind11
- Pass cmake option to build against external pybind11; add
BuildRequires: python-pybind11 and python-pybind11-devel and
remove bundled pybind11 from source dir.
-------------------------------------------------------------------
Sun May 1 19:11:29 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.11.2:
* Fixed wording in cost function tutorial
- Changes from version 2.11.1:
* Fixed a failure of util.make_with_signature in some
situations.
* Raise numpy.VisibleDeprecationWarning instead of
warnings.DeprecationWarning.
* util.propagate is deprecated in favour of jacobi.propagate
from the jacobi library.
- Changes from version 2.11.0:
* All builtin cost functions now support multidimensional data
* Matrix.to_dict was added for symmetry with
BasicValueView.to_dict
* For long-running fits, total runtime is now shown in FMin
display and total runtime can be accessed via property
FMin.time
* In binned fits when ndof is zero, show reduced chi2 = nan in
the FMin display instead of raising a ZeroDivisionError
* Tutorials and studies are now listed separately
* Tutorial for fits of multivariate data were added
* The cost function tutorial was improved
* Studies in regard to performance were added, including a
comparison with RooFit
-------------------------------------------------------------------
Sat Mar 5 15:40:18 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.10.0:
* Minuit.draw_mncontour now works with matplotlib >= 3.5.
* Builtin cost functions now work correctly when the mask is set
and data is updated on the existing cost function.
* Builtin cost functions are now more performant when used with
weighted binned data.
-------------------------------------------------------------------
Thu Jan 20 12:26:34 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.9.0:
* Minuit.draw_mncontour now works with matplotlib >= 3.5.
* Builtin cost functions now work correctly when the mask is set
and data is updated on the existing cost function.
* Builtin cost functions are now more performant when used with
weighted binned data.
-------------------------------------------------------------------
Wed Dec 8 14:38:34 UTC 2021 - pgajdos@suse.com
- version update to 2.8.4
Fixes
* Pickling of util.Matrix resulted in incomplete state after unpickling,
which would cause an exception when you tried to print the matrix
Documentation
* New tutorial on fitting PDFs that depend on a conditional variable
* Fixed JAX tutorial, adapting to change in their interface
* Extended documentation of cost functions
-------------------------------------------------------------------
Thu Sep 16 10:35:47 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.8.3:
* util.propagate now discriminates between diverging derivates
(using the value NaN for the derivate) and non-converging
derivatives (using the best value computed so far for the
derivative).
* Update documentation.
- Changes from version 2.8.2:
* Minuit.draw_mncontour can now be used by passing a single
float to keyword cl, in addition to passing a list of floats.
* Use pybind11::ssize_t everywhere instead of non-standard
ssize_t to fix compilation against Python-3.10 on Windows.
* Update documentation.
-------------------------------------------------------------------
Mon Aug 9 21:49:01 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.8.1:
* Undocumented changes.
-------------------------------------------------------------------
Wed Jul 28 11:36:59 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.8.0:
* Minor API change: Minuit.mncontour now raises RuntimeError
instead of ValueError if it is not called at a valid minimum
point.
* New features: Minuit.mncontour can now be called at any point
without running a minimiser before, similar to Minuit.minos.
* Fixes: Minuit.mncontour used to fail if called twice in a row.
-------------------------------------------------------------------
Thu Jun 17 18:46:27 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.6.1:
* Calling Minuit.fixed[...] = False on parameter that was not
fixed before lead to undefined behaviour in Minuit2 C++ code
(patch submitted to ROOT).
* Upgrade Minuit2 C++ code to latest ROOT master with simplified
internal class structure and class tags replaced with enums.
-------------------------------------------------------------------
Wed May 5 00:10:39 UTC 2021 - Atri Bhattacharya <badshah400@gmai.com>
- Update to version 2.6.0:
* Builtin cost functions now report the number of data points
with the attribute Cost.ndata.
* New attribute Minuit.ndof returns the degrees of freedom if
the cost function reports it or NaN.
* New attribute FMin.reduced_chi2 to report the reduced chi2 of
the fit; returns NaN if the reduced chi2 cannot be computed
for the cost function, in case of unbinned maximum-likelihood
or when the attribute Cost.ndata is missing.
-------------------------------------------------------------------
Thu Apr 22 00:58:19 UTC 2021 - Steve Kowalik <steven.kowalik@suse.com>
- Do not build for Python 3.6, due to no NumPy.
-------------------------------------------------------------------
Mon Feb 15 22:53:00 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.4.0:
* New features:
- iminuit.minimize: Keyword method now accepts "migrad" and
"simplex".
- iminuit.minimize: Keyword option now supports keyword "stra"
to set Minuit.strategy.
- iminuit.minimize: OptimizeResult.message now states if
errors are not reliable.
* Minuit now supports functions wrapped with functools.partial.
* Upgrade Minuit2 C++ code in ROOT to latest master with
following improvements:
- improvement of seed when using an analytical gradient.
- fix of last minimum state added twice to vector of minimum
states in some cases (saves a bit of memory).
* Documentation improvements.
* Updated tutorial about automatic differentiation, added
comparison of numba.njit and jax.jit.
- Changes from version 2.3.0:
* New features: iminuit.cost.BinnedNLL and
iminuit.cost.ExtendedBinnedNLL now support weighted binned
data.
* Bug-fixes: FMin.edm_goal now remains unchanged if Minuit.hesse
is run after Minuit.migrad.
* Other: Update to cibuildwheels-1.8.0 and workflow
simplification.
-------------------------------------------------------------------
Mon Dec 28 02:08:11 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.2.1:
* New features
- Minuit.profile, Minuit.mnprofile, Minuit.contour,
Minuit.draw_profile, Minuit.draw_mnprofile, and
Minuit.draw_contour can now be called with subtract_min=True
even if Minuit.fmin is None.
- iminuit.__version__ now also displays the ROOT version of
the C++ Minuit2 library.
- Support for adding constant numbers to cost functions, this
allows you to write sum(cost1, cost2, ...) and may be useful
to subtract a constant bias from the cost.
* Other
- Documentation improvements - Further transition to numpydoc.
- Clarified that iminuit is based on ROOT code - List full
iminuit version including ROOT version in docs.
- Added type hints to many interfaces (incomplete).
- Renamed iminuit._minuit to iminuit.minuit, making the module
public.
- Renamed iminuit._minimize to iminuit.minimize, making the
module public.
- pydocstyle added to pre-commit checks.
-------------------------------------------------------------------
Mon Dec 21 15:12:23 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.2.0:
* New features:
- Cost functions in iminuit.cost are now additive, creating a
new cost function with the union of parameters that returns
the sum of the results of the individual cost functions.
- iminuit.cost.NormalConstraint was added as a means to add
soft constraints on a parameter, can also be used to set up
a covariance matrix between several parameters.
* Other: Documentation improvements, started transition to numpydoc
- Drop _service file and tests.tar.xz source, since tests are now
included in the iminuit source tarball.
-------------------------------------------------------------------
Sat Dec 12 02:08:39 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 2.0.0:
* Long list of changes, see
<https://iminuit.readthedocs.io/en/stable/changelog.html#december-7-2020>.
- Add _service file to download tests from github directly as they
are not included in the pypi tarball any more
(gh#scikit-hep/iminuit#572).
- New BuildRequires: cmake >= 3.13.
-------------------------------------------------------------------
Sun Nov 29 17:18:42 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.5.4:
Fixed broken sdist package in 1.5.3
- Changes from version 1.5.3:
* Fixed a crash when throw_nan=True is used and the throw is
triggered.
* Add python_requires (gh#scikit-hep/iminuit#496) by @henryiii.
* Fixed buggy display of text matrix if npar != 2
(gh#scikit-hep/iminuit#493).
* Switch extern Minuit2 repo to official root repo
(gh#scikit-hep/iminuit#500), ROOT state: a5d880a434.
* Add ngrad and ngrad_total to FMin display, rename ncalls to
nfcn_total (gh#scikit-hep/iminuit#489).
* Use __getattr__ to hide deprecated interface from Python
help() (gh#scikit-hep/iminuit#491).
* Improvements to tutorials by @giammi56.
* Show number of gradient calls in FMin display (if nonzero)
instead of errordef value.
* Deprecated:
- Minuit.ncalls, use Minuit.nfcn instead
- Minuit.ngrads, use Minuit.ngrad instead
-------------------------------------------------------------------
Sat Oct 31 14:20:33 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.5.2:
- Fixed regression of the convergence rate of Minuit.migrad for
low precision cost functions by restoring a heuristic that
calls Migrad several times if convergence is not reached on
first try; made this heuristic configurable with iterate
keyword.
- Clarify in FMin display how the EDM convergence criterion uses
the EDM goal.
- Changes from version 1.5.1:
- Fixed mistake in “parameter at limit” warning, which did not
report correctly if parameter was at the upper limit.
- Changes from version 1.5.0:
* New features
- New more compact function minimum display with warning about
parameters at limit.
- Colours adjusted in HTML display to enhance contrast for
people with color blindness.
- Allow subclasses to use Minuit.from_array_func
(gh#scikit-hep/iminuit#467).
- Nicer tables on terminal thanks to unicode characters.
- Wrapped functions’ parameters are now recognised by iminuit.
- Dark theme friendlier HTML style
(gh#scikit-hep/iminuit#481).
* Bug-Fixes
- Fixed reported EDM goal for really small tolerances.
- Minuit.np_merrors now works correctly when some parameters
are fixed.
- Fixed HTML display of Minuit.matrix when some diagonal
elements are zero.
* Deprecated
- Removed nsplit option from Minuit.migrad
(gh#scikit-hep/iminuit#462).
-------------------------------------------------------------------
Wed Aug 5 10:13:54 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
- Update to version 1.4.9:
* Fixes an error introduced in 1.4.8 in Minuit.minos when var
keyword is used and at least one parameter is fixed.
- Changes from versions 1.3.9 through 1.4.8: See
https://iminuit.readthedocs.io/en/stable/changelog.html.
- Drop python2 builds: no longer supported upstream.
- Drop python-pytestrunner BuildRequires for test in favour of
python-pytest.
- Fix unresolved status for Leap 15.x on account of multiple
choices for python3-importlib-metadata
(python3-importlib-metadata and python3-importlib_metadata).
- Simplify %check section by dropping directory renaming (no
longer seems to be needed).
-------------------------------------------------------------------
Wed Nov 20 20:04:06 UTC 2019 - Todd R <toddrme2178@gmail.com>
- Update to 1.3.8
* fixed internal plotting when Minuit.from_array_func is used
* documentation updates
* reproduceable build
-------------------------------------------------------------------
Tue Aug 27 05:17:52 UTC 2019 - Jan Engelhardt <jengelh@inai.de>
- Trim filler wording from descriptions.
-------------------------------------------------------------------
Mon Aug 19 12:38:42 UTC 2019 - Atri Bhattacharya <badshah400@gmail.com>
- Initial version.
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