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Accepting request 942992 from home:bnavigator:branches:devel:languages:python:numeric

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- Update to v1.0.3
  **Potentially breaking change:**
  * argument ``x`` is now required for the ``guess`` method of
    Models (Issue #747; PR #748)
    To get reasonable estimates for starting values one should
    always supply both ``x`` and ``y`` values; in some cases it
    would work when only providing ``data`` (i.e., y-values). With
    the change above, ``x`` is now required in the ``guess`` method
    call, so scripts might need to be updated to explicitly supply
    ``x``.
  **Bug fixes/enhancements:**
  * do not overwrite user-specified figure titles in Model.plot()
    functions and allow setting with ``title`` keyword argument (PR
    #711)
  * preserve Parameters subclass in deepcopy (@jenshnielsen; PR
    #719)
  * coerce ``data`` and ``indepdent_vars`` to NumPy array with
    ``dtype=float64`` or ``dtype=complex128`` where applicable
    (Issues #723 and #728)
  * fix collision between parameter names in built-in models and
    user-specified parameters (Issue #710 and PR #732)
  * correct error message in PolynomialModel (@kremeyer; PR #737)
  * improved handling of altered JSON data (Issue #739; PR #740,
    reported by Matthew Giammar)
  * map ``max_nfev`` to ``maxiter`` when using
    ``differential_evolution`` (PR #749, reported by Olivier B.)
  * correct use of noise versus experimental uncertainty in the
    documentation (PR #751, reported by Andrés Zelcer)
  * specify return type of ``eval`` method more precisely and allow
    for plotting of (Complex)ConstantModel by coercing their

OBS-URL: https://build.opensuse.org/request/show/942992
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-lmfit?expand=0&rev=6
This commit is contained in:
Matej Cepl 2021-12-30 12:39:26 +00:00 committed by Git OBS Bridge
parent 635dd2b355
commit 3ead3c1698
4 changed files with 92 additions and 17 deletions
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lmfit-1.0.2.tar.gz
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lmfit-1.0.3.tar.gz Normal file
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66
python-lmfit.changes
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@ -1,3 +1,69 @@
-------------------------------------------------------------------
Tue Dec 28 19:11:00 UTC 2021 - Ben Greiner <code@bnavigator.de>
- Update to v1.0.3
**Potentially breaking change:**
* argument ``x`` is now required for the ``guess`` method of
Models (Issue #747; PR #748)
To get reasonable estimates for starting values one should
always supply both ``x`` and ``y`` values; in some cases it
would work when only providing ``data`` (i.e., y-values). With
the change above, ``x`` is now required in the ``guess`` method
call, so scripts might need to be updated to explicitly supply
``x``.
**Bug fixes/enhancements:**
* do not overwrite user-specified figure titles in Model.plot()
functions and allow setting with ``title`` keyword argument (PR
#711)
* preserve Parameters subclass in deepcopy (@jenshnielsen; PR
#719)
* coerce ``data`` and ``indepdent_vars`` to NumPy array with
``dtype=float64`` or ``dtype=complex128`` where applicable
(Issues #723 and #728)
* fix collision between parameter names in built-in models and
user-specified parameters (Issue #710 and PR #732)
* correct error message in PolynomialModel (@kremeyer; PR #737)
* improved handling of altered JSON data (Issue #739; PR #740,
reported by Matthew Giammar)
* map ``max_nfev`` to ``maxiter`` when using
``differential_evolution`` (PR #749, reported by Olivier B.)
* correct use of noise versus experimental uncertainty in the
documentation (PR #751, reported by Andrés Zelcer)
* specify return type of ``eval`` method more precisely and allow
for plotting of (Complex)ConstantModel by coercing their
``float``, ``int``, or ``complex`` return value to a
``numpy.ndarray`` (Issue #684 and PR #754)
* fix ``dho`` (Damped Harmonic Oscillator) lineshape (PR #755;
@rayosborn)
* reset ``Minimizer._abort`` to ``False`` before starting a new
fit (Issue #756 and PR #757; @azelcer)
* fix typo in ``guess_from_peak2d`` (@ivan-usovl; PR #758)
**Various:**
* update asteval dependency to >= 0.9.22 to avoid
DeprecationWarnings from NumPy v1.20.0 (PR #707)
* remove incorrectly spelled ``DonaichModel`` and ``donaich``
lineshape, deprecated in version 1.0.1 (PR #707)
* remove occurrences of OrderedDict throughout the code; dict is
order-preserving since Python 3.6 (PR #713)
* update the contributing instructions (PR #718; @martin-majlis)
* (again) defer import of matplotlib to when it is needed
(@zobristnicholas; PR #721)
* fix description of ``name`` argument in ``Parameters.add``
(@kristianmeyerr; PR #725)
* update dependencies, make sure a functional development
environment is installed on Windows (Issue #712)
* use ``setuptools_scm`` for version info instead of
``versioneer`` (PR #729)
* transition to using ``f-strings`` (PR #730)
* mark ``test_manypeaks_speed.py`` as flaky to avoid intermittent
test failures (repeat up to 5 times; PR #745)
* update scipy dependency to >= 1.14.0 (PR #751)
* improvement to output of examples in sphinx-gallery and use
higher resolution figures (PR #753)
* remove deprecated functions ``lmfit.printfuncs.report_errors``
and ``asteval`` argument in ``Parameters`` class (PR #759)
-------------------------------------------------------------------
Wed Feb 17 11:46:57 UTC 2021 - Ben Greiner <code@bnavigator.de>

37
python-lmfit.spec
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@ -16,20 +16,21 @@
#
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
%{?!python_module:%define python_module() python3-%{**}}
%define skip_python2 1
%define skip_python36 1
Name: python-lmfit
Version: 1.0.2
Version: 1.0.3
Release: 0
Summary: Least-Squares Minimization with Bounds and Constraints
License: MIT AND BSD-3-Clause
License: BSD-3-Clause AND MIT
URL: https://lmfit.github.io/lmfit-py/
Source: https://files.pythonhosted.org/packages/source/l/lmfit/lmfit-%{version}.tar.gz
BuildRequires: %{python_module setuptools_scm}
BuildRequires: %{python_module setuptools}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
Requires: python-asteval >= 0.9.21
Requires: python-asteval >= 0.9.22
Requires: python-numpy >= 1.18
Requires: python-scipy >= 1.3
Recommends: python-dill
@ -39,10 +40,10 @@ Recommends: python-pandas
Recommends: python-uncertainties >= 3.0.1
BuildArch: noarch
# SECTION test requirements
BuildRequires: %{python_module asteval >= 0.9.21}
BuildRequires: %{python_module asteval >= 0.9.22}
BuildRequires: %{python_module numpy >= 1.18}
BuildRequires: %{python_module pytest}
BuildRequires: %{python_module scipy >= 1.3}
BuildRequires: %{python_module scipy >= 1.4}
BuildRequires: %{python_module uncertainties >= 3.0.1}
# /SECTION
%python_subpackages
@ -69,6 +70,8 @@ questionable.
%prep
%setup -q -n lmfit-%{version}
sed -i -e '/^#!\//, 1d' lmfit/jsonutils.py
# only coverage related pytest flags here. remove
sed -i '/addopts/d' setup.cfg
%build
%python_build
@ -78,16 +81,16 @@ sed -i -e '/^#!\//, 1d' lmfit/jsonutils.py
%python_expand %fdupes %{buildroot}%{$python_sitelib}
%check
%{python_exec -c "import sys, lmfit, numpy, scipy, asteval, uncertainties, six;
%{python_exec -c "import sys, lmfit, numpy, scipy, asteval, uncertainties;
print('Python: {}\n\n'
'lmfit: {}, scipy: {}, numpy: {}, asteval: {}, uncertainties: {}, six: {}'.format(
'lmfit: {}, scipy: {}, numpy: {}, asteval: {}, uncertainties: {}'.format(
sys.version,
lmfit.__version__,
scipy.__version__,
numpy.__version__,
asteval.__version__,
uncertainties.__version__,
six.__version__))"}
uncertainties.__version__
))"}
cat << 'EOF' >> testexample.py
import numpy as np
@ -121,10 +124,16 @@ cat testexample.py
%python_exec testexample.py
# We don't care about speed, and test_itercb is architecture-specific
# test_model_nan_policy - fails on non x86_64
# test_shgo_scipy_vs_lmfit_2 - fails on non x86_64
%pytest -k 'not speed and not (test_model_nan_policy or test_shgo_scipy_vs_lmfit_2)'
# We don't care about speed
donttest="speed"
# these tests fail on non x86_64. Upstream does not care: https://github.com/lmfit/lmfit-py/issues/692
donttest+=" or test_model_nan_policy"
donttest+=" or test_shgo_scipy_vs_lmfit_2"
# fails on 32-bit
if [ $(getconf LONG_BIT) -ne 64 ]; then
donttest+=" or (test_itercb_minimizer_class and leastsq and False)"
fi
%pytest -k "not ($donttest)"
%files %{python_files}
%doc README.rst THANKS.txt