Accepting request 942992 from home:bnavigator:branches:devel:languages:python:numeric

- Update to v1.0.3
  **Potentially breaking change:**
  * argument ``x`` is now required for the ``guess`` method of
    Models (Issue #747; PR #748)
    To get reasonable estimates for starting values one should
    always supply both ``x`` and ``y`` values; in some cases it
    would work when only providing ``data`` (i.e., y-values). With
    the change above, ``x`` is now required in the ``guess`` method
    call, so scripts might need to be updated to explicitly supply
    ``x``.
  **Bug fixes/enhancements:**
  * do not overwrite user-specified figure titles in Model.plot()
    functions and allow setting with ``title`` keyword argument (PR
    #711)
  * preserve Parameters subclass in deepcopy (@jenshnielsen; PR
    #719)
  * coerce ``data`` and ``indepdent_vars`` to NumPy array with
    ``dtype=float64`` or ``dtype=complex128`` where applicable
    (Issues #723 and #728)
  * fix collision between parameter names in built-in models and
    user-specified parameters (Issue #710 and PR #732)
  * correct error message in PolynomialModel (@kremeyer; PR #737)
  * improved handling of altered JSON data (Issue #739; PR #740,
    reported by Matthew Giammar)
  * map ``max_nfev`` to ``maxiter`` when using
    ``differential_evolution`` (PR #749, reported by Olivier B.)
  * correct use of noise versus experimental uncertainty in the
    documentation (PR #751, reported by Andrés Zelcer)
  * specify return type of ``eval`` method more precisely and allow
    for plotting of (Complex)ConstantModel by coercing their

OBS-URL: https://build.opensuse.org/request/show/942992
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-lmfit?expand=0&rev=6

lmfit-1.0.2.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:67090ce56685cf7f92bd7358a1e7d4ad862b3758988109ec440e9825e5184b45
-size 306039

lmfit-1.0.3.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d067c3ea501f035af5d3c079e6e6e35dc3cc1ac7d439429a425b0aeb5a7858a2
+size 292475

python-lmfit.changes

@@ -1,3 +1,69 @@
+-------------------------------------------------------------------
+Tue Dec 28 19:11:00 UTC 2021 - Ben Greiner <code@bnavigator.de>
+
+- Update to v1.0.3
+  **Potentially breaking change:**
+  * argument ``x`` is now required for the ``guess`` method of
+    Models (Issue #747; PR #748)
+
+    To get reasonable estimates for starting values one should
+    always supply both ``x`` and ``y`` values; in some cases it
+    would work when only providing ``data`` (i.e., y-values). With
+    the change above, ``x`` is now required in the ``guess`` method
+    call, so scripts might need to be updated to explicitly supply
+    ``x``.
+  **Bug fixes/enhancements:**
+  * do not overwrite user-specified figure titles in Model.plot()
+    functions and allow setting with ``title`` keyword argument (PR
+    #711)
+  * preserve Parameters subclass in deepcopy (@jenshnielsen; PR
+    #719)
+  * coerce ``data`` and ``indepdent_vars`` to NumPy array with
+    ``dtype=float64`` or ``dtype=complex128`` where applicable
+    (Issues #723 and #728)
+  * fix collision between parameter names in built-in models and
+    user-specified parameters (Issue #710 and PR #732)
+  * correct error message in PolynomialModel (@kremeyer; PR #737)
+  * improved handling of altered JSON data (Issue #739; PR #740,
+    reported by Matthew Giammar)
+  * map ``max_nfev`` to ``maxiter`` when using
+    ``differential_evolution`` (PR #749, reported by Olivier B.)
+  * correct use of noise versus experimental uncertainty in the
+    documentation (PR #751, reported by Andrés Zelcer)
+  * specify return type of ``eval`` method more precisely and allow
+    for plotting of (Complex)ConstantModel by coercing their
+    ``float``, ``int``, or ``complex`` return value to a
+    ``numpy.ndarray`` (Issue #684 and PR #754)
+  * fix ``dho`` (Damped Harmonic Oscillator) lineshape (PR #755;
+    @rayosborn)
+  * reset ``Minimizer._abort`` to ``False`` before starting a new
+    fit (Issue #756 and PR #757; @azelcer)
+  * fix typo in ``guess_from_peak2d`` (@ivan-usovl; PR #758)
+  **Various:**
+  * update asteval dependency to >= 0.9.22 to avoid
+    DeprecationWarnings from NumPy v1.20.0 (PR #707)
+  * remove incorrectly spelled ``DonaichModel`` and ``donaich``
+    lineshape, deprecated in version 1.0.1 (PR #707)
+  * remove occurrences of OrderedDict throughout the code; dict is
+    order-preserving since Python 3.6 (PR #713)
+  * update the contributing instructions (PR #718; @martin-majlis)
+  * (again) defer import of matplotlib to when it is needed
+    (@zobristnicholas; PR #721)
+  * fix description of ``name`` argument in ``Parameters.add``
+    (@kristianmeyerr; PR #725)
+  * update dependencies, make sure a functional development
+    environment is installed on Windows (Issue #712)
+  * use ``setuptools_scm`` for version info instead of
+    ``versioneer`` (PR #729)
+  * transition to using ``f-strings`` (PR #730)
+  * mark ``test_manypeaks_speed.py`` as flaky to avoid intermittent
+    test failures (repeat up to 5 times; PR #745)
+  * update scipy dependency to >= 1.14.0 (PR #751)
+  * improvement to output of examples in sphinx-gallery and use
+    higher resolution figures (PR #753)
+  * remove deprecated functions ``lmfit.printfuncs.report_errors``
+    and ``asteval`` argument in ``Parameters`` class (PR #759)
+
 -------------------------------------------------------------------
 Wed Feb 17 11:46:57 UTC 2021 - Ben Greiner <code@bnavigator.de>
 

python-lmfit.spec

@@ -16,20 +16,21 @@
 #
 
 
-%{?!python_module:%define python_module() python-%{**} python3-%{**}}
+%{?!python_module:%define python_module() python3-%{**}}
 %define         skip_python2 1
 %define         skip_python36 1
 Name:           python-lmfit
-Version:        1.0.2
+Version:        1.0.3
 Release:        0
 Summary:        Least-Squares Minimization with Bounds and Constraints
-License:        MIT AND BSD-3-Clause
+License:        BSD-3-Clause AND MIT
 URL:            https://lmfit.github.io/lmfit-py/
 Source:         https://files.pythonhosted.org/packages/source/l/lmfit/lmfit-%{version}.tar.gz
+BuildRequires:  %{python_module setuptools_scm}
 BuildRequires:  %{python_module setuptools}
 BuildRequires:  fdupes
 BuildRequires:  python-rpm-macros
-Requires:       python-asteval >= 0.9.21
+Requires:       python-asteval >= 0.9.22
 Requires:       python-numpy >= 1.18
 Requires:       python-scipy >= 1.3
 Recommends:     python-dill
@@ -39,10 +40,10 @@ Recommends:     python-pandas
 Recommends:     python-uncertainties >= 3.0.1
 BuildArch:      noarch
 # SECTION test requirements
-BuildRequires:  %{python_module asteval >= 0.9.21}
+BuildRequires:  %{python_module asteval >= 0.9.22}
 BuildRequires:  %{python_module numpy >= 1.18}
 BuildRequires:  %{python_module pytest}
-BuildRequires:  %{python_module scipy >= 1.3}
+BuildRequires:  %{python_module scipy >= 1.4}
 BuildRequires:  %{python_module uncertainties >= 3.0.1}
 # /SECTION
 %python_subpackages
@@ -69,6 +70,8 @@ questionable.
 %prep
 %setup -q -n lmfit-%{version}
 sed -i -e '/^#!\//, 1d' lmfit/jsonutils.py
+# only coverage related pytest flags here. remove
+sed -i '/addopts/d' setup.cfg
 
 %build
 %python_build
@@ -78,16 +81,16 @@ sed -i -e '/^#!\//, 1d' lmfit/jsonutils.py
 %python_expand %fdupes %{buildroot}%{$python_sitelib}
 
 %check
-%{python_exec -c "import sys, lmfit, numpy, scipy, asteval, uncertainties, six;
+%{python_exec -c "import sys, lmfit, numpy, scipy, asteval, uncertainties;
 print('Python: {}\n\n'
-'lmfit: {}, scipy: {}, numpy: {}, asteval: {}, uncertainties: {}, six: {}'.format(
+'lmfit: {}, scipy: {}, numpy: {}, asteval: {}, uncertainties: {}'.format(
     sys.version,
     lmfit.__version__,
     scipy.__version__,
     numpy.__version__,
     asteval.__version__,
-    uncertainties.__version__,
+    uncertainties.__version__
-    six.__version__))"}
+))"}
 
 cat << 'EOF' >> testexample.py
 import numpy as np
@@ -121,10 +124,16 @@ cat testexample.py
 
 %python_exec testexample.py
 
-# We don't care about speed, and test_itercb is architecture-specific
+# We don't care about speed
-# test_model_nan_policy - fails on non x86_64
+donttest="speed"
-# test_shgo_scipy_vs_lmfit_2 - fails on non x86_64
+# these tests fail on non x86_64. Upstream does not care: https://github.com/lmfit/lmfit-py/issues/692
-%pytest -k 'not speed and not (test_model_nan_policy or test_shgo_scipy_vs_lmfit_2)'
+donttest+=" or test_model_nan_policy"
+donttest+=" or test_shgo_scipy_vs_lmfit_2"
+# fails on 32-bit
+if [ $(getconf LONG_BIT) -ne 64 ]; then
+  donttest+=" or (test_itercb_minimizer_class and leastsq and False)"
+fi
+%pytest -k "not ($donttest)"
 
 %files %{python_files}
 %doc README.rst THANKS.txt