python-numpy/python-numpy.spec

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#
# spec file for package python-numpy
#
# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
%global flavor @BUILD_FLAVOR@%{nil}
%define ver 1.13.3
%define _ver 1_13_3
%define pname python-numpy
%bcond_with ringdisabled
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
%if "%flavor" == ""
ExclusiveArch: do_not_build
Accepting request 426983 from devel:languages:python - use pypi.io as Source URL - Don't include cblas-devel on SLES 12 - update to 1.11.1: - #7506 BUG: Make sure numpy imports on python 2.6 when nose is unavailable. - #7530 BUG: Floating exception with invalid axis in np.lexsort. - #7535 BUG: Extend glibc complex trig functions blacklist to glibc < 2.18. - #7551 BUG: Allow graceful recovery for no compiler. - #7558 BUG: Constant padding expected wrong type in constant_values. - #7578 BUG: Fix OverflowError in Python 3.x. in swig interface. - #7590 BLD: Fix configparser.InterpolationSyntaxError. - #7597 BUG: Make np.ma.take work on scalars. - #7608 BUG: linalg.norm(): Don't convert object arrays to float. - #7638 BLD: Correct C compiler customization in system_info.py. - #7654 BUG: ma.median of 1d array should return a scalar. - #7656 BLD: Remove hardcoded Intel compiler flag -xSSE4.2. - #7660 BUG: Temporary fix for str(mvoid) for object field types. - #7665 BUG: Fix incorrect printing of 1D masked arrays. - #7670 BUG: Correct initial index estimate in histogram. - #7671 BUG: Boolean assignment no GIL release when transfer needs API. - #7676 BUG: Fix handling of right edge of final histogram bin. - #7680 BUG: Fix np.clip bug NaN handling for Visual Studio 2015. - #7724 BUG: Fix segfaults in np.random.shuffle. - #7731 MAINT: Change mkl_info.dir_env_var from MKL to MKLROOT. OBS-URL: https://build.opensuse.org/request/show/426983 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-numpy?expand=0&rev=50
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%endif
%if "%flavor" == "standard"
%bcond_with hpc
%ifarch armv6l s390x
%bcond_with openblas
%else
%bcond_without openblas
%endif
%endif
%if "%flavor" == "gnu-hpc"
%bcond_without hpc
Accepting request 426983 from devel:languages:python - use pypi.io as Source URL - Don't include cblas-devel on SLES 12 - update to 1.11.1: - #7506 BUG: Make sure numpy imports on python 2.6 when nose is unavailable. - #7530 BUG: Floating exception with invalid axis in np.lexsort. - #7535 BUG: Extend glibc complex trig functions blacklist to glibc < 2.18. - #7551 BUG: Allow graceful recovery for no compiler. - #7558 BUG: Constant padding expected wrong type in constant_values. - #7578 BUG: Fix OverflowError in Python 3.x. in swig interface. - #7590 BLD: Fix configparser.InterpolationSyntaxError. - #7597 BUG: Make np.ma.take work on scalars. - #7608 BUG: linalg.norm(): Don't convert object arrays to float. - #7638 BLD: Correct C compiler customization in system_info.py. - #7654 BUG: ma.median of 1d array should return a scalar. - #7656 BLD: Remove hardcoded Intel compiler flag -xSSE4.2. - #7660 BUG: Temporary fix for str(mvoid) for object field types. - #7665 BUG: Fix incorrect printing of 1D masked arrays. - #7670 BUG: Correct initial index estimate in histogram. - #7671 BUG: Boolean assignment no GIL release when transfer needs API. - #7676 BUG: Fix handling of right edge of final histogram bin. - #7680 BUG: Fix np.clip bug NaN handling for Visual Studio 2015. - #7724 BUG: Fix segfaults in np.random.shuffle. - #7731 MAINT: Change mkl_info.dir_env_var from MKL to MKLROOT. OBS-URL: https://build.opensuse.org/request/show/426983 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-numpy?expand=0&rev=50
2016-09-17 14:34:03 +02:00
%endif
%if "%flavor" == "gnu6-hpc"
%bcond_without hpc
%define c_f_ver 6
Accepting request 426983 from devel:languages:python - use pypi.io as Source URL - Don't include cblas-devel on SLES 12 - update to 1.11.1: - #7506 BUG: Make sure numpy imports on python 2.6 when nose is unavailable. - #7530 BUG: Floating exception with invalid axis in np.lexsort. - #7535 BUG: Extend glibc complex trig functions blacklist to glibc < 2.18. - #7551 BUG: Allow graceful recovery for no compiler. - #7558 BUG: Constant padding expected wrong type in constant_values. - #7578 BUG: Fix OverflowError in Python 3.x. in swig interface. - #7590 BLD: Fix configparser.InterpolationSyntaxError. - #7597 BUG: Make np.ma.take work on scalars. - #7608 BUG: linalg.norm(): Don't convert object arrays to float. - #7638 BLD: Correct C compiler customization in system_info.py. - #7654 BUG: ma.median of 1d array should return a scalar. - #7656 BLD: Remove hardcoded Intel compiler flag -xSSE4.2. - #7660 BUG: Temporary fix for str(mvoid) for object field types. - #7665 BUG: Fix incorrect printing of 1D masked arrays. - #7670 BUG: Correct initial index estimate in histogram. - #7671 BUG: Boolean assignment no GIL release when transfer needs API. - #7676 BUG: Fix handling of right edge of final histogram bin. - #7680 BUG: Fix np.clip bug NaN handling for Visual Studio 2015. - #7724 BUG: Fix segfaults in np.random.shuffle. - #7731 MAINT: Change mkl_info.dir_env_var from MKL to MKLROOT. OBS-URL: https://build.opensuse.org/request/show/426983 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-numpy?expand=0&rev=50
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%endif
%if %{without hpc}
%define package_name %{pname}
%define p_python_sitearch %python_sitearch
%define p_prefix %_prefix
%define p_bindir %_bindir
%else
# Magic for OBS Staging. Only build the flavors required by
# other packages in the ring.
%if %{with ringdisabled}
ExclusiveArch: do_not_build
%endif
%{!?compiler_family:%global compiler_family gnu}
%{hpc_init -c %compiler_family %{?c_f_ver:-v %{c_f_ver}} %{?mpi_ver:-V %{mpi_ver}}}
%define package_name %{hpc_package_name %_ver}
%define p_python_sitearch %hpc_python_sitearch
%define p_prefix %hpc_prefix
%define p_bindir %hpc_bindir
%endif
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
Name: %{package_name}
Version: %ver
Release: 0
Summary: NumPy array processing for numbers, strings, records and objects
License: BSD-3-Clause
Group: Development/Libraries/Python
Accepting request 426983 from devel:languages:python - use pypi.io as Source URL - Don't include cblas-devel on SLES 12 - update to 1.11.1: - #7506 BUG: Make sure numpy imports on python 2.6 when nose is unavailable. - #7530 BUG: Floating exception with invalid axis in np.lexsort. - #7535 BUG: Extend glibc complex trig functions blacklist to glibc < 2.18. - #7551 BUG: Allow graceful recovery for no compiler. - #7558 BUG: Constant padding expected wrong type in constant_values. - #7578 BUG: Fix OverflowError in Python 3.x. in swig interface. - #7590 BLD: Fix configparser.InterpolationSyntaxError. - #7597 BUG: Make np.ma.take work on scalars. - #7608 BUG: linalg.norm(): Don't convert object arrays to float. - #7638 BLD: Correct C compiler customization in system_info.py. - #7654 BUG: ma.median of 1d array should return a scalar. - #7656 BLD: Remove hardcoded Intel compiler flag -xSSE4.2. - #7660 BUG: Temporary fix for str(mvoid) for object field types. - #7665 BUG: Fix incorrect printing of 1D masked arrays. - #7670 BUG: Correct initial index estimate in histogram. - #7671 BUG: Boolean assignment no GIL release when transfer needs API. - #7676 BUG: Fix handling of right edge of final histogram bin. - #7680 BUG: Fix np.clip bug NaN handling for Visual Studio 2015. - #7724 BUG: Fix segfaults in np.random.shuffle. - #7731 MAINT: Change mkl_info.dir_env_var from MKL to MKLROOT. OBS-URL: https://build.opensuse.org/request/show/426983 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-numpy?expand=0&rev=50
2016-09-17 14:34:03 +02:00
Url: http://www.numpy.org/
Source: https://pypi.io/packages/source/n/numpy/numpy-%{version}.zip
# PATCH-FIX-OPENSUSE numpy-buildfix.patch -- openSUSE-specific build fixes
Patch0: numpy-buildfix.patch
# PATCH-FIX-OPENSUSE numpy-1.9.0-remove-__declspec.patch -- fix for spurious compiler warnings that cause build failure
Patch1: numpy-1.9.0-remove-__declspec.patch
%if 0%{?suse_version}
BuildRequires: fdupes
%endif
%if %{without hpc}
%if 0%{?suse_version}
BuildRequires: gcc-fortran
%else
BuildRequires: gcc-gfortran
%endif
%if %{with openblas}
BuildRequires: openblas-devel
%else
BuildRequires: blas-devel
BuildRequires: lapack-devel
%endif
%else
BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
BuildRequires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
BuildRequires: lua-lmod
BuildRequires: suse-hpc
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc
Requires: lua-lmod
%endif
BuildRequires: %{python_module Cython}
BuildRequires: %{python_module devel}
BuildRequires: %{python_module setuptools}
BuildRequires: python-rpm-macros
BuildRequires: unzip
%{?with_hpc:%{hpc_requires}}
BuildRoot: %{_tmppath}/%{name}-%{version}-build
%python_subpackages
%description
NumPy is a general-purpose array-processing package designed to
efficiently manipulate large multi-dimensional arrays of arbitrary
records without sacrificing too much speed for small multi-dimensional
arrays. NumPy is built on the Numeric code base and adds features
introduced by numarray as well as an extended C-API and the ability to
create arrays of arbitrary type which also makes NumPy suitable for
interfacing with general-purpose data-base applications.
There are also basic facilities for discrete fourier transform,
basic linear algebra and random number generation.
%{?with_hpc:%{hpc_python_master_package -L -a }}
%package devel
Summary: Development files for numpy applications
Group: Development/Libraries/Python
Requires: %{name} = %{version}
Requires: python-devel
%if %{without hpc}
%if %{with openblas}
Requires: openblas-devel
%else
Requires: blas-devel
Requires: lapack-devel
%endif
%else
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
%hpc_requires_devel
%endif
%description devel
This package contains files for developing applications using numpy.
%{?with_hpc:%{hpc_python_master_package devel -a }}
%prep
%setup -q -n numpy-%{version}
%patch0 -p1
%patch1 -p1
# Fix non-executable scripts
sed -i '1s/^#!.*$//' numpy/{compat/setup,distutils/{conv_template,cpuinfo,exec_command,from_template,setup,system_info},f2py/{__init__,auxfuncs,capi_maps,cb_rules,cfuncs,common_rules,crackfortran,diagnose,f2py2e,f90mod_rules,func2subr,rules,setup,use_rules},ma/setup,matrixlib/setup,setup,testing/{print_coercion_tables,setup}}.py
%build
%if %{with hpc}
%hpc_setup
module load openblas
export CFLAGS="$(pkg-config --cflags openblas) %{optflags} -fno-strict-aliasing" LIBS="$(pkg-config --libs openblas)"
cat > site.cfg <<EOF
[openblas]
libraries = openblas
library_dirs = $OPENBLAS_LIB
include_dirs = $OPENBLAS_INC
EOF
%else
export CFLAGS="%{optflags} -fno-strict-aliasing"
%endif
%python_build
%install
%{?with_hpc:%{hpc_setup}}
%{?with_hpc:module load openblas}
%python_exec setup.py install --prefix=%{p_prefix} --root=%{buildroot}
%if 0%{?suse_version}
%fdupes %{buildroot}%{p_prefix}
%endif
%if %{without hpc}
%python_expand rm -rf %{buildroot}%{$python_sitearch}/numpy/{,core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests # Don't package testsuite
%else
%define hpc_module_pname python${py_ver/.*/}-numpy
%{python_expand # Don't package testsuite
py_ver=%{$python_version}
sitesearch_path=`$python -c "import sysconfig as s; print(s.get_paths(vars={'platbase':'%{hpc_prefix}','base':'%{hpc_prefix}'}).get('platlib'))"`
rm -rf %{buildroot}${sitesearch_path}/numpy/{,core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests
%hpc_write_modules_files
#%%Module1.0#####################################################################
proc ModulesHelp { } {
puts stderr " "
puts stderr "This module loads the %{pname} library built with the %{compiler_family} compiler"
puts stderr "toolchain."
puts stderr "\nVersion %{version}\n"
}
module-whatis "Name: %{pname} built with %{compiler_family} compiler"
module-whatis "Version: %{version}"
module-whatis "Category: python module"
module-whatis "Description: %{summary}"
module-whatis "URL %{url}"
set version %{version}
if [ expr [ module-info mode load ] || [module-info mode display ] ] {
if { ![is-loaded intel] && ![is-loaded openblas] } {
module load openblas
}
}
prepend-path PATH %{hpc_bindir}
prepend-path PYTHONPATH ${sitesearch_path}
setenv %{hpc_upcase_trans_hyph %pname}_DIR %{hpc_prefix}
setenv %{hpc_upcase_trans_hyph %pname}_BIN %{hpc_bindir}
family "NumPy"
EOF
}
%endif
%files %{python_files}
%defattr(-,root,root)
%doc *.txt
%python2_only %{p_bindir}/f2py2
%python3_only %{p_bindir}/f2py3
%{p_python_sitearch}/numpy/
%{p_python_sitearch}/numpy-%{version}-py*.egg-info
%exclude %{p_python_sitearch}/numpy/*/*/*.c
%exclude %{p_python_sitearch}/numpy/*/*.h
%exclude %{p_python_sitearch}/numpy/*/*/*.h
%exclude %{p_python_sitearch}/numpy/*/*/*/*.h
%exclude %{p_python_sitearch}/numpy/core/lib/libnpymath.a
%if %{with hpc}
%define hpc_module_pname python%(a=%{hpc_python_version}; echo -n ${a/.*/})-numpy
%{hpc_modules_files}
%{hpc_dirs}
%dir %hpc_bindir
%dir %{hpc_libdir}/python%{hpc_python_version}
%dir %{p_python_sitearch}
%endif
%files %{python_files devel}
%defattr(-,root,root)
%doc LICENSE.txt
%{p_python_sitearch}/numpy/*/*/*.c
%{p_python_sitearch}/numpy/*/*.h
%{p_python_sitearch}/numpy/*/*/*.h
%{p_python_sitearch}/numpy/*/*/*/*.h
%{p_python_sitearch}/numpy/core/lib/libnpymath.a
%changelog