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Accepting request 1104294 from devel:languages:python:numeric

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- Use %pyproject_wheel and %pyproject_install macros
- Disable broken tests in armv7l (bsc#1212710)
- limit to Cython < 3 
- update to 1.25.2:
  * Upgrade various build dependencies.
  * use ``-ftrapping-math`` with Clang on macOS
  * properly handle negative indexes in ufunc_at fast path
  * PyObject_IsTrue and PyObject_Not error handling in setflags
  * histogram small range robust
  * Update meson.build files from main branch
  * exclude min, max and round from ``np.__all__``
  * Dependabot updates
  * Fix the signature for np.array_api.take
  * update OpenBLAS to an intermeidate commit
  * Fix reference count leak in str(scalar).
  * fix invalid function pointer conversion error
  * Factor out slow ``getenv`` call used for memory policy warning
  * correct URL in cirrus.star [skip cirrus]
  * Fix C types in scalartypes
  * do not modify the input to ufunc_at
  * Further fixes to indexing loop and added tests
- Update to 1.25.1:
  * NumPy 1.25.1 is a maintenance release that fixes bugs and regressions
    discovered after the 1.25.0 release. The Python versions supported by
    this release are 3.9-3.11.
  * #23968: MAINT: prepare 1.25.x for further development
  * #24036: BLD: Port long double identification to C for meson
  * #24037: BUG: Fix reduction return NULL to be goto fail
  * #24038: BUG: Avoid undefined behavior in array.astype()
  * #24039: BUG: Ensure __array_ufunc__ works without any kwargs passed
  * #24117: MAINT: Pin urllib3 to avoid anaconda-client bug.
  * #24118: TST: Pin pydantic<2 in Pyodide workflow
  * #24119: MAINT: Bump pypa/cibuildwheel from 2.13.0 to 2.13.1
  * #24120: MAINT: Bump actions/checkout from 3.5.2 to 3.5.3
  * #24122: BUG: Multiply or Divides using SIMD without a full vector can...
  * #24127: MAINT: testing for IS_MUSL closes #24074
  * #24128: BUG: Only replace dtype temporarily if dimensions changed
  * #24129: MAINT: Bump actions/setup-node from 3.6.0 to 3.7.0
  * #24134: BUG: Fix private procedures in f2py modules
- Skipped 1.25.0:
  * The NumPy 1.25.0 release continues the ongoing work to improve the
    handling and promotion of dtypes, increase the execution speed, and
    clarify the documentation. There has also been work to prepare for the
    future NumPy 2.0.0 release, resulting in a large number of new and
    expired deprecation. Highlights are:
    - Support for MUSL, there are now MUSL wheels.
    - Support the Fujitsu C/C++ compiler.
    - Object arrays are now supported in einsum
    - Support for inplace matrix multiplication (@=).
  * Full changelog: https://github.com/numpy/numpy/releases/tag/v1.25.0
The Python versions supported in this release are 3.9-3.11.
- Remove upstream patch:
  * remove-deprecated-hypothesis-funcs.patch

OBS-URL: https://build.opensuse.org/request/show/1104294
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-numpy?expand=0&rev=119
This commit is contained in:
Ana Guerrero 2023-08-18 17:27:35 +00:00 committed by Git OBS Bridge
commit 0dffee2e95
5 changed files with 96 additions and 29 deletions
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3
numpy-1.24.2.tar.gz
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@ -1,3 +0,0 @@
version https://git-lfs.github.com/spec/v1
oid sha256:003a9f530e880cb2cd177cba1af7220b9aa42def9c4afc2a2fc3ee6be7eb2b22
size 10906862

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numpy-1.25.2.tar.gz (Stored with Git LFS) Normal file
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69
python-numpy.changes
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@ -1,3 +1,72 @@
-------------------------------------------------------------------
Wed Aug 16 11:31:28 UTC 2023 - Daniel Garcia <daniel.garcia@suse.com>
- Use %pyproject_wheel and %pyproject_install macros
- Disable broken tests in armv7l (bsc#1212710)
-------------------------------------------------------------------
Mon Aug 14 11:41:16 UTC 2023 - Dirk Müller <dmueller@suse.com>
- limit to Cython < 3
-------------------------------------------------------------------
Mon Aug 14 07:07:51 UTC 2023 - Dirk Müller <dmueller@suse.com>
- update to 1.25.2:
* Upgrade various build dependencies.
* use ``-ftrapping-math`` with Clang on macOS
* properly handle negative indexes in ufunc_at fast path
* PyObject_IsTrue and PyObject_Not error handling in setflags
* histogram small range robust
* Update meson.build files from main branch
* exclude min, max and round from ``np.__all__``
* Dependabot updates
* Fix the signature for np.array_api.take
* update OpenBLAS to an intermeidate commit
* Fix reference count leak in str(scalar).
* fix invalid function pointer conversion error
* Factor out slow ``getenv`` call used for memory policy warning
* correct URL in cirrus.star [skip cirrus]
* Fix C types in scalartypes
* do not modify the input to ufunc_at
* Further fixes to indexing loop and added tests
-------------------------------------------------------------------
Thu Jul 20 13:21:25 UTC 2023 - Guillaume GARDET <guillaume.gardet@opensuse.org>
- Update to 1.25.1:
* NumPy 1.25.1 is a maintenance release that fixes bugs and regressions
discovered after the 1.25.0 release. The Python versions supported by
this release are 3.9-3.11.
* #23968: MAINT: prepare 1.25.x for further development
* #24036: BLD: Port long double identification to C for meson
* #24037: BUG: Fix reduction return NULL to be goto fail
* #24038: BUG: Avoid undefined behavior in array.astype()
* #24039: BUG: Ensure __array_ufunc__ works without any kwargs passed
* #24117: MAINT: Pin urllib3 to avoid anaconda-client bug.
* #24118: TST: Pin pydantic<2 in Pyodide workflow
* #24119: MAINT: Bump pypa/cibuildwheel from 2.13.0 to 2.13.1
* #24120: MAINT: Bump actions/checkout from 3.5.2 to 3.5.3
* #24122: BUG: Multiply or Divides using SIMD without a full vector can...
* #24127: MAINT: testing for IS_MUSL closes #24074
* #24128: BUG: Only replace dtype temporarily if dimensions changed
* #24129: MAINT: Bump actions/setup-node from 3.6.0 to 3.7.0
* #24134: BUG: Fix private procedures in f2py modules
- Skipped 1.25.0:
* The NumPy 1.25.0 release continues the ongoing work to improve the
handling and promotion of dtypes, increase the execution speed, and
clarify the documentation. There has also been work to prepare for the
future NumPy 2.0.0 release, resulting in a large number of new and
expired deprecation. Highlights are:
- Support for MUSL, there are now MUSL wheels.
- Support the Fujitsu C/C++ compiler.
- Object arrays are now supported in einsum
- Support for inplace matrix multiplication (@=).
* Full changelog: https://github.com/numpy/numpy/releases/tag/v1.25.0
The Python versions supported in this release are 3.9-3.11.
- Remove upstream patch:
* remove-deprecated-hypothesis-funcs.patch
-------------------------------------------------------------------
Fri Jun 23 12:23:14 UTC 2023 - Stefan Brüns <stefan.bruens@rwth-aachen.de>

37
python-numpy.spec
View File

@ -17,8 +17,8 @@
%global flavor @BUILD_FLAVOR@%{nil}
%define ver 1.24.2
%define _ver 1_24_2
%define ver 1.25.2
%define _ver 1_25_2
%define pname python-numpy
%define plainpython python
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
@ -88,12 +88,12 @@ Patch0: numpy-buildfix.patch
Patch1: numpy-1.9.0-remove-__declspec.patch
# PATCH-FIX-OPENSUSE Ignore DeprecationWarnings when importing pkg_resources
Patch2: ignore-pkg_resources-deprecation.patch
# PATCH-FIX-OPENSUSE Do not call a deprecated hypothesis health check function
Patch3: remove-deprecated-hypothesis-funcs.patch
BuildRequires: %{python_module Cython >= 0.29.30}
BuildRequires: %{python_module Cython >= 0.29.30 with %python-Cython < 3}
BuildRequires: %{python_module base >= 3.8}
BuildRequires: %{python_module devel}
BuildRequires: %{python_module pip}
BuildRequires: %{python_module setuptools >= 60.0.0}
BuildRequires: %{python_module wheel}
BuildRequires: gcc-c++
BuildRequires: python-rpm-macros >= 20210929
BuildConflicts: gcc11 < 11.2
@ -101,8 +101,8 @@ BuildConflicts: gcc11 < 11.2
BuildRequires: fdupes
%endif
# SECTION test requirements
BuildRequires: %{python_module pytest >= 6.2.5}
BuildRequires: %{python_module hypothesis >= 6.24.1}
BuildRequires: %{python_module pytest >= 7.4.0}
BuildRequires: %{python_module hypothesis >= 6.75.0}
BuildRequires: %{python_module pytest-xdist}
BuildRequires: %{python_module testsuite}
BuildRequires: %{python_module typing-extensions >= 4.2.0}
@ -136,7 +136,9 @@ Requires(postun):update-alternatives
%else
BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
BuildRequires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
%ifnarch %ix86 %arm
BuildRequires: lua-lmod
%endif
BuildRequires: suse-hpc
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc
%endif
@ -184,7 +186,7 @@ This package contains files for developing applications using numpy.
%prep
%autosetup -p1 -n numpy-%{version}
# Fix non-executable scripts
sed -i '1s/^#!.*$//' numpy/{compat/setup,random/_examples/cython/setup,distutils/{conv_template,cpuinfo,exec_command,from_template,setup,system_info},f2py/{__init__,auxfuncs,capi_maps,cb_rules,cfuncs,common_rules,crackfortran,diagnose,f2py2e,f90mod_rules,func2subr,rules,setup,use_rules},ma/{setup,bench},matrixlib/setup,setup,testing/{print_coercion_tables,setup}}.py
sed -i '1s/^#!.*$//' numpy/{compat/setup,random/_examples/cython/setup,distutils/{conv_template,cpuinfo,exec_command,from_template,setup,system_info},f2py/{__init__,auxfuncs,capi_maps,cb_rules,cfuncs,common_rules,crackfortran,diagnose,f2py2e,f90mod_rules,func2subr,rules,setup,use_rules},matrixlib/setup,setup,testing/{print_coercion_tables,setup}}.py
sed -i '1s/^#!.*$//' numpy/random/_examples/cython/*.pyx
# force cythonization
@ -206,13 +208,13 @@ EOF
export CFLAGS="%{optflags} -fno-strict-aliasing"
%endif
%python_build
%pyproject_wheel
%install
%{?with_hpc:%hpc_setup}
%{?with_hpc:module load openblas}
%python_exec setup.py install --prefix=%{p_prefix} --root=%{buildroot}
%pyproject_install --prefix %{p_prefix} --root %{buildroot}
%if !%{with hpc}
%python_clone -a %{buildroot}%{_bindir}/f2py
@ -314,7 +316,16 @@ test_failok+=" or test_float_remainder_overflow"
test_failok+=" or test_identityless_reduction_huge_array"
test_failok+=" or test_huge_vectordot"
# invalid int type for 32bit
test_failok+=" or (test_kind and test_all)"
test_failok+=" or (test_kind and test_quad_precision)"
test_failok+=" or (test_kind and test_int)"
test_failok+=" or (test_kind and test_real)"
test_failok+=" or (test_multinomial_pvals_float32)"
%endif
%ifarch %{arm}
# https://github.com/numpy/numpy/issues/24001
test_failok+=" or (test_cpu_features and test_impossible_feature_enable)"
test_failok+=" or (test_cpu_features and test_features)"
test_failok+=" or (test_umath and test_unary_spurious_fpexception)"
%endif
%ifarch riscv64
# These tests fail due to non-portable assumptions about the signbit of NaN
@ -365,7 +376,7 @@ popd
%endif
%{_bindir}/f2py%{python_bin_suffix}
%{python_sitearch}/numpy/
%{python_sitearch}/numpy-%{version}-py*.egg-info
%{python_sitearch}/numpy-%{version}*-info
%license %{python_sitearch}/numpy/LICENSE.txt
%exclude %{python_sitearch}/numpy/core/include/
%exclude %{python_sitearch}/numpy/distutils/mingw/*.c
@ -383,7 +394,7 @@ popd
%endif
%{p_bindir}/f2py%{python_bin_suffix}
%{p_python_sitearch}/numpy/
%{p_python_sitearch}/numpy-%{version}-py*.egg-info
%{p_python_sitearch}/numpy-%{version}*-info
%license %{p_python_sitearch}/numpy/LICENSE.txt
%exclude %{p_python_sitearch}/numpy/core/include/
%exclude %{p_python_sitearch}/numpy/core/lib/libnpymath.a

13
remove-deprecated-hypothesis-funcs.patch
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@ -1,13 +0,0 @@
Index: numpy-1.24.2/numpy/conftest.py
===================================================================
--- numpy-1.24.2.orig/numpy/conftest.py
+++ numpy-1.24.2/numpy/conftest.py
@@ -30,7 +30,7 @@ hypothesis.settings.register_profile(
hypothesis.settings.register_profile(
name="np.test() profile",
deadline=None, print_blob=True, database=None, derandomize=True,
- suppress_health_check=hypothesis.HealthCheck.all(),
+ suppress_health_check=list(hypothesis.HealthCheck),
)
# Note that the default profile is chosen based on the presence
# of pytest.ini, but can be overridden by passing the