Accepting request 1198038 from home:bnavigator:branches:devel:languages:python:numeric
- Update to 2.1.0
* Support for Python 3.13.
* Preliminary support for free threaded Python 3.13.
* Support for the array-api 2023.12 standard.
## New functions
* A new function np.unstack(array, axis=...) was added, which
splits an array into a tuple of arrays along an axis. It serves
as the inverse of numpy.stack. (gh-26579)
## Deprecations
* The fix_imports keyword argument in numpy.save is deprecated.
Since NumPy 1.17, numpy.save uses a pickle protocol that no
longer supports Python 2, and ignored fix_imports keyword. This
keyword is kept only for backward compatibility. It is now
deprecated. (gh-26452)
* Passing non-integer inputs as the first argument of bincount is
now deprecated, because such inputs are silently cast to
integers with no warning about loss of precision. (gh-27076)
## Expired deprecations
* Scalars and 0D arrays are disallowed for numpy.nonzero and
numpy.ndarray.nonzero. (gh-26268)
* set_string_function internal function was removed and
PyArray_SetStringFunction was stubbed out. (gh-26611)
## C API changes
* API symbols now hidden but customizable
* Many shims removed from npy_3kcompat.h
* New PyUFuncObject field process_core_dims_func
## New Features
* Preliminary Support for Free-Threaded CPython 3.13
* f2py can generate freethreading-compatible C extensions
## Improvements
* histogram auto-binning now returns bin sizes >=1 for integer
input data
* ndarray shape-type parameter is now covariant and bound to
tuple[int, ...]
* np.quantile with method closest_observation chooses nearest
even order statistic
* lapack_lite is now thread safe
* The numpy.printoptions context manager is now thread and
async-safe
* Type hinting numpy.polynomial
* Improved numpy.dtypes type hints
## Performance improvements and changes
* ma.cov and ma.corrcoef are now significantly faster
## Changes
* ma.corrcoef may return a slightly different result
* Cast-safety fixes in copyto and full
- Release 2.0.1
## Improvements
* np.quantile with method closest_observation chooses nearest
even order statistic
OBS-URL: https://build.opensuse.org/request/show/1198038
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-numpy?expand=0&rev=165
This commit is contained in:
Git OBS Bridge
commit
adcc16f741
23
.gitattributes
vendored
Normal file
23
.gitattributes
vendored
Normal file
@ -0,0 +1,23 @@
|
||||
## Default LFS
|
||||
*.7z filter=lfs diff=lfs merge=lfs -text
|
||||
*.bsp filter=lfs diff=lfs merge=lfs -text
|
||||
*.bz2 filter=lfs diff=lfs merge=lfs -text
|
||||
*.gem filter=lfs diff=lfs merge=lfs -text
|
||||
*.gz filter=lfs diff=lfs merge=lfs -text
|
||||
*.jar filter=lfs diff=lfs merge=lfs -text
|
||||
*.lz filter=lfs diff=lfs merge=lfs -text
|
||||
*.lzma filter=lfs diff=lfs merge=lfs -text
|
||||
*.obscpio filter=lfs diff=lfs merge=lfs -text
|
||||
*.oxt filter=lfs diff=lfs merge=lfs -text
|
||||
*.pdf filter=lfs diff=lfs merge=lfs -text
|
||||
*.png filter=lfs diff=lfs merge=lfs -text
|
||||
*.rpm filter=lfs diff=lfs merge=lfs -text
|
||||
*.tbz filter=lfs diff=lfs merge=lfs -text
|
||||
*.tbz2 filter=lfs diff=lfs merge=lfs -text
|
||||
*.tgz filter=lfs diff=lfs merge=lfs -text
|
||||
*.ttf filter=lfs diff=lfs merge=lfs -text
|
||||
*.txz filter=lfs diff=lfs merge=lfs -text
|
||||
*.whl filter=lfs diff=lfs merge=lfs -text
|
||||
*.xz filter=lfs diff=lfs merge=lfs -text
|
||||
*.zip filter=lfs diff=lfs merge=lfs -text
|
||||
*.zst filter=lfs diff=lfs merge=lfs -text
|
||||
1
.gitignore
vendored
Normal file
1
.gitignore
vendored
Normal file
@ -0,0 +1 @@
|
||||
.osc
|
||||
@ -0,0 +1,64 @@
|
||||
From bf50761dee8f0670542bcdc1fd9bff5cdb0448d4 Mon Sep 17 00:00:00 2001
|
||||
From: Fabian Vogt <fvogt@suse.de>
|
||||
Date: Thu, 28 Mar 2024 14:39:45 +0100
|
||||
Subject: [PATCH] BUG: Fix test_impossible_feature_enable failing without
|
||||
BASELINE_FEAT
|
||||
|
||||
If the build has no baseline features set, the test ended up setting
|
||||
e.g. NPY_ENABLE_CPU_FEATURES="ASIMDHP, None". This actually made the
|
||||
execution succeed, as the warning for decoding "None" overrode the
|
||||
error for the real feature. Fix the error handling there by removing
|
||||
the errorneous "return 0;", add a test for this, and avoid passing
|
||||
"None" by accident.
|
||||
---
|
||||
numpy/core/src/common/npy_cpu_features.c | 1 -
|
||||
numpy/core/tests/test_cpu_features.py | 14 ++++++++++++--
|
||||
2 files changed, 12 insertions(+), 3 deletions(-)
|
||||
|
||||
diff --git a/numpy/core/src/common/npy_cpu_features.c b/numpy/core/src/common/npy_cpu_features.c
|
||||
index bd149f8b4..f4d25cc50 100644
|
||||
--- a/numpy/core/src/common/npy_cpu_features.c
|
||||
+++ b/numpy/core/src/common/npy_cpu_features.c
|
||||
@@ -324,7 +324,6 @@ npy__cpu_check_env(int disable, const char *env) {
|
||||
) < 0) {
|
||||
return -1;
|
||||
}
|
||||
- return 0;
|
||||
}
|
||||
|
||||
#define NOTSUPP_BODY \
|
||||
diff --git a/numpy/core/tests/test_cpu_features.py b/numpy/core/tests/test_cpu_features.py
|
||||
index 48ab30a4a..88e4ad185 100644
|
||||
--- a/numpy/core/tests/test_cpu_features.py
|
||||
+++ b/numpy/core/tests/test_cpu_features.py
|
||||
@@ -308,8 +308,8 @@ def test_impossible_feature_enable(self):
|
||||
err_type = "RuntimeError"
|
||||
self._expect_error(msg, err_type)
|
||||
|
||||
- # Ensure that only the bad feature gets reported
|
||||
- feats = f"{bad_feature}, {self.BASELINE_FEAT}"
|
||||
+ # Ensure that it fails even when providing garbage in addition
|
||||
+ feats = f"{bad_feature}, Foobar"
|
||||
self.env['NPY_ENABLE_CPU_FEATURES'] = feats
|
||||
msg = (
|
||||
f"You cannot enable CPU features \\({bad_feature}\\), since they "
|
||||
@@ -317,6 +317,16 @@ def test_impossible_feature_enable(self):
|
||||
)
|
||||
self._expect_error(msg, err_type)
|
||||
|
||||
+ if self.BASELINE_FEAT is not None:
|
||||
+ # Ensure that only the bad feature gets reported
|
||||
+ feats = f"{bad_feature}, {self.BASELINE_FEAT}"
|
||||
+ self.env['NPY_ENABLE_CPU_FEATURES'] = feats
|
||||
+ msg = (
|
||||
+ f"You cannot enable CPU features \\({bad_feature}\\), since "
|
||||
+ "they are not supported by your machine."
|
||||
+ )
|
||||
+ self._expect_error(msg, err_type)
|
||||
+
|
||||
is_linux = sys.platform.startswith('linux')
|
||||
is_cygwin = sys.platform.startswith('cygwin')
|
||||
machine = platform.machine()
|
||||
--
|
||||
2.44.0
|
||||
|
||||
@ -0,0 +1,46 @@
|
||||
From 79e7c3c3262374de778145946b612135fb7cd581 Mon Sep 17 00:00:00 2001
|
||||
From: Fabian Vogt <fvogt@suse.de>
|
||||
Date: Thu, 28 Mar 2024 13:15:54 +0100
|
||||
Subject: [PATCH] feature module: Fix handling of multiple conflicts per
|
||||
attribute
|
||||
|
||||
- Attributes without match were never actually added to the list
|
||||
- Only the last conflict actually had an effect, earlier results were
|
||||
discarded
|
||||
---
|
||||
vendored-meson/meson/mesonbuild/modules/features/module.py | 7 ++-----
|
||||
1 file changed, 2 insertions(+), 5 deletions(-)
|
||||
|
||||
diff --git a/vendored-meson/meson/mesonbuild/modules/features/module.py b/vendored-meson/meson/mesonbuild/modules/features/module.py
|
||||
index 0be6af06c..a6f357b3f 100644
|
||||
--- a/vendored-meson/meson/mesonbuild/modules/features/module.py
|
||||
+++ b/vendored-meson/meson/mesonbuild/modules/features/module.py
|
||||
@@ -371,15 +371,12 @@ class Module(NewExtensionModule):
|
||||
values: List[ConflictAttr] = getattr(fet, attr)
|
||||
accumulate_values = test_result[attr] # type: ignore
|
||||
for conflict in values:
|
||||
- if not conflict.match:
|
||||
- accumulate_values.append(conflict.val)
|
||||
- continue
|
||||
conflict_vals: List[str] = []
|
||||
# select the acc items based on the match
|
||||
new_acc: List[str] = []
|
||||
for acc in accumulate_values:
|
||||
# not affected by the match so we keep it
|
||||
- if not conflict.match.match(acc):
|
||||
+ if not (conflict.match and conflict.match.match(acc)):
|
||||
new_acc.append(acc)
|
||||
continue
|
||||
# no filter so we totaly escape it
|
||||
@@ -396,7 +393,7 @@ class Module(NewExtensionModule):
|
||||
continue
|
||||
conflict_vals.append(conflict.mjoin.join(filter_val))
|
||||
new_acc.append(conflict.val + conflict.mjoin.join(conflict_vals))
|
||||
- test_result[attr] = new_acc # type: ignore
|
||||
+ accumulate_values = test_result[attr] = new_acc # type: ignore
|
||||
|
||||
test_args = compiler.has_multi_arguments
|
||||
args = test_result['args']
|
||||
--
|
||||
2.44.0
|
||||
|
||||
10
_constraints
Normal file
10
_constraints
Normal file
@ -0,0 +1,10 @@
|
||||
<constraints>
|
||||
<hardware>
|
||||
<physicalmemory>
|
||||
<size unit="G">8</size>
|
||||
</physicalmemory>
|
||||
<disk>
|
||||
<size unit="G">9</size>
|
||||
</disk>
|
||||
</hardware>
|
||||
</constraints>
|
||||
3
_multibuild
Normal file
3
_multibuild
Normal file
@ -0,0 +1,3 @@
|
||||
<multibuild>
|
||||
<package>gnu-hpc</package>
|
||||
</multibuild>
|
||||
53
fix-meson-multiple-python-versions.patch
Normal file
53
fix-meson-multiple-python-versions.patch
Normal file
@ -0,0 +1,53 @@
|
||||
From 59694be29a71b17ad1ce58c865a5524c50bfedee Mon Sep 17 00:00:00 2001
|
||||
From: Ralf Gommers <ralf.gommers@gmail.com>
|
||||
Date: Fri, 16 Feb 2024 22:18:43 +0100
|
||||
Subject: [PATCH] TST: fix Cython compile test which invokes `meson`
|
||||
|
||||
Closes gh-24956
|
||||
|
||||
[skip circle]
|
||||
---
|
||||
numpy/core/tests/test_cython.py | 14 ++++++++++++--
|
||||
1 file changed, 12 insertions(+), 2 deletions(-)
|
||||
|
||||
Index: numpy-1.26.4/numpy/core/tests/test_cython.py
|
||||
===================================================================
|
||||
--- numpy-1.26.4.orig/numpy/core/tests/test_cython.py
|
||||
+++ numpy-1.26.4/numpy/core/tests/test_cython.py
|
||||
@@ -37,6 +37,13 @@ def install_temp(tmpdir_factory):
|
||||
srcdir = os.path.join(os.path.dirname(__file__), 'examples', 'cython')
|
||||
build_dir = tmpdir_factory.mktemp("cython_test") / "build"
|
||||
os.makedirs(build_dir, exist_ok=True)
|
||||
+ # Ensure we use the correct Python interpreter even when `meson` is
|
||||
+ # installed in a different Python environment (see gh-24956)
|
||||
+ native_file = str(build_dir / 'interpreter-native-file.ini')
|
||||
+ with open(native_file, 'w') as f:
|
||||
+ f.write("[binaries]\n")
|
||||
+ f.write(f"python = '{sys.executable}'")
|
||||
+
|
||||
try:
|
||||
subprocess.check_call(["meson", "--version"])
|
||||
except FileNotFoundError:
|
||||
@@ -44,17 +51,20 @@ def install_temp(tmpdir_factory):
|
||||
if sys.platform == "win32":
|
||||
subprocess.check_call(["meson", "setup",
|
||||
"--buildtype=release",
|
||||
- "--vsenv", str(srcdir)],
|
||||
+ "--vsenv", "--native-file", native_file,
|
||||
+ str(srcdir)],
|
||||
cwd=build_dir,
|
||||
)
|
||||
else:
|
||||
- subprocess.check_call(["meson", "setup", str(srcdir)],
|
||||
+ subprocess.check_call(["meson", "setup",
|
||||
+ "--native-file", native_file, str(srcdir)],
|
||||
cwd=build_dir
|
||||
)
|
||||
subprocess.check_call(["meson", "compile", "-vv"], cwd=build_dir)
|
||||
|
||||
sys.path.append(str(build_dir))
|
||||
|
||||
+
|
||||
def test_is_timedelta64_object(install_temp):
|
||||
import checks
|
||||
|
||||
3
numpy-1.26.4.tar.gz
Normal file
3
numpy-1.26.4.tar.gz
Normal file
@ -0,0 +1,3 @@
|
||||
version https://git-lfs.github.com/spec/v1
|
||||
oid sha256:2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010
|
||||
size 15786129
|
||||
28
numpy-1.9.0-remove-__declspec.patch
Normal file
28
numpy-1.9.0-remove-__declspec.patch
Normal file
@ -0,0 +1,28 @@
|
||||
From: toddrme2178@gmail.com
|
||||
Date: 2014-09-09 04:45:00 +0000
|
||||
Subject: Remove windows-specific function
|
||||
Upstream: openSUSE Fix
|
||||
References:
|
||||
http://lists.opensuse.org/opensuse-packaging/2014-09/msg00004.html
|
||||
http://lists.opensuse.org/opensuse-packaging/2014-09/msg00005.html
|
||||
|
||||
__declspec(thread) is a windows-specific function that is causing
|
||||
spurious compiler warnings. These warnings can be safely ignored,
|
||||
but are being falsely flagged as serious problems that cause the
|
||||
build to fail. Since this is windows-specific, it can be
|
||||
safely removed.
|
||||
|
||||
|
||||
Index: numpy-1.24.0/numpy/core/setup_common.py
|
||||
===================================================================
|
||||
--- numpy-1.24.0.orig/numpy/core/setup_common.py
|
||||
+++ numpy-1.24.0/numpy/core/setup_common.py
|
||||
@@ -141,7 +141,7 @@ OPTIONAL_FILE_FUNCS = ["ftello", "fseeko
|
||||
OPTIONAL_MISC_FUNCS = ["backtrace", "madvise"]
|
||||
|
||||
# variable attributes tested via "int %s a" % attribute
|
||||
-OPTIONAL_VARIABLE_ATTRIBUTES = ["__thread", "__declspec(thread)"]
|
||||
+OPTIONAL_VARIABLE_ATTRIBUTES = ["__thread"]
|
||||
|
||||
# Subset of OPTIONAL_*_FUNCS which may already have HAVE_* defined by Python.h
|
||||
OPTIONAL_FUNCS_MAYBE = [
|
||||
3
numpy-2.0.0.tar.gz
Normal file
3
numpy-2.0.0.tar.gz
Normal file
@ -0,0 +1,3 @@
|
||||
version https://git-lfs.github.com/spec/v1
|
||||
oid sha256:cf5d1c9e6837f8af9f92b6bd3e86d513cdc11f60fd62185cc49ec7d1aba34864
|
||||
size 18326228
|
||||
3
numpy-2.1.0.tar.gz
Normal file
3
numpy-2.1.0.tar.gz
Normal file
@ -0,0 +1,3 @@
|
||||
version https://git-lfs.github.com/spec/v1
|
||||
oid sha256:7dc90da0081f7e1da49ec4e398ede6a8e9cc4f5ebe5f9e06b443ed889ee9aaa2
|
||||
size 18868922
|
||||
26
numpy-buildfix.patch
Normal file
26
numpy-buildfix.patch
Normal file
@ -0,0 +1,26 @@
|
||||
Index: numpy-1.19.5/numpy/distutils/command/autodist.py
|
||||
===================================================================
|
||||
--- numpy-1.19.5.orig/numpy/distutils/command/autodist.py
|
||||
+++ numpy-1.19.5/numpy/distutils/command/autodist.py
|
||||
@@ -51,7 +51,7 @@ def check_compiler_gcc(cmd):
|
||||
|
||||
cmd._check_compiler()
|
||||
body = textwrap.dedent("""
|
||||
- int
|
||||
+ void
|
||||
main()
|
||||
{
|
||||
#if (! defined __GNUC__)
|
||||
Index: numpy-1.19.5/numpy/distutils/command/install.py
|
||||
===================================================================
|
||||
--- numpy-1.19.5.orig/numpy/distutils/command/install.py
|
||||
+++ numpy-1.19.5/numpy/distutils/command/install.py
|
||||
@@ -67,7 +67,7 @@ class install(old_install):
|
||||
need_rewrite = False
|
||||
for l in f:
|
||||
l = l.rstrip()
|
||||
- if ' ' in l:
|
||||
+ if ' ' in l and '%dir ' not in l:
|
||||
need_rewrite = True
|
||||
l = '"%s"' % (l)
|
||||
lines.append(l)
|
||||
7
python-numpy-rpmlintrc
Normal file
7
python-numpy-rpmlintrc
Normal file
@ -0,0 +1,7 @@
|
||||
# These files are required for testing (and testing the package on a live system)
|
||||
addFilter("devel-file-in-non-devel-package .*numpy/f2py/tests/src/array_from_pyobj/wrapmodule.c")
|
||||
addFilter("devel-file-in-non-devel-package .*numpy/_core/tests/examples")
|
||||
addFilter("devel-file-in-non-devel-package .*numpy/_core/tests/data")
|
||||
addFilter("hidden-file-or-dir .*numpy/f2py/tests/src/assumed_shape/.f2py_f2cmap")
|
||||
addFilter("hidden-file-or-dir .*numpy/f2py/tests/src/f2cmap/.f2py_f2cmap")
|
||||
addFilter("zero-length .*numpy/core/__init__.pyi")
|
||||
3439
python-numpy.changes
Normal file
3439
python-numpy.changes
Normal file
File diff suppressed because it is too large
Load Diff
454
python-numpy.spec
Normal file
454
python-numpy.spec
Normal file
@ -0,0 +1,454 @@
|
||||
#
|
||||
# spec file for package python-numpy
|
||||
#
|
||||
# Copyright (c) 2024 SUSE LLC
|
||||
#
|
||||
# All modifications and additions to the file contributed by third parties
|
||||
# remain the property of their copyright owners, unless otherwise agreed
|
||||
# upon. The license for this file, and modifications and additions to the
|
||||
# file, is the same license as for the pristine package itself (unless the
|
||||
# license for the pristine package is not an Open Source License, in which
|
||||
# case the license is the MIT License). An "Open Source License" is a
|
||||
# license that conforms to the Open Source Definition (Version 1.9)
|
||||
# published by the Open Source Initiative.
|
||||
|
||||
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
||||
#
|
||||
|
||||
|
||||
%global flavor @BUILD_FLAVOR@%{nil}
|
||||
%define ver 2.1.0
|
||||
%define _ver 2_1_0
|
||||
%define pname python-numpy
|
||||
%define plainpython python
|
||||
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
|
||||
%if "%{flavor}" == ""
|
||||
%bcond_with hpc
|
||||
%bcond_with openblas
|
||||
%endif
|
||||
%if "%{flavor}" == "gnu-hpc"
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
%if "%{flavor}" == "gnu7-hpc"
|
||||
%define c_f_ver 7
|
||||
%bcond_without hpc
|
||||
%endif
|
||||
%if %{with hpc}
|
||||
%bcond_without openblas
|
||||
%endif
|
||||
%if 0%{?sle_version} == 120300
|
||||
%{?with_openblas:ExclusiveArch: do_not_build}
|
||||
%endif
|
||||
%{?with_hpc:%{hpc_requires}}
|
||||
#
|
||||
%if 0%{?suse_version} > 1500
|
||||
%bcond_without libalternatives
|
||||
%bcond_without cblas
|
||||
%else
|
||||
%bcond_with libalternatives
|
||||
%bcond_with cblas
|
||||
%endif
|
||||
#
|
||||
%bcond_with ringdisabled
|
||||
#
|
||||
%if %{without hpc}
|
||||
%define package_name %{pname}
|
||||
%define p_python_sitearch %{python_sitearch}
|
||||
%define p_prefix %{_prefix}
|
||||
%define p_bindir %{_bindir}
|
||||
%else
|
||||
%{!?compiler_family:%global compiler_family gnu}
|
||||
%{hpc_init -c %{compiler_family} %{?c_f_ver:-v %{c_f_ver}} %{?mpi_ver:-V %{mpi_ver}}}
|
||||
%define package_name %{hpc_package_name %{_ver}}
|
||||
%define p_python_sitearch %{hpc_python_sitearch}
|
||||
%define p_prefix %{hpc_prefix}
|
||||
%define p_bindir %{hpc_bindir}
|
||||
# Magic for OBS Staging. Only build the flavors required by
|
||||
# other packages in the ring.
|
||||
%if %{with ringdisabled}
|
||||
ExclusiveArch: do_not_build
|
||||
%endif
|
||||
%endif
|
||||
%{?sle15_python_module_pythons}
|
||||
Name: %{package_name}
|
||||
# set %%ver and %%_ver instead above
|
||||
Version: %{ver}
|
||||
Release: 0
|
||||
Summary: NumPy array processing for numbers, strings, records and objects
|
||||
License: BSD-3-Clause
|
||||
URL: http://www.numpy.org/
|
||||
Source: https://files.pythonhosted.org/packages/source/n/numpy/numpy-%{version}.tar.gz
|
||||
Source99: python-numpy-rpmlintrc
|
||||
# PATCH-FIX-OPENSUSE numpy-buildfix.patch -- openSUSE-specific build fixes
|
||||
Patch0: numpy-buildfix.patch
|
||||
BuildRequires: %{python_module Cython >= 3.0}
|
||||
BuildRequires: %{python_module base >= 3.10}
|
||||
BuildRequires: %{python_module devel}
|
||||
BuildRequires: %{python_module meson-python >= 0.15}
|
||||
BuildRequires: %{python_module pip}
|
||||
BuildRequires: %{python_module pyproject-metadata >= 0.7.1}
|
||||
BuildRequires: cmake
|
||||
%if 0%{?suse_version} <= 1600
|
||||
BuildRequires: gcc12
|
||||
BuildRequires: gcc12-c++
|
||||
%else
|
||||
BuildRequires: gcc
|
||||
BuildRequires: gcc-c++
|
||||
%endif
|
||||
BuildRequires: ninja >= 1.8.2
|
||||
BuildRequires: patchelf
|
||||
BuildRequires: python-rpm-macros >= 20210929
|
||||
BuildConflicts: gcc11 < 11.2
|
||||
%if 0%{?suse_version}
|
||||
BuildRequires: fdupes
|
||||
%endif
|
||||
# SECTION test requirements
|
||||
BuildRequires: %{python_module pytest >= 7.4.0}
|
||||
BuildRequires: %{python_module hypothesis >= 6.75.0}
|
||||
BuildRequires: %{python_module pytest-xdist}
|
||||
BuildRequires: %{python_module testsuite}
|
||||
BuildRequires: %{python_module typing-extensions >= 4.2.0}
|
||||
# /SECTION
|
||||
%if %{without hpc}
|
||||
# Last version which packaged %%{_bindir}/f2py without update-alternatives
|
||||
Conflicts: %{plainpython}-numpy <= 1.12.0
|
||||
%if 0%{?suse_version}
|
||||
BuildRequires: gcc-fortran
|
||||
%else
|
||||
BuildRequires: gcc-gfortran
|
||||
%endif
|
||||
%if %{with openblas}
|
||||
BuildRequires: openblas-devel > 0.3.20
|
||||
%else
|
||||
BuildRequires: blas-devel
|
||||
BuildRequires: lapack-devel
|
||||
%if %{with cblas}
|
||||
# openblas has significantly better performance for some operations
|
||||
BuildRequires: cblas-devel
|
||||
Recommends: libopenblas_pthreads0
|
||||
%endif
|
||||
%endif
|
||||
%if %{with libalternatives}
|
||||
BuildRequires: alts
|
||||
Requires: alts
|
||||
%else
|
||||
Requires(post): update-alternatives
|
||||
Requires(postun): update-alternatives
|
||||
%endif
|
||||
%else
|
||||
BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
|
||||
BuildRequires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
|
||||
%ifnarch %ix86 %arm
|
||||
BuildRequires: lua-lmod
|
||||
%endif
|
||||
BuildRequires: suse-hpc
|
||||
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc
|
||||
%endif
|
||||
%python_subpackages
|
||||
|
||||
%description
|
||||
NumPy is a general-purpose array-processing package designed to
|
||||
efficiently manipulate large multi-dimensional arrays of arbitrary
|
||||
records without sacrificing too much speed for small multi-dimensional
|
||||
arrays. NumPy is built on the Numeric code base and adds features
|
||||
introduced by numarray as well as an extended C-API and the ability to
|
||||
create arrays of arbitrary type which also makes NumPy suitable for
|
||||
interfacing with general-purpose data-base applications.
|
||||
|
||||
There are also basic facilities for discrete fourier transform,
|
||||
basic linear algebra and random number generation.
|
||||
|
||||
%{?with_hpc:%{hpc_python_master_package -L -a }}
|
||||
|
||||
%package devel
|
||||
Summary: Development files for numpy applications
|
||||
Requires: %{name} = %{version}
|
||||
Requires: python-devel
|
||||
Requires: %plainpython(abi) = %{python_version}
|
||||
%if %{without hpc}
|
||||
%if %{with openblas}
|
||||
Requires: openblas-devel
|
||||
%else
|
||||
Requires: blas-devel
|
||||
%if %{with cblas}
|
||||
Requires: cblas-devel
|
||||
%endif
|
||||
Requires: lapack-devel
|
||||
%endif
|
||||
%else
|
||||
Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
|
||||
%{hpc_requires_devel}
|
||||
%endif
|
||||
|
||||
%description devel
|
||||
This package contains files for developing applications using numpy.
|
||||
|
||||
%{?with_hpc:%{hpc_python_master_package devel -a }}
|
||||
|
||||
%prep
|
||||
%autosetup -p1 -n numpy-%{version}
|
||||
# Fix non-executable scripts
|
||||
sed -i '1{/^#!/d}'\
|
||||
numpy/distutils/{conv_template,cpuinfo,from_template,system_info}.py \
|
||||
numpy/f2py/{__init__,cfuncs,diagnose,crackfortran,f2py2e,rules}.py \
|
||||
numpy/random/_examples/cython/extending{,_distributions}.pyx \
|
||||
numpy/testing/print_coercion_tables.py
|
||||
chmod -x \
|
||||
numpy/f2py/{crackfortran,f2py2e,rules}.py \
|
||||
numpy/testing/print_coercion_tables.py
|
||||
|
||||
# force cythonization
|
||||
rm -f PKG-INFO
|
||||
|
||||
%build
|
||||
%define _lto_cflags %{nil}
|
||||
%if %{with hpc}
|
||||
%hpc_setup
|
||||
module load openblas
|
||||
export CFLAGS="$(pkg-config --cflags openblas) %{optflags} -fno-strict-aliasing" LIBS="$(pkg-config --libs openblas)"
|
||||
cat > site.cfg <<EOF
|
||||
[openblas]
|
||||
libraries = openblas
|
||||
library_dirs = $OPENBLAS_LIB
|
||||
include_dirs = $OPENBLAS_INC
|
||||
EOF
|
||||
%else
|
||||
export CFLAGS="%{optflags} -fno-strict-aliasing"
|
||||
%endif
|
||||
%if 0%{?suse_version} <= 1600
|
||||
export CC=gcc-12
|
||||
export CXX=g++-12
|
||||
%endif
|
||||
|
||||
%pyproject_wheel
|
||||
|
||||
%install
|
||||
%{?with_hpc:%hpc_setup}
|
||||
%{?with_hpc:module load openblas}
|
||||
|
||||
%pyproject_install --prefix %{p_prefix} --root %{buildroot}
|
||||
|
||||
%if !%{with hpc}
|
||||
%python_clone -a %{buildroot}%{_bindir}/f2py
|
||||
%python_clone -a %{buildroot}%{_bindir}/numpy-config
|
||||
%endif
|
||||
|
||||
%if 0%{?suse_version}
|
||||
%fdupes %{buildroot}%{p_prefix}
|
||||
%endif
|
||||
|
||||
%if %{with hpc}
|
||||
|
||||
%define hpc_module_pname ${python_flavor}-numpy
|
||||
%{python_expand # Don't package testsuite
|
||||
python_flavor=`cat _current_flavor`
|
||||
sitesearch_path=`$python -c "import sysconfig as s; print(s.get_paths(vars={'platbase':'%{hpc_prefix}','base':'%{hpc_prefix}'}).get('platlib'))"`
|
||||
rm -rf %{buildroot}${sitesearch_path}/numpy/{,_core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests
|
||||
%hpc_write_modules_files
|
||||
#%%Module1.0#####################################################################
|
||||
|
||||
proc ModulesHelp { } {
|
||||
|
||||
puts stderr " "
|
||||
puts stderr "This module loads the %{pname} library built with the %{compiler_family} compiler"
|
||||
puts stderr "toolchain."
|
||||
puts stderr "\nVersion %{version}\n"
|
||||
|
||||
}
|
||||
module-whatis "Name: %{pname} built with %{compiler_family} compiler"
|
||||
module-whatis "Version: %{version}"
|
||||
module-whatis "Category: python module"
|
||||
module-whatis "Description: %{SUMMARY:0}"
|
||||
module-whatis "URL %{url}"
|
||||
|
||||
set version %{version}
|
||||
|
||||
if [ expr [ module-info mode load ] || [module-info mode display ] ] {
|
||||
if { ![is-loaded intel] && ![is-loaded openblas] } {
|
||||
module load openblas
|
||||
}
|
||||
}
|
||||
|
||||
prepend-path PATH %{hpc_bindir}
|
||||
prepend-path PYTHONPATH ${sitesearch_path}
|
||||
|
||||
setenv %{hpc_upcase_trans_hyph %{pname}}_DIR %{hpc_prefix}
|
||||
setenv %{hpc_upcase_trans_hyph %{pname}}_BIN %{hpc_bindir}
|
||||
|
||||
family "NumPy"
|
||||
EOF
|
||||
}
|
||||
|
||||
%endif
|
||||
|
||||
%check
|
||||
# https://numpy.org/doc/stable/dev/development_environment.html#running-tests
|
||||
%if %{without hpc}
|
||||
|
||||
mkdir -p testing
|
||||
cp pytest.ini testing/
|
||||
pushd testing
|
||||
%python_flavored_alternatives
|
||||
%if %{with libalternatives}
|
||||
%{python_expand #
|
||||
for b in f2py numpy-config; do
|
||||
ln -s %{buildroot}%{_bindir}/$b-%{$python_bin_suffix} build/flavorbin/$b
|
||||
done
|
||||
}
|
||||
%endif
|
||||
|
||||
# flaky tests
|
||||
test_failok+=" or test_structured_object_indexing"
|
||||
test_failok+=" or test_structured_object_item_setting"
|
||||
# flaky due to memory consumption
|
||||
test_failok+=" or test_big_arrays"
|
||||
# gh#numpy/numpy#22825
|
||||
test_failok+=" or TestPrintOptions"
|
||||
# gh#numpy/numpy#22835
|
||||
test_failok+=" or test_keepdims_out"
|
||||
# boo#1148173 gh#numpy/numpy#14438
|
||||
%ifarch ppc64 ppc64le
|
||||
test_failok+=" or test_generalized_sq"
|
||||
# situation with IBM and double numbers is ... complicated
|
||||
# gh#numpy/numpy#21094
|
||||
test_failok+=" or test_ppc64_ibm_double_double128"
|
||||
%endif
|
||||
# these tests fail on big endian gh#numpy/numpy#11831
|
||||
%ifarch s390x ppc ppc64
|
||||
test_failok+=" or TestFReturnCharacter"
|
||||
%endif
|
||||
# missing instruction set
|
||||
%ifarch s390x
|
||||
test_failok+=" or test_truncate_f32"
|
||||
%endif
|
||||
%ifarch %{ix86}
|
||||
# (arm 32-bit seems okay here)
|
||||
# gh#numpy/numpy#18387
|
||||
test_failok+=" or test_pareto"
|
||||
# gh#numpy/numpy#18388
|
||||
test_failok+=" or test_float_remainder_overflow"
|
||||
%endif
|
||||
%ifarch %{ix86} %{arm32}
|
||||
# too much memory for 32bit
|
||||
test_failok+=" or test_identityless_reduction_huge_array"
|
||||
test_failok+=" or test_huge_vectordot"
|
||||
# invalid int type for 32bit
|
||||
test_failok+=" or (test_kind and test_quad_precision)"
|
||||
test_failok+=" or (test_kind and test_int)"
|
||||
test_failok+=" or (test_kind and test_real)"
|
||||
test_failok+=" or (test_multinomial_pvals_float32)"
|
||||
%endif
|
||||
%ifarch %{arm}
|
||||
# https://github.com/numpy/numpy/issues/24001
|
||||
test_failok+=" or (test_cpu_features and test_features)"
|
||||
test_failok+=" or (test_umath and test_unary_spurious_fpexception)"
|
||||
%endif
|
||||
%ifarch riscv64
|
||||
# These tests fail due to non-portable assumptions about the signbit of NaN
|
||||
# gh#numpy/numpy#8213
|
||||
test_failok+=" or (test_umath and test_fpclass)"
|
||||
test_failok+=" or (test_numeric and TestBoolCmp and test_float)"
|
||||
test_failok+=" or (test_umath and test_fp_noncontiguous)"
|
||||
%endif
|
||||
# The meson command is always on the primary python and wants to import numpy from there
|
||||
test_failok+=" or test_limited_api"
|
||||
|
||||
echo "
|
||||
import sys
|
||||
import numpy
|
||||
r = numpy.test(label='full', verbose=2,
|
||||
extra_argv=['-v', '-n', 'auto', '-k'] + sys.argv[1:])
|
||||
sys.exit(0 if r else 1)
|
||||
" > runobstest.py
|
||||
|
||||
%{python_expand # for all python3 flavors
|
||||
export PYTHONPATH=%{buildroot}%{$python_sitearch}
|
||||
export PYTHONDONTWRITEBYTECODE=1
|
||||
[ -n "$test_failok" ] && $python runobstest.py "${test_failok:4}" ||:
|
||||
# test_new_policy: duplicates test runs and output and does not follow our deselection
|
||||
$python runobstest.py "not (test_new_policy ${test_failok} or slow)"
|
||||
}
|
||||
|
||||
popd
|
||||
%endif
|
||||
|
||||
%if %{without hpc}
|
||||
%pre
|
||||
# If libalternatives is used: Removing old update-alternatives entries.
|
||||
%python_libalternatives_reset_alternative f2py
|
||||
|
||||
%post
|
||||
%python_install_alternative f2py numpy-config
|
||||
|
||||
%postun
|
||||
%python_uninstall_alternative f2py
|
||||
%endif
|
||||
|
||||
%files %{python_files}
|
||||
%doc README.md THANKS.txt
|
||||
%license LICENSE.txt
|
||||
%if %{without hpc}
|
||||
%python_alternative %{_bindir}/f2py
|
||||
%python_alternative %{_bindir}/numpy-config
|
||||
%{python_sitearch}/numpy/
|
||||
%{python_sitearch}/numpy-%{version}.dist-info
|
||||
%exclude %{python_sitearch}/numpy/_core/include
|
||||
%exclude %{python_sitearch}/numpy/_core/lib/libnpymath.a
|
||||
%exclude %{python_sitearch}/numpy/_core/lib/pkgconfig/numpy.pc
|
||||
%exclude %{python_sitearch}/numpy/distutils/mingw/*.c
|
||||
%exclude %{python_sitearch}/numpy/distutils/checks/*.c
|
||||
%exclude %{python_sitearch}/numpy/f2py/src/
|
||||
%exclude %{python_sitearch}/numpy/random/lib/libnpyrandom.a
|
||||
%else
|
||||
%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
|
||||
%{p_bindir}/f2py
|
||||
%{p_bindir}/numpy-config
|
||||
%else
|
||||
%exclude %{p_bindir}/f2py
|
||||
%exclude %{p_bindir}/numpy-config
|
||||
%endif
|
||||
%{p_python_sitearch}/numpy/
|
||||
%{p_python_sitearch}/numpy-%{version}.dist-info
|
||||
%exclude %{p_python_sitearch}/numpy/_core/include/
|
||||
%exclude %{p_python_sitearch}/numpy/_core/lib/libnpymath.a
|
||||
%exclude %{p_python_sitearch}/numpy/_core/lib/pkgconfig/numpy.pc
|
||||
%exclude %{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
|
||||
%exclude %{p_python_sitearch}/numpy/distutils/mingw/*.c
|
||||
%exclude %{p_python_sitearch}/numpy/distutils/checks/*.c
|
||||
%exclude %{p_python_sitearch}/numpy/f2py/src/
|
||||
%endif
|
||||
|
||||
%if %{with hpc}
|
||||
%define hpc_module_pname %{python_flavor}-numpy
|
||||
%{hpc_modules_files}
|
||||
%{hpc_dirs}
|
||||
%dir %{hpc_bindir}
|
||||
%dir %{hpc_libdir}/python%{hpc_python_version}
|
||||
%dir %{p_python_sitearch}
|
||||
%endif
|
||||
|
||||
%files %{python_files devel}
|
||||
%license LICENSE.txt
|
||||
%if %{without hpc}
|
||||
%{python_sitearch}/numpy/_core/include/
|
||||
%if 0%{python_version_nodots} < 312
|
||||
%{python_sitearch}/numpy/distutils/mingw/*.c
|
||||
%{python_sitearch}/numpy/distutils/checks/*.c
|
||||
%endif
|
||||
%{python_sitearch}/numpy/f2py/src/
|
||||
%{python_sitearch}/numpy/_core/lib/libnpymath.a
|
||||
%{python_sitearch}/numpy/_core/lib/pkgconfig/numpy.pc
|
||||
%{python_sitearch}/numpy/random/lib/libnpyrandom.a
|
||||
%else
|
||||
%{p_python_sitearch}/numpy/_core/include/
|
||||
%{p_python_sitearch}/numpy/_core/lib/pkgconfig/numpy.pc
|
||||
%{p_python_sitearch}/numpy/_core/lib/libnpymath.a
|
||||
%{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
|
||||
%if 0%{python_version_nodots} < 312
|
||||
%{p_python_sitearch}/numpy/distutils/mingw/*.c
|
||||
%{p_python_sitearch}/numpy/distutils/checks/*.c
|
||||
%endif
|
||||
%{p_python_sitearch}/numpy/f2py/src/
|
||||
%endif
|
||||
|
||||
%changelog
|
||||
Loading…
Reference in New Issue
Block a user