Accepting request 1046448 from devel:languages:python:numeric

OBS-URL: https://build.opensuse.org/request/show/1046448
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-numpy?expand=0&rev=111

numpy-1.23.4.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:ed2cc92af0efad20198638c69bb0fc2870a58dabfba6eb722c933b48556c686c
-size 10728765

numpy-1.24.1.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2386da9a471cc00a1f47845e27d916d5ec5346ae9696e01a8a34760858fe9dd2
+size 10903184

numpy-1.9.0-remove-__declspec.patch

@@ -13,14 +13,16 @@ build to fail.  Since this is windows-specific, it can be
 safely removed.
 
 
---- a/numpy/core/setup_common.py
+Index: numpy-1.24.0/numpy/core/setup_common.py
-+++ b/numpy/core/setup_common.py
+===================================================================
-@@ -226,7 +226,7 @@ OPTIONAL_FUNCTION_ATTRIBUTES = [('__attr
+--- numpy-1.24.0.orig/numpy/core/setup_common.py
-                                 ]
++++ numpy-1.24.0/numpy/core/setup_common.py
+@@ -141,7 +141,7 @@ OPTIONAL_FILE_FUNCS = ["ftello", "fseeko
+ OPTIONAL_MISC_FUNCS = ["backtrace", "madvise"]
  
  # variable attributes tested via "int %s a" % attribute
 -OPTIONAL_VARIABLE_ATTRIBUTES = ["__thread", "__declspec(thread)"]
 +OPTIONAL_VARIABLE_ATTRIBUTES = ["__thread"]
  
- # Subset of OPTIONAL_STDFUNCS which may already have HAVE_* defined by Python.h
+ # Subset of OPTIONAL_*_FUNCS which may already have HAVE_* defined by Python.h
- OPTIONAL_STDFUNCS_MAYBE = [
+ OPTIONAL_FUNCS_MAYBE = [

python-numpy-rpmlintrc

@@ -1,3 +1,6 @@
-# This file is required for testing
+# These files are required for testing (and testing the package on a live system)
-addFilter("devel-file-in-non-devel-package.*/usr/lib.*/python.*/site-packages/numpy/f2py/tests/src/array_from_pyobj/wrapmodule.c")
+addFilter("devel-file-in-non-devel-package.*numpy/f2py/tests/src/array_from_pyobj/wrapmodule.c")
+addFilter("devel-file-in-non-devel-package.*numpy/core/tests/examples")
+addFilter("devel-file-in-non-devel-package.*numpy/core/tests/data")
 addFilter("hidden-file-or-dir .*/numpy/f2py/tests/src/assumed_shape/.f2py_f2cmap")
+addFilter("hidden-file-or-dir .*/numpy/f2py/tests/src/f2cmap/.f2py_f2cmap")

python-numpy.changes

@@ -1,3 +1,61 @@
+-------------------------------------------------------------------
+Mon Jan  2 19:31:48 UTC 2023 - Ben Greiner <code@bnavigator.de>
+
+- Update to 1.24.1
+  * NumPy 1.24.1 is a maintenance release that fixes bugs and
+    regressions discovered after the 1.24.0 release. The Python
+    versions supported by this release are 3.8-3.11.
+  * #22820: BLD: add workaround in setup.py for newer setuptools
+  * #22830: BLD: CIRRUS_TAG redux
+  * #22831: DOC: fix a couple typos in 1.23 notes
+  * #22832: BUG: Fix refcounting errors found using pytest-leaks
+  * #22834: BUG, SIMD: Fix invalid value encountered in several
+    ufuncs
+  * #22837: TST: ignore more np.distutils.log imports
+  * #22839: BUG: Do not use getdata() in np.ma.masked_invalid
+  * #22847: BUG: Ensure correct behavior for rows ending in
+    delimiter in...
+  * #22848: BUG, SIMD: Fix the bitmask of the boolean comparison
+  * #22857: BLD: Help raspian arm + clang 13 about
+    __builtin_mul_overflow
+  * #22858: API: Ensure a full mask is returned for masked_invalid
+  * #22866: BUG: Polynomials now copy properly (#22669)
+  * #22867: BUG, SIMD: Fix memory overlap in ufunc comparison loops
+  * #22868: BUG: Fortify string casts against floating point
+    warnings
+  * #22875: TST: Ignore nan-warnings in randomized out tests
+  * #22883: MAINT: restore npymath implementations needed for
+    freebsd
+  * #22884: BUG: Fix integer overflow in in1d for mixed integer
+    dtypes #22877
+  * #22887: BUG: Use whole file for encoding checks with
+    charset_normalizer.
+- Drop numpy-distutils-ignore.patch fixed upstream
+
+-------------------------------------------------------------------
+Mon Dec 19 13:36:35 UTC 2022 - Ben Greiner <code@bnavigator.de>
+
+- Update to 1.24.0
+  * The NumPy 1.24.0 release continues the ongoing work to improve
+    the handling and promotion of dtypes, increase the execution
+    speed, and clarify the documentation. There are also a large
+    number of new and expired deprecations due to changes in
+    promotion and cleanups. This might be called a deprecation
+    release. Highlights are:
+    - Many new deprecations, check them out.
+    - Many expired deprecations,
+    - New F2PY features and fixes.
+    - New “dtype” and “casting” keywords for stacking functions.
+  * For a detailed description see
+    https://numpy.org/doc/stable/release/1.24.0-notes.html
+- Add numpy-distutils-ignore.patch gh#numpy/numpy#22828
+- Fix running the tests: Actually fail on errors
+
+-------------------------------------------------------------------
+Wed Dec 14 20:59:50 UTC 2022 - Ben Greiner <code@bnavigator.de>
+
+- Support builds without any primary python3 package (:backports)
+
 -------------------------------------------------------------------
 Thu Oct 20 13:48:08 UTC 2022 - Ben Greiner <code@bnavigator.de>
 

python-numpy.spec

@@ -1,7 +1,7 @@
 #
 # spec file
 #
-# Copyright (c) 2022 SUSE LLC
+# Copyright (c) 2023 SUSE LLC
 #
 # All modifications and additions to the file contributed by third parties
 # remain the property of their copyright owners, unless otherwise agreed
@@ -17,9 +17,10 @@
 
 
 %global flavor @BUILD_FLAVOR@%{nil}
-%define ver 1.23.4
+%define ver 1.24.1
-%define _ver 1_23_4
+%define _ver 1_24_1
 %define pname python-numpy
+%define plainpython python
 %define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
 %if "%{flavor}" == ""
  %bcond_with hpc
@@ -85,22 +86,23 @@ Patch1:         numpy-1.9.0-remove-__declspec.patch
 BuildRequires:  %{python_module Cython >= 0.29.30}
 BuildRequires:  %{python_module base >= 3.8}
 BuildRequires:  %{python_module devel}
-BuildRequires:  %{python_module hypothesis >= 6.24.1}
-BuildRequires:  %{python_module pytest >= 6.2.5}
-BuildRequires:  %{python_module pytest-xdist}
 BuildRequires:  %{python_module setuptools >= 60.0.0}
-BuildRequires:  %{python_module testsuite}
 BuildRequires:  gcc-c++
 BuildRequires:  python-rpm-macros >= 20210929
 BuildConflicts: gcc11 < 11.2
 %if 0%{?suse_version}
 BuildRequires:  fdupes
 %endif
+# SECTION test requirements
+BuildRequires:  %{python_module pytest >= 6.2.5}
+BuildRequires:  %{python_module hypothesis >= 6.24.1}
+BuildRequires:  %{python_module pytest-xdist}
+BuildRequires:  %{python_module testsuite}
+BuildRequires:  %{python_module typing-extensions >= 4.2.0}
+# /SECTION
 %if %{without hpc}
 # Last version which packaged %%{_bindir}/f2py without update-alternatives
-# Protect it from substitution
+Conflicts:      %{plainpython}-numpy <= 1.12.0
-%define oldpy_numpy python-numpy
-Conflicts:      %{oldpy_numpy} <= 1.12.0
  %if 0%{?suse_version}
 BuildRequires:  gcc-fortran
  %else
@@ -149,6 +151,7 @@ basic linear algebra and random number generation.
 Summary:        Development files for numpy applications
 Requires:       %{name} = %{version}
 Requires:       python-devel
+Requires:       %plainpython(abi) = %{python_version}
 %if %{without hpc}
 %if %{with openblas}
 Requires:       openblas-devel
@@ -202,6 +205,9 @@ export CFLAGS="%{optflags} -fno-strict-aliasing"
 
 %if !%{with hpc}
 %python_clone -a %{buildroot}%{_bindir}/f2py
+%python_expand rm %{buildroot}%{$python_sitearch}/numpy/core/include/numpy/.doxyfile
+%else
+rm %{buildroot}%{p_python_sitearch}/numpy/core/include/numpy/.doxyfile
 %endif
 
 %if 0%{?suse_version}
@@ -253,6 +259,7 @@ EOF
 %endif
 
 %check
+# https://numpy.org/doc/stable/dev/development_environment.html#running-tests
 %if %{without hpc}
 export PATH="%{buildroot}%{_bindir}:$PATH"
 
@@ -263,6 +270,12 @@ pushd testing
 # flaky tests
 test_failok+=" or test_structured_object_indexing"
 test_failok+=" or test_structured_object_item_setting"
+# flaky due to memory consumption
+test_failok+=" or test_big_arrays"
+# gh#numpy/numpy#22825
+test_failok+=" or TestPrintOptions"
+# gh#numpy/numpy#22835
+test_failok+=" or test_keepdims_out"
 # boo#1148173 gh#numpy/numpy#14438
 %ifarch ppc64 ppc64le
 test_failok+=" or test_generalized_sq"
@@ -272,6 +285,10 @@ test_failok+=" or test_generalized_sq"
 test_failok+=" or TestF77ReturnCharacter"
 test_failok+=" or TestF90ReturnCharacter"
 %endif
+# missing instruction set
+%ifarch s390x
+test_failok+=" or test_truncate_f32"
+%endif
 %ifarch %{ix86}
 # (arm 32-bit seems okay here)
 # gh#numpy/numpy#18387
@@ -279,6 +296,13 @@ test_failok+=" or test_pareto"
 # gh#numpy/numpy#18388
 test_failok+=" or test_float_remainder_overflow"
 %endif
+%ifarch %{ix86} %{arm32}
+# too much memory for 32bit
+test_failok+=" or test_identityless_reduction_huge_array"
+test_failok+=" or test_huge_vectordot"
+# invalid int type for 32bit
+test_failok+=" or (test_kind and test_all)"
+%endif
 %ifarch riscv64
 # These tests fail due to non-portable assumptions about the signbit of NaN
 # gh#numpy/numpy#8213
@@ -289,15 +313,17 @@ test_failok+=" or test_float"
 echo "
 import sys
 import numpy
-numpy.test(label='full', verbose=2,
+r = numpy.test(label='full', verbose=2,
                extra_argv=['-v', '-n', 'auto', '-k'] + sys.argv[1:])
+sys.exit(0 if r else 1)
 " > runobstest.py
 
 %{python_expand # for all python3 flavors
 export PYTHONPATH=%{buildroot}%{$python_sitearch}
 export PYTHONDONTWRITEBYTECODE=1
 [ -n "$test_failok" ] && $python runobstest.py "${test_failok:4}" ||:
-$python runobstest.py "not (${test_failok:4})"
+# test_new_policy: duplicates test runs and output and does not follow our deselection
+$python runobstest.py "not (test_new_policy ${test_failok})"
 }
 
 popd
@@ -321,6 +347,8 @@ popd
 %python_alternative %{_bindir}/f2py
 %if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
 %{_bindir}/f2py3
+%else
+%exclude %{_bindir}/f2py3
 %endif
 %{_bindir}/f2py%{python_bin_suffix}
 %{python_sitearch}/numpy/
@@ -336,6 +364,9 @@ popd
 %if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
 %{p_bindir}/f2py
 %{p_bindir}/f2py3
+%else
+%exclude %{p_bindir}/f2py
+%exclude %{p_bindir}/f2py3
 %endif
 %{p_bindir}/f2py%{python_bin_suffix}
 %{p_python_sitearch}/numpy/