Matej Cepl
916ef9262c
- Update to version 1.20.1
* The distutils bug that caused problems with downstream projects
is fixed.
* The random.shuffle regression is fixed.
- Higlights for 1.20.0:
* Annotations for NumPy functions. This work is ongoing and
improvements can be expected pending feedback from users.
* Wider use of SIMD to increase execution speed of ufuncs. Much
work has been done in introducing universal functions that
will ease use of modern features across different hardware
platforms. This work is ongoing.
* Preliminary work in changing the dtype and casting
implementations in order to provide an easier path to
extending dtypes. This work is ongoing but enough has been
done to allow experimentation and feedback.
* Extensive documentation improvements comprising some 185 PR
merges. This work is ongoing and part of the larger project to
improve NumPy’s online presence and usefulness to new users.
* Further cleanups related to removing Python 2.7. This improves
code readability and removes technical debt.
* Preliminary support for the upcoming Cython 3.0.
- Full release notes at
https://numpy.org/doc/stable/release/1.20.0-notes.html
- Now requires Python >= 3.7 (NEP 29)
* Drop fix-py34-tests.patch
* Skip python36 build
- Drop s390x.patch -- The patch was applied for all big endian
architectures. Mark those tests appropriately in the check
section instead. gh#numpy/numpy#11831
- Skip two tests on ix86: gh#numpy/numpy#18387 gh#numpy/numpy#18388
OBS-URL: https://build.opensuse.org/request/show/870967
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-numpy?expand=0&rev=84
353 lines
11 KiB
RPMSpec
353 lines
11 KiB
RPMSpec
#
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# spec file for package python-numpy
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#
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# Copyright (c) 2021 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%global flavor @BUILD_FLAVOR@%{nil}
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%define ver 1.20.1
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%define _ver 1_20_1
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%define pname python-numpy
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%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
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%if "%{flavor}" == ""
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%bcond_with hpc
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%bcond_with openblas
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%endif
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%if "%{flavor}" == "gnu-hpc"
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%bcond_without hpc
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%endif
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%if "%{flavor}" == "gnu7-hpc"
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%define c_f_ver 7
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%bcond_without hpc
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%endif
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%if %{with hpc}
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%bcond_without openblas
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%endif
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%if 0%{?sle_version} == 120300
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%{?with_openblas:ExclusiveArch: do_not_build}
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%endif
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%ifarch s390 s390x
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%{?with_openblas:ExclusiveArch: do_not_build}
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%endif
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%{?!python_module:%define python_module() python-%{**} python3-%{**}}
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%define skip_python2 1
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%define skip_python36 1
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%{?with_hpc:%{hpc_requires}}
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%bcond_with ringdisabled
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%if %{without hpc}
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%define package_name %{pname}
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%define p_python_sitearch %{python_sitearch}
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%define p_prefix %{_prefix}
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%define p_bindir %{_bindir}
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%else
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%{!?compiler_family:%global compiler_family gnu}
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%{hpc_init -c %{compiler_family} %{?c_f_ver:-v %{c_f_ver}} %{?mpi_ver:-V %{mpi_ver}}}
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%define package_name %{hpc_package_name %{_ver}}
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%define p_python_sitearch %{hpc_python_sitearch}
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%define p_prefix %{hpc_prefix}
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%define p_bindir %{hpc_bindir}
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# Magic for OBS Staging. Only build the flavors required by
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# other packages in the ring.
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%if %{with ringdisabled}
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ExclusiveArch: do_not_build
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%endif
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%endif
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Name: %{package_name}
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# set %%ver and %%_ver instead above
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Version: %ver
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Release: 0
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Summary: NumPy array processing for numbers, strings, records and objects
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License: BSD-3-Clause
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URL: http://www.numpy.org/
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Source: https://files.pythonhosted.org/packages/source/n/numpy/numpy-%{version}.zip
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Source99: python-numpy-rpmlintrc
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# PATCH-FIX-OPENSUSE numpy-buildfix.patch -- openSUSE-specific build fixes
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Patch0: numpy-buildfix.patch
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# PATCH-FIX-OPENSUSE numpy-1.9.0-remove-__declspec.patch -- fix for spurious compiler warnings that cause build failure
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Patch1: numpy-1.9.0-remove-__declspec.patch
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BuildRequires: %{python_module Cython >= 0.29.21}
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BuildRequires: %{python_module base >= 3.7}
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BuildRequires: %{python_module devel}
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BuildRequires: %{python_module hypothesis >= 5.12.0}
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BuildRequires: %{python_module pytest >= 5.4.2}
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BuildRequires: %{python_module pytest-xdist}
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BuildRequires: %{python_module setuptools}
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BuildRequires: %{python_module testsuite}
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BuildRequires: python-rpm-macros
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BuildRequires: unzip
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%if 0%{?suse_version}
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BuildRequires: fdupes
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%endif
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%if %{without hpc}
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%if 0%{?suse_version}
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BuildRequires: gcc-fortran
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%else
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BuildRequires: gcc-gfortran
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%endif
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%if %{with openblas}
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BuildRequires: openblas-devel > 0.3.4
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%else
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BuildRequires: blas-devel
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BuildRequires: cblas-devel
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BuildRequires: lapack-devel
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# openblas has significantly better performance for some operations
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Recommends: libopenblas_pthreads0
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%endif
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# Last version which packaged %%{_bindir}/f2py without update-alternatives
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# Protect it from substitution
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%define oldpy_numpy python-numpy
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Conflicts: %{oldpy_numpy} <= 1.12.0
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%else
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BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
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BuildRequires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
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BuildRequires: lua-lmod
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BuildRequires: suse-hpc
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Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc
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Requires(post): update-alternatives
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Requires(postun): update-alternatives
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%endif
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%python_subpackages
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%description
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NumPy is a general-purpose array-processing package designed to
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efficiently manipulate large multi-dimensional arrays of arbitrary
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records without sacrificing too much speed for small multi-dimensional
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arrays. NumPy is built on the Numeric code base and adds features
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introduced by numarray as well as an extended C-API and the ability to
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create arrays of arbitrary type which also makes NumPy suitable for
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interfacing with general-purpose data-base applications.
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There are also basic facilities for discrete fourier transform,
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basic linear algebra and random number generation.
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%{?with_hpc:%{hpc_python_master_package -L -a }}
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%package devel
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Summary: Development files for numpy applications
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Requires: %{name} = %{version}
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Requires: python-devel
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%if %{without hpc}
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%if %{with openblas}
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Requires: openblas-devel
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%else
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Requires: blas-devel
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Requires: cblas-devel
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Requires: lapack-devel
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%endif
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%else
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Requires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
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%{hpc_requires_devel}
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%endif
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%description devel
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This package contains files for developing applications using numpy.
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%{?with_hpc:%{hpc_python_master_package devel -a }}
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%prep
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%setup -q -n numpy-%{version}
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%patch0 -p1
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%patch1 -p1
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# Fix non-executable scripts
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sed -i '1s/^#!.*$//' numpy/{compat/setup,random/_examples/cython/setup,distutils/{conv_template,cpuinfo,exec_command,from_template,setup,system_info},f2py/{__init__,auxfuncs,capi_maps,cb_rules,cfuncs,common_rules,crackfortran,diagnose,f2py2e,f90mod_rules,func2subr,rules,setup,use_rules},ma/{setup,bench},matrixlib/setup,setup,testing/{print_coercion_tables,setup}}.py
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sed -i '1s/^#!.*$//' numpy/random/_examples/cython/*.pyx
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# force cythonization
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rm PKG-INFO
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%build
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%define _lto_cflags %{nil}
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%if %{with hpc}
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%hpc_setup
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module load openblas
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export CFLAGS="$(pkg-config --cflags openblas) %{optflags} -fno-strict-aliasing" LIBS="$(pkg-config --libs openblas)"
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cat > site.cfg <<EOF
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[openblas]
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libraries = openblas
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library_dirs = $OPENBLAS_LIB
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include_dirs = $OPENBLAS_INC
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EOF
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%else
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export CFLAGS="%{optflags} -fno-strict-aliasing"
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%endif
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%python_build
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%install
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%{?with_hpc:%hpc_setup}
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%{?with_hpc:module load openblas}
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%python_exec setup.py install --prefix=%{p_prefix} --root=%{buildroot}
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%if !%{with hpc}
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%python_clone -a %{buildroot}%{_bindir}/f2py
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%endif
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%if 0%{?suse_version}
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%fdupes %{buildroot}%{p_prefix}
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%endif
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%if %{with hpc}
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%define hpc_module_pname ${python_flavor}-numpy
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%{python_expand # Don't package testsuite
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python_flavor=`cat _current_flavor`
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sitesearch_path=`$python -c "import sysconfig as s; print(s.get_paths(vars={'platbase':'%{hpc_prefix}','base':'%{hpc_prefix}'}).get('platlib'))"`
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rm -rf %{buildroot}${sitesearch_path}/numpy/{,core,distutils,f2py,fft,lib,linalg,ma,matrixlib,oldnumeric,polynomial,random,testing}/tests
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%hpc_write_modules_files
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#%%Module1.0#####################################################################
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proc ModulesHelp { } {
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puts stderr " "
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puts stderr "This module loads the %{pname} library built with the %{compiler_family} compiler"
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puts stderr "toolchain."
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puts stderr "\nVersion %{version}\n"
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}
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module-whatis "Name: %{pname} built with %{compiler_family} compiler"
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module-whatis "Version: %{version}"
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module-whatis "Category: python module"
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module-whatis "Description: %{SUMMARY:0}"
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module-whatis "URL %{url}"
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set version %{version}
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if [ expr [ module-info mode load ] || [module-info mode display ] ] {
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if { ![is-loaded intel] && ![is-loaded openblas] } {
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module load openblas
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}
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}
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prepend-path PATH %{hpc_bindir}
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prepend-path PYTHONPATH ${sitesearch_path}
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setenv %{hpc_upcase_trans_hyph %{pname}}_DIR %{hpc_prefix}
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setenv %{hpc_upcase_trans_hyph %{pname}}_BIN %{hpc_bindir}
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family "NumPy"
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EOF
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}
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%endif
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%check
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%if %{without hpc}
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export PATH="%{buildroot}%{_bindir}:$PATH"
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mkdir testing
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cp numpy/conftest.py testing/
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pushd testing
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# flaky tests
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test_failok+=" or test_structured_object_indexing"
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test_failok+=" or test_structured_object_item_setting"
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# boo#1148173 gh#numpy/numpy#14438
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%ifarch ppc64 ppc64le
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test_failok+=" or test_generalized_sq"
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%endif
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# these tests fail on big endian gh#numpy/numpy#11831
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%ifarch s390x ppc ppc64
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test_failok+=" or TestF77ReturnCharacter"
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test_failok+=" or TestF90ReturnCharacter"
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%endif
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%ifarch %ix86
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# (arm 32-bit seems okay here)
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# gh#numpy/numpy#18387
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test_failok+=" or test_pareto"
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# gh#numpy/numpy#18388
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test_failok+=" or test_float_remainder_overflow"
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%endif
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%{python_expand # for all python3 flavors
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export PYTHONPATH=%{buildroot}%{$python_sitearch}
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export PYTHONDONTWRITEBYTECODE=1
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$python -c 'from numpy import _pytesttester as ptt; ptt._show_numpy_info()'
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testcall="pytest-%{$python_bin_suffix} -n auto -c ../pytest.ini %{buildroot}%{$python_sitearch}/numpy"
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[ -n "$test_failok" ] && ${testcall} -k "${test_failok:4}" || true
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${testcall} ${test_failok:+-k "not (${test_failok:4})"}
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rm -Rf %{buildroot}%{$python_sitearch}/numpy/.pytest_cache
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}
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popd
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%endif
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%if %{without hpc}
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%post
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%python_install_alternative f2py
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%postun
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%python_uninstall_alternative f2py
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%endif
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%files %{python_files}
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%doc README.md THANKS.txt
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%if %{without hpc}
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%python_alternative %{_bindir}/f2py
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%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
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%{_bindir}/f2py3
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%endif
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%{_bindir}/f2py%{python_bin_suffix}
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%{python_sitearch}/numpy/
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%{python_sitearch}/numpy-%{version}-py*.egg-info
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%license %{python_sitearch}/numpy/LICENSE.txt
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%exclude %{python_sitearch}/numpy/core/include/
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%exclude %{python_sitearch}/numpy/distutils/mingw/*.c
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%exclude %{python_sitearch}/numpy/distutils/checks/*.c
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%exclude %{python_sitearch}/numpy/f2py/src/
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%exclude %{python_sitearch}/numpy/core/lib/libnpymath.a
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%exclude %{python_sitearch}/numpy/random/lib/libnpyrandom.a
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%else
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%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
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%{p_bindir}/f2py
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%{p_bindir}/f2py3
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%endif
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%{p_bindir}/f2py%{python_bin_suffix}
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%{p_python_sitearch}/numpy/
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%{p_python_sitearch}/numpy-%{version}-py*.egg-info
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%license %{p_python_sitearch}/numpy/LICENSE.txt
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%exclude %{p_python_sitearch}/numpy/core/include/
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%exclude %{p_python_sitearch}/numpy/core/lib/libnpymath.a
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%exclude %{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
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%exclude %{p_python_sitearch}/numpy/distutils/mingw/*.c
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%exclude %{p_python_sitearch}/numpy/distutils/checks/*.c
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%exclude %{p_python_sitearch}/numpy/f2py/src/
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%endif
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%if %{with hpc}
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%define hpc_module_pname %{python_flavor}-numpy
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%{hpc_modules_files}
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%{hpc_dirs}
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%dir %{hpc_bindir}
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%dir %{hpc_libdir}/python%{hpc_python_version}
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%dir %{p_python_sitearch}
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%endif
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%files %{python_files devel}
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%license LICENSE.txt
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%if %{without hpc}
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%{python_sitearch}/numpy/core/include/
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%{python_sitearch}/numpy/distutils/mingw/*.c
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%{python_sitearch}/numpy/distutils/checks/*.c
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%{python_sitearch}/numpy/f2py/src/
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%{python_sitearch}/numpy/core/lib/libnpymath.a
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%{python_sitearch}/numpy/random/lib/libnpyrandom.a
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%else
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%{p_python_sitearch}/numpy/core/include/
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%{p_python_sitearch}/numpy/core/lib/libnpymath.a
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%{p_python_sitearch}/numpy/random/lib/libnpyrandom.a
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%{p_python_sitearch}/numpy/distutils/mingw/*.c
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%{p_python_sitearch}/numpy/distutils/checks/*.c
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%{p_python_sitearch}/numpy/f2py/src/
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%endif
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%changelog
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