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19 Commits

Author SHA256 Message Date
Benjamin Greiner
98b6608552 Accepting request 1284016 from home:bnavigator:branches:devel:languages:python:numeric 
- Enable test suite for x86_64

OBS-URL: https://build.opensuse.org/request/show/1284016
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=35
 2025-06-09 08:23:19 +00:00
Benjamin Greiner
a956bb87cf Accepting request 1283669 from home:hsk17:branches:devel:languages:python:numeric 
require Mesa-libGL-devel to build, require one of PyQt6 or PySide6 to run, recommend Pmw (for legacy plugin manager)

OBS-URL: https://build.opensuse.org/request/show/1283669
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=34
 2025-06-08 15:35:19 +00:00
Benjamin Greiner
0f9782ed90 Accepting request 1253160 from home:hsk17:branches:devel:languages:python:numeric 
changes to .spec file to make build work on leap 15.6

OBS-URL: https://build.opensuse.org/request/show/1253160
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=31
 2025-03-14 20:01:39 +00:00
Matej Cepl
e90df323b8 Accepting request 1252592 from home:hsk17:branches:devel:languages:python:numeric 
update to 3.1.0

OBS-URL: https://build.opensuse.org/request/show/1252592
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=29
 2025-03-13 12:47:15 +00:00
Matej Cepl
334f87d0c1 Accepting request 1223726 from home:bmwiedemann:branches:devel:languages:python:numeric 
Add reproducible.patch to normalize build date (boo#1047218)
Remove no-build-date.patch (replaced by reproducible.patch)

OBS-URL: https://build.opensuse.org/request/show/1223726
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=27
 2024-11-12 21:01:38 +00:00
Matej Cepl
c8145bb8f9 - Remove upstream patches: 
* pymol3-version-compare.patch
  * no-o3.patch
  * pymol3-numpy2.patch

OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=25
 2024-10-11 15:06:22 +00:00
Matej Cepl
9d9eccbd81 - Update to version 3.0.0+git.1725549602.9d3061c: 
* Symbol renaming in molfile_plugin and internal linkage
  * New command: delete_states
  * mark bind() calls with override where needed
  * Separate CGO to VBO logic out into functions
  * Remove unused returnData
  * Use vector for memory alloc
  * Use struct for total vert counts in CGO.cpp
  * Remove _PYMOL_IOS (Discontinued; prep for MVK)
  * Python 3.12 TypeError: convert progress to int for progress bar
  * Fix ray/draw panel error when modifying units

OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=23
 2024-10-10 23:32:46 +00:00
Matej Cepl
cab00cd5e2 Accepting request 1205296 from home:hsk17:branches:devel:languages:python:numeric 
add upstream patches adding numpy-2 compatability, and fixing tests/helpers/test_utils.py

OBS-URL: https://build.opensuse.org/request/show/1205296
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=20
 2024-10-04 15:25:08 +00:00
Markéta Machová
27e97fcf03 Accepting request 1183318 from home:hsk17:branches:devel:languages:python:numeric 
- update to 3.0.0
- added test stuff -- succeeds for x86_64, unstable for other archs

OBS-URL: https://build.opensuse.org/request/show/1183318
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=18
 2024-06-26 10:01:51 +00:00
Matej Cepl
e660e4bb4b Accepting request 1103513 from home:hsk17:branches:devel:languages:python:numeric 
OBS-URL: https://build.opensuse.org/request/show/1103513
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=16
 2023-08-12 13:59:29 +00:00
Steve Kowalik
71665ee029 - Remove the execute bit from some test scripts to remove a spurious 
requirement.

OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=14
 2021-05-19 04:31:55 +00:00
Markéta Machová
bc20dfc27c Accepting request 874165 from home:andythe_great:branches:devel:languages:python:numeric 
- Skip python3.6 because numpy no longer support it.
- Add mmtf-cpp-devel and use msgpackc.
- Attempt to get the test to run.
  * Use _service to download pymol-testing for test data.
  * Use bcond to enable/disable testing arguments.
  * Pymol seems to need itself to test.
  * Add %check section.

OBS-URL: https://build.opensuse.org/request/show/874165
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=12
 2021-02-22 16:56:51 +00:00
Matej Cepl
e9ae5bd42a - Update to 2.4.0: 
* load_traj
    - support netcdf format
    - support `selection` argument with all file formats
  * CCP4/MRC Map Support
    - Distinguish .ccp4 and .mrc extensions (regarding origin)
    - .map extension: auto-detect the format
  * New distance mode 8
  * MMTF export: Consider `pdb_retain_ids` setting
  * GLTF export (based on collada2gltf)
  * New `internal_gui_name_color_mode` setting
  * MPEG4 Movie export: Apply `movie_fps` setting to exported
    file
  * Python API
    - Improved error handling with exceptions
    - New: cmd.rebond()
    - New: cmd.get_capabilities()
    - Fix: cmd.get_bonds() state off by one
    - cmd.fit() et al.: raise on error
  * Launch Options
    - Restore `-V` launch argument for external GUI height
    - macOS: `open` event opens new window

OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=9
 2020-09-01 16:26:13 +00:00
Tomáš Chvátal
b8355fc0da Accepting request 773201 from home:StefanBruens:branches:devel:languages:python:numeric 
- Remove glew runtime dependency (only contains debug tools and
  documentation).
- Remove freeglut build dependency (unused unless enabled with
  '--glut' setup.py option).
- Use https for URL.

OBS-URL: https://build.opensuse.org/request/show/773201
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=7
 2020-02-10 20:13:23 +00:00
Tomáš Chvátal
1a00d641e5 Accepting request 673391 from home:mcepl:branches:devel:languages:python:numeric 
- Upgrade to 2.3.0:
    * atom-level cartoon_transparency
    * aln export for Nucleic Acids
    * new API function: cmd.set_raw_alignment()
    * fetch async=0 by default
    * fast MMTF export (requires mmtf-cpp)
    * new setting: seq_view_gap_mode

OBS-URL: https://build.opensuse.org/request/show/673391
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-pymol?expand=0&rev=5
 2019-02-11 15:56:42 +00:00
Dominique Leuenberger
57b7afd7b0 Accepting request 662740 from devel:languages:python:numeric 
- Update to version 2.2.0+git.1544795767.c481a7c1:
  * fix SettingUniqueFromPyList w/ float3
  * remove pymol::Image::Image(T&& vec, ...)
  * refactor: pymol::Image tweaks
  * rewrite "get_raw_alignment"
  * refactor: pymol::vla::operator->() usage
  * fix #16 pymol::vla::operator[] for VS2015 32bit
  * fix pymol::vla::operator+ for VS2015
  * pymol::Image::pixels()
  * fix build
  * fix macOS build
- Switch off msgpackc as we don't have mmtf-cpp packaged.

OBS-URL: https://build.opensuse.org/request/show/662740
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-pymol?expand=0&rev=4
 2019-01-05 13:42:32 +00:00
Dominique Leuenberger
7119b77697 Accepting request 631103 from devel:languages:python 
- Version update to 2.2.0:
  * Switch devel links to github
  * No finegraned news file see ChangeLog for commit info
- Rebase patch no-o3.patch

- Fix fdupes call
- Install license and docu files

OBS-URL: https://build.opensuse.org/request/show/631103
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-pymol?expand=0&rev=3
 2018-08-31 08:42:08 +00:00
Yuchen Lin
bd75c6582d Accepting request 614549 from devel:languages:python 
OBS-URL: https://build.opensuse.org/request/show/614549
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-pymol?expand=0&rev=2
 2018-06-22 11:30:01 +00:00
Dominique Leuenberger
0c0a9a4e33 Accepting request 603083 from devel:languages:python 
Rename from pymol

OBS-URL: https://build.opensuse.org/request/show/603083
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-pymol?expand=0&rev=1
 2018-05-08 11:36:29 +00:00